Wall clock time and date at job start Wed Apr 1 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99730 * 2 1 4 4 H 1.48498 * 109.46833 * 269.99806 * 3 2 1 5 5 H 1.48497 * 109.47259 * 29.99659 * 3 2 1 6 6 H 1.48498 * 109.47014 * 149.99795 * 3 2 1 7 7 C 1.37875 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99956 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99844 * 180.02562 * 7 2 1 10 10 N 1.46507 * 109.47075 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99657 * 95.71196 * 10 9 7 12 12 O 1.21292 * 119.99775 * 183.87413 * 11 10 9 13 13 C 1.50699 * 120.00337 * 3.87781 * 11 10 9 14 14 H 1.08998 * 109.70097 * 309.16156 * 13 11 10 15 15 C 1.53499 * 109.70934 * 69.78595 * 13 11 10 16 16 C 1.53253 * 108.15678 * 182.08953 * 15 13 11 17 17 C 1.50440 * 109.44446 * 313.17234 * 16 15 13 18 18 C 1.30687 * 122.48775 * 17.48777 * 17 16 15 19 19 O 1.35126 * 123.34949 * 359.56227 * 18 17 16 20 20 C 1.40101 * 119.99892 * 275.71336 * 10 9 7 21 21 C 1.38837 * 120.02245 * 352.72392 * 20 10 9 22 22 C 1.38125 * 120.04155 * 180.02562 * 21 20 10 23 23 C 1.38712 * 120.15834 * 359.96871 * 22 21 20 24 24 C 1.39004 * 119.93369 * 359.94928 * 23 22 21 25 25 C 1.38643 * 119.88085 * 359.85743 * 24 23 22 26 26 O 1.36118 * 120.78131 * 180.21030 * 24 23 22 27 27 C 1.43174 * 116.71006 * 342.70491 * 26 24 23 28 28 C 1.53475 * 108.23207 * 46.28203 * 27 26 24 29 29 O 1.36207 * 119.31757 * 179.80626 * 23 22 21 30 30 H 0.96995 * 119.99774 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47201 * 60.00223 * 9 7 2 32 32 H 1.08994 * 109.47386 * 300.00304 * 9 7 2 33 33 H 1.08997 * 109.72915 * 301.75656 * 15 13 11 34 34 H 1.08997 * 109.72675 * 62.37748 * 15 13 11 35 35 H 1.08999 * 109.47599 * 73.17070 * 16 15 13 36 36 H 1.09008 * 109.47350 * 193.17784 * 16 15 13 37 37 H 1.07992 * 118.75816 * 197.50610 * 17 16 15 38 38 H 1.08006 * 118.32078 * 179.84213 * 18 17 16 39 39 H 1.08007 * 119.97804 * 0.04301 * 21 20 10 40 40 H 1.08000 * 119.92274 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.98603 * 180.15889 * 25 24 23 42 42 H 1.08990 * 109.71498 * 286.59308 * 27 26 24 43 43 H 1.09000 * 109.74378 * 165.98512 * 27 26 24 44 44 H 1.08995 * 109.70905 * 180.53861 * 28 27 26 45 45 H 1.09001 * 109.70953 * 59.91400 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5752 0.0022 11 6 4.3346 -3.1725 -1.1587 12 8 4.6718 -4.3376 -1.1660 13 6 4.2899 -2.3929 -2.4475 14 1 3.3244 -1.8961 -2.5432 15 6 5.4141 -1.3478 -2.4597 16 6 5.3036 -0.5426 -3.7589 17 6 5.1203 -1.4843 -4.9177 18 6 4.7413 -2.7251 -4.7607 19 8 4.4888 -3.2776 -3.5537 20 6 4.1192 -3.2750 1.2100 21 6 3.9206 -2.6173 2.4165 22 6 4.0386 -3.3068 3.6075 23 6 4.3548 -4.6574 3.6026 24 6 4.5525 -5.3191 2.3962 25 6 4.4300 -4.6274 1.2009 26 8 4.8592 -6.6450 2.3710 27 6 5.3362 -7.2185 3.5931 28 6 4.4216 -6.7494 4.7328 29 8 4.4707 -5.3196 4.7872 30 1 -0.4849 0.8400 -0.0004 31 1 3.8745 -0.6799 0.8912 32 1 3.8752 -0.6803 -0.8887 33 1 5.3066 -0.6817 -1.6037 34 1 6.3817 -1.8479 -2.4172 35 1 4.4479 0.1298 -3.6981 36 1 6.2137 0.0396 -3.9042 37 1 5.3092 -1.1213 -5.9171 38 1 4.6284 -3.3416 -5.6403 39 1 3.6735 -1.5659 2.4237 40 1 3.8841 -2.7932 4.5450 41 1 4.5807 -5.1403 0.2625 42 1 6.3573 -6.8868 3.7809 43 1 5.3099 -8.3060 3.5244 44 1 4.7696 -7.1654 5.6782 45 1 3.3992 -7.0751 4.5414 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412505327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:56 Heat of formation + Delta-G solvation = -68.580775 kcal Electronic energy + Delta-G solvation = -31110.571494 eV Core-core repulsion = 26867.936461 eV Total energy + Delta-G solvation = -4242.635033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11267 -40.57123 -39.21687 -37.08930 -36.91497 -35.36063 -33.74984 -32.69401 -31.80589 -30.69589 -30.03041 -28.24512 -27.84068 -25.97754 -24.35820 -23.74531 -23.13311 -22.25629 -21.05144 -19.61693 -18.67440 -18.23701 -17.58644 -17.22581 -17.08158 -16.74473 -16.29688 -15.92054 -15.37349 -15.20403 -14.77961 -14.71263 -14.65985 -14.18872 -14.01651 -13.82356 -13.66485 -13.37372 -13.16181 -12.92483 -12.88469 -12.76217 -12.46651 -12.31565 -11.97475 -11.67341 -11.49862 -11.18843 -11.00566 -10.97777 -10.90394 -10.64011 -10.43805 -10.42731 -10.34871 -9.79187 -9.02619 -8.87454 -8.75078 -8.28445 -8.07572 -7.10518 -6.33436 -4.37947 1.61912 1.76112 2.39014 2.80899 2.99562 3.06649 3.12905 3.18382 3.27372 3.43198 3.95891 4.13404 4.20697 4.34163 4.62926 4.75867 4.83765 4.91597 4.93906 4.98809 5.03518 5.14653 5.25136 5.34852 5.45984 5.50626 5.56395 5.67698 5.69086 5.73635 5.82615 5.90113 6.04357 6.11869 6.18658 6.26949 6.41819 6.50801 6.54763 6.61368 6.71060 6.84389 7.17278 7.21074 7.36230 7.66313 7.78017 7.79780 8.21418 8.50198 8.73895 9.21987 10.78782 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.004299 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.907438 B = 6511.551542 C = 8668.914256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.083 3.917 3 Si 0.863 3.137 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.189 3.811 10 N -0.521 5.521 11 C 0.528 3.472 12 O -0.514 6.514 13 C 0.077 3.923 14 H 0.117 0.883 15 C -0.156 4.156 16 C -0.079 4.079 17 C -0.287 4.287 18 C 0.060 3.940 19 O -0.299 6.299 20 C 0.180 3.820 21 C -0.135 4.135 22 C -0.092 4.092 23 C 0.011 3.989 24 C 0.066 3.934 25 C -0.171 4.171 26 O -0.306 6.306 27 C 0.021 3.979 28 C 0.022 3.978 29 O -0.312 6.312 30 H 0.269 0.731 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.159 0.841 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.191 0.809 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.363 -5.207 1.201 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.122 4.122 3 Si 0.689 3.311 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.101 0.899 9 C 0.070 3.930 10 N -0.242 5.242 11 C 0.317 3.683 12 O -0.392 6.392 13 C 0.018 3.982 14 H 0.134 0.866 15 C -0.194 4.194 16 C -0.116 4.116 17 C -0.307 4.307 18 C -0.003 4.003 19 O -0.212 6.212 20 C 0.084 3.916 21 C -0.155 4.155 22 C -0.111 4.111 23 C -0.034 4.034 24 C 0.021 3.979 25 C -0.191 4.191 26 O -0.220 6.220 27 C -0.055 4.055 28 C -0.054 4.054 29 O -0.227 6.227 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.138 0.862 38 H 0.176 0.824 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.207 0.793 42 H 0.091 0.909 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.344 -5.886 1.193 12.836 hybrid contribution 0.108 1.147 0.132 1.159 sum 11.452 -4.740 1.326 12.465 Atomic orbital electron populations 1.69876 1.06207 1.27425 1.48288 1.24825 0.94724 0.98699 0.93995 0.87041 0.80653 0.84157 0.79229 1.19491 1.20485 1.18617 1.21229 0.88160 0.95511 1.53675 0.89944 1.20356 0.97045 0.76638 0.98985 1.45440 1.59388 1.15887 1.03464 1.20030 0.76884 0.86819 0.84555 1.90310 1.47332 1.16256 1.85271 1.22267 1.01488 0.89864 0.84590 0.86589 1.22373 0.98547 0.98266 1.00185 1.20339 1.02602 0.97085 0.91622 1.22477 1.11540 0.96390 1.00306 1.22054 0.96194 0.95030 0.87038 1.85950 1.85371 1.35051 1.14796 1.17482 0.98265 0.90339 0.85477 1.20764 1.03855 1.01266 0.89613 1.20101 1.01530 0.90991 0.98527 1.18843 1.07440 0.93308 0.83821 1.18714 1.02402 0.83696 0.93120 1.21905 1.04942 0.92756 0.99450 1.86312 1.81117 1.20631 1.33959 1.23544 0.97722 0.99883 0.84303 1.23518 1.00744 0.80490 1.00658 1.86263 1.89829 1.18802 1.27840 0.92077 0.93594 0.93547 0.88733 0.90269 0.90534 0.90420 0.86193 0.82415 0.83845 0.84875 0.79265 0.90925 0.86612 0.86708 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.72 13.96 55.43 0.77 -23.95 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.86 18.39 27.47 -169.99 -4.67 13.72 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.15 6.54 56.52 0.37 -4.78 16 7 C -0.55 -13.81 9.91 -34.44 -0.34 -14.15 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.19 3.93 3.19 -5.19 -0.02 3.91 16 10 N -0.52 -10.72 2.69 -114.73 -0.31 -11.03 16 11 C 0.53 10.79 7.00 -10.99 -0.08 10.71 16 12 O -0.51 -11.40 12.94 -14.07 -0.18 -11.58 16 13 C 0.08 1.38 2.39 -27.63 -0.07 1.31 16 14 H 0.12 2.19 7.59 -51.93 -0.39 1.80 16 15 C -0.16 -2.32 5.13 -26.34 -0.14 -2.45 16 16 C -0.08 -1.03 6.23 -27.88 -0.17 -1.20 16 17 C -0.29 -3.63 9.97 -36.07 -0.36 -3.99 16 18 C 0.06 0.83 10.88 29.10 0.32 1.15 16 19 O -0.30 -5.28 9.61 -36.69 -0.35 -5.64 16 20 C 0.18 3.68 6.46 -83.66 -0.54 3.14 16 21 C -0.13 -2.53 9.25 -39.40 -0.36 -2.89 16 22 C -0.09 -1.58 9.95 -39.45 -0.39 -1.98 16 23 C 0.01 0.19 6.50 -39.12 -0.25 -0.07 16 24 C 0.07 1.23 6.49 -39.15 -0.25 0.97 16 25 C -0.17 -3.48 8.96 -39.24 -0.35 -3.83 16 26 O -0.31 -5.11 10.42 -32.89 -0.34 -5.45 16 27 C 0.02 0.24 7.26 37.40 0.27 0.52 16 28 C 0.02 0.24 7.26 37.40 0.27 0.52 16 29 O -0.31 -4.77 10.42 -33.18 -0.35 -5.11 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.92 5.31 -51.93 -0.28 0.65 16 32 H 0.05 0.89 3.61 -51.93 -0.19 0.70 16 33 H 0.09 1.37 5.72 -51.93 -0.30 1.07 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.14 2.64 6.13 -52.48 -0.32 2.31 16 40 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 41 H 0.19 4.16 4.55 -56.15 -0.26 3.91 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -31.30 360.99 -8.10 -39.40 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -5.55 Total: 10.52 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.56 Total: -6.32 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.46 Total: -34.97 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -1.22 Total: -27.78 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.67 Total: 13.72 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.30 -8.10 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412505327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.178 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds