Wall clock time and date at job start Wed Apr 1 2020 02:47:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 120.00306 * 2 1
4 4 H 1.48506 * 109.46823 * 239.99853 * 3 2 1
5 5 H 1.48502 * 109.46866 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47507 * 119.99351 * 3 2 1
7 7 C 1.37882 * 119.99654 * 179.97438 * 2 1 3
8 8 H 1.08010 * 119.99796 * 172.23872 * 7 2 1
9 9 C 1.50693 * 120.00193 * 352.23210 * 7 2 1
10 10 C 1.53006 * 115.54826 * 84.78858 * 9 7 2
11 11 S 1.81397 * 109.47099 * 65.18985 * 10 9 7
12 12 O 1.42097 * 110.54446 * 62.05424 * 11 10 9
13 13 O 1.42100 * 110.54082 * 285.29932 * 11 10 9
14 14 N 1.65597 * 104.44802 * 173.67747 * 11 10 9
15 15 C 1.47156 * 120.99227 * 269.97431 * 14 11 10
16 16 C 1.53297 * 108.42208 * 129.45364 * 15 14 11
17 17 O 1.42983 * 109.21286 * 52.34490 * 16 15 14
18 18 C 1.42852 * 114.16992 * 297.57713 * 17 16 15
19 19 C 1.53071 * 109.58776 * 302.34806 * 18 17 16
20 20 C 1.53116 * 109.21152 * 296.73008 * 19 18 17
21 21 O 1.42905 * 109.39210 * 302.62268 * 20 19 18
22 22 C 1.42904 * 114.20036 * 61.08753 * 21 20 19
23 23 C 1.53059 * 109.60177 * 182.49753 * 18 17 16
24 24 C 1.47177 * 120.99496 * 90.00106 * 14 11 10
25 25 C 1.53003 * 117.50231 * 230.45529 * 9 7 2
26 26 C 1.52999 * 117.50155 * 299.11519 * 9 7 2
27 27 H 0.97001 * 119.99692 * 5.03951 * 1 2 3
28 28 H 1.08999 * 109.46578 * 305.19212 * 10 9 7
29 29 H 1.09003 * 109.47106 * 185.19173 * 10 9 7
30 30 H 1.09000 * 109.67752 * 249.18958 * 15 14 11
31 31 H 1.08998 * 109.67221 * 9.72580 * 15 14 11
32 32 H 1.08990 * 109.51376 * 172.26600 * 16 15 14
33 33 H 1.09004 * 109.51121 * 292.37428 * 16 15 14
34 34 H 1.09006 * 109.51850 * 56.66297 * 19 18 17
35 35 H 1.08997 * 109.52466 * 176.78724 * 19 18 17
36 36 H 1.09001 * 109.48212 * 62.52552 * 20 19 18
37 37 H 1.08991 * 109.48295 * 182.57260 * 20 19 18
38 38 H 1.09000 * 109.48370 * 178.87613 * 22 21 20
39 39 H 1.08998 * 109.49436 * 58.83405 * 22 21 20
40 40 H 1.09003 * 109.52354 * 183.14009 * 23 18 17
41 41 H 1.09006 * 109.52327 * 303.26559 * 23 18 17
42 42 H 1.08997 * 109.68701 * 110.65513 * 24 14 11
43 43 H 1.09001 * 109.71554 * 350.10984 * 24 14 11
44 44 H 1.08999 * 117.50143 * 215.00662 * 25 9 7
45 45 H 1.09002 * 117.49821 * 0.02562 * 25 9 7
46 46 H 1.09001 * 117.49550 * 359.97438 * 26 9 7
47 47 H 1.09001 * 117.49612 * 144.97298 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0771 -1.1985 -0.1258
9 6 1.2613 -2.4931 0.1775
10 6 0.6669 -3.0924 -1.0987
11 16 2.0072 -3.5642 -2.2263
12 8 2.8286 -4.5615 -1.6350
13 8 2.5758 -2.4126 -2.8344
14 7 1.2443 -4.3479 -3.4697
15 6 1.0246 -5.8024 -3.4273
16 6 -0.4516 -6.0785 -3.7350
17 8 -0.8101 -5.4185 -4.9516
18 6 -0.6951 -3.9955 -4.9009
19 6 -1.5675 -3.4502 -3.7676
20 6 -3.0358 -3.7664 -4.0652
21 8 -3.3956 -3.2040 -5.3287
22 6 -2.6449 -3.7146 -6.4323
23 6 -1.1612 -3.3950 -6.2294
24 6 0.7663 -3.6108 -4.6505
25 6 1.7803 -3.4650 1.2392
26 6 0.4825 -2.6897 1.4797
27 1 -0.4850 0.8368 -0.0738
28 1 0.0275 -2.3544 -1.5829
29 1 0.0776 -3.9738 -0.8458
30 1 1.6524 -6.2903 -4.1730
31 1 1.2699 -6.1818 -2.4354
32 1 -0.6062 -7.1519 -3.8439
33 1 -1.0699 -5.7023 -2.9199
34 1 -1.2774 -3.9186 -2.8270
35 1 -1.4352 -2.3708 -3.6930
36 1 -3.1759 -4.8469 -4.0962
37 1 -3.6650 -3.3403 -3.2840
38 1 -2.9937 -3.2508 -7.3550
39 1 -2.7789 -4.7945 -6.4949
40 1 -1.0207 -2.3143 -6.2099
41 1 -0.5804 -3.8231 -7.0465
42 1 1.3698 -3.8765 -5.5184
43 1 0.8375 -2.5385 -4.4682
44 1 1.6982 -4.5313 1.0285
45 1 2.6590 -3.1646 1.8099
46 1 0.5080 -1.8797 2.2085
47 1 -0.4536 -3.2457 1.4271
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001365137414.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:47:54
Heat of formation + Delta-G solvation = -152.499117 kcal
Electronic energy + Delta-G solvation = -31372.931755 eV
Core-core repulsion = 27262.101701 eV
Total energy + Delta-G solvation = -4110.830054 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.58027 -38.84505 -38.60362 -38.09396 -36.89552 -35.78350 -34.32342 -34.10789
-32.15564 -30.30968 -29.90122 -27.66489 -27.36654 -25.10212 -24.48045 -23.05688
-22.94814 -21.37560 -20.58805 -19.86415 -18.74175 -18.40219 -17.56723 -17.52596
-17.08871 -16.87620 -16.74989 -16.54611 -16.03740 -15.99425 -15.74694 -15.53346
-15.33590 -15.13450 -14.90730 -13.80479 -13.76235 -13.73673 -13.55485 -13.47782
-13.29474 -13.18688 -13.13227 -12.99529 -12.89533 -12.87574 -12.66022 -12.47568
-12.35007 -12.27033 -12.01358 -11.97107 -11.69553 -11.41905 -11.24163 -11.05959
-10.90005 -10.56853 -10.55851 -10.00518 -9.66574 -8.21669 -6.36182 -0.64594
1.37167 1.38655 1.45693 1.77854 2.37365 2.67322 2.92254 2.98766
3.04356 3.21606 3.36743 3.51338 3.60967 3.74727 3.76370 3.99376
4.02387 4.09026 4.17033 4.27228 4.30064 4.31741 4.46360 4.49148
4.53973 4.56629 4.62650 4.67424 4.71491 4.79569 4.79967 4.84821
4.91133 4.95505 4.96119 5.08957 5.11077 5.19020 5.26445 5.42322
5.51432 5.57008 5.68679 6.16102 6.19801 6.28991 6.68966 7.36022
8.84709
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.012528 B = 0.004729 C = 0.004160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2234.479132 B = 5919.351258 C = 6729.960429
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.888 5.888
2 C 0.046 3.954
3 Si 0.931 3.069
4 H -0.278 1.278
5 H -0.273 1.273
6 H -0.268 1.268
7 C -0.537 4.537
8 H 0.045 0.955
9 C 0.011 3.989
10 C -0.545 4.545
11 S 2.615 3.385
12 O -0.988 6.988
13 O -0.990 6.990
14 N -1.005 6.005
15 C 0.079 3.921
16 C 0.041 3.959
17 O -0.366 6.366
18 C 0.112 3.888
19 C -0.191 4.191
20 C 0.071 3.929
21 O -0.402 6.402
22 C 0.064 3.936
23 C -0.141 4.141
24 C 0.098 3.902
25 C -0.196 4.196
26 C -0.135 4.135
27 H 0.266 0.734
28 H 0.122 0.878
29 H 0.131 0.869
30 H 0.088 0.912
31 H 0.102 0.898
32 H 0.137 0.863
33 H 0.063 0.937
34 H 0.082 0.918
35 H 0.069 0.931
36 H 0.065 0.935
37 H 0.096 0.904
38 H 0.111 0.889
39 H 0.063 0.937
40 H 0.086 0.914
41 H 0.101 0.899
42 H 0.089 0.911
43 H 0.083 0.917
44 H 0.100 0.900
45 H 0.081 0.919
46 H 0.065 0.935
47 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.270 -12.695 -11.073 18.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.523 5.523
2 C -0.158 4.158
3 Si 0.756 3.244
4 H -0.204 1.204
5 H -0.198 1.198
6 H -0.193 1.193
7 C -0.574 4.574
8 H 0.064 0.936
9 C 0.008 3.992
10 C -0.678 4.678
11 S 2.714 3.286
12 O -0.978 6.978
13 O -0.980 6.980
14 N -0.844 5.844
15 C -0.046 4.046
16 C -0.036 4.036
17 O -0.284 6.284
18 C 0.071 3.929
19 C -0.229 4.229
20 C -0.005 4.005
21 O -0.322 6.322
22 C -0.012 4.012
23 C -0.179 4.179
24 C -0.028 4.028
25 C -0.234 4.234
26 C -0.174 4.174
27 H 0.075 0.925
28 H 0.141 0.859
29 H 0.149 0.851
30 H 0.106 0.894
31 H 0.120 0.880
32 H 0.155 0.845
33 H 0.081 0.919
34 H 0.100 0.900
35 H 0.088 0.912
36 H 0.083 0.917
37 H 0.114 0.886
38 H 0.129 0.871
39 H 0.081 0.919
40 H 0.105 0.895
41 H 0.120 0.880
42 H 0.108 0.892
43 H 0.101 0.899
44 H 0.118 0.882
45 H 0.099 0.901
46 H 0.084 0.916
47 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -6.667 -12.394 -11.163 17.963
hybrid contribution 0.423 1.316 0.737 1.567
sum -6.244 -11.078 -10.426 16.444
Atomic orbital electron populations
1.69998 1.06462 1.27847 1.48014 1.25472 0.95616 1.01365 0.93310
0.86029 0.79243 0.80191 0.78925 1.20402 1.19773 1.19267 1.20636
0.93003 0.90729 1.53042 0.93639 1.18395 1.00408 0.94264 0.86100
1.29916 1.16494 1.09177 1.12250 1.04743 0.76793 0.72703 0.74342
1.93451 1.65877 1.59698 1.78769 1.93475 1.76494 1.52597 1.75480
1.57897 1.77215 1.16655 1.32614 1.22342 0.98884 0.78651 1.04682
1.23219 0.92906 0.99694 0.87816 1.87925 1.87660 1.17303 1.35541
1.21670 0.92453 0.82234 0.96532 1.22877 0.97651 1.02433 0.99914
1.22484 0.93606 0.98650 0.85775 1.87892 1.61176 1.67055 1.16035
1.22652 0.89453 0.99514 0.89570 1.22210 0.98401 1.01692 0.95570
1.22152 0.95416 0.96731 0.88508 1.23247 0.98177 0.96954 1.04985
1.22503 0.93816 1.00763 1.00347 0.92510 0.85940 0.85097 0.89400
0.87992 0.84487 0.91863 0.90000 0.91224 0.91667 0.88603 0.87055
0.91908 0.89515 0.88046 0.89243 0.89880 0.88168 0.90084 0.91608
0.89216
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -48.11 12.98 21.45 0.28 -47.84 16
2 C 0.05 2.49 5.38 84.66 0.46 2.95 16
3 Si 0.93 43.79 29.55 68.60 2.03 45.82 16
4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16
5 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
7 C -0.54 -29.51 8.19 25.60 0.21 -29.30 16
8 H 0.05 2.62 7.83 -2.91 -0.02 2.60 16
9 C 0.01 0.50 1.32 -52.93 -0.07 0.43 16
10 C -0.55 -21.76 5.29 71.98 0.38 -21.38 16
11 S 2.61 104.59 5.15 -56.49 -0.29 104.29 16
12 O -0.99 -42.02 16.81 -127.65 -2.15 -44.17 16
13 O -0.99 -48.10 16.49 -127.65 -2.11 -50.21 16
14 N -1.01 -29.54 2.86 -511.76 -1.46 -31.00 16
15 C 0.08 1.74 6.50 86.35 0.56 2.30 16
16 C 0.04 0.72 6.61 72.08 0.48 1.19 16
17 O -0.37 -7.43 9.22 -148.98 -1.37 -8.80 16
18 C 0.11 2.53 0.68 -10.69 -0.01 2.53 16
19 C -0.19 -4.71 4.45 30.66 0.14 -4.57 16
20 C 0.07 1.58 6.71 72.02 0.48 2.06 16
21 O -0.40 -9.59 10.76 -148.98 -1.60 -11.19 16
22 C 0.06 1.17 6.70 72.02 0.48 1.65 16
23 C -0.14 -2.65 5.15 30.65 0.16 -2.50 16
24 C 0.10 2.64 5.16 86.31 0.45 3.08 16
25 C -0.20 -8.22 9.96 30.62 0.30 -7.91 16
26 C -0.14 -5.88 9.49 30.62 0.29 -5.59 16
27 H 0.27 13.78 8.32 -92.71 -0.77 13.01 16
28 H 0.12 5.21 8.11 -2.39 -0.02 5.19 16
29 H 0.13 4.13 8.09 -2.39 -0.02 4.11 16
30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
31 H 0.10 2.17 7.22 -2.39 -0.02 2.15 16
32 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16
33 H 0.06 1.07 6.20 -2.38 -0.01 1.06 16
34 H 0.08 2.00 5.27 -2.38 -0.01 1.99 16
35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
36 H 0.07 1.27 7.84 -2.39 -0.02 1.25 16
37 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16
38 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16
39 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16
40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
41 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16
42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
43 H 0.08 2.55 7.23 -2.39 -0.02 2.53 16
44 H 0.10 3.63 8.14 -2.39 -0.02 3.62 16
45 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16
46 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16
47 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16
Total: -1.00 -69.88 378.38 -1.42 -71.30
By element:
Atomic # 1 Polarization: 25.90 SS G_CDS: 0.96 Total: 26.86 kcal
Atomic # 6 Polarization: -59.37 SS G_CDS: 4.31 Total: -55.06 kcal
Atomic # 7 Polarization: -77.65 SS G_CDS: -1.19 Total: -78.84 kcal
Atomic # 8 Polarization: -107.14 SS G_CDS: -7.23 Total: -114.37 kcal
Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal
Atomic # 16 Polarization: 104.59 SS G_CDS: -0.29 Total: 104.29 kcal
Total: -69.88 -1.42 -71.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365137414.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -81.199 kcal
(2) G-P(sol) polarization free energy of solvation -69.885 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.084 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.415 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.300 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.499 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds