Wall clock time and date at job start Wed Apr 1 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48495 * 109.47151 * 272.55422 * 3 2 1 5 5 H 1.48507 * 109.47283 * 32.55512 * 3 2 1 6 6 H 1.48506 * 109.47312 * 152.55310 * 3 2 1 7 7 C 1.37878 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00150 * 354.70281 * 7 2 1 9 9 C 1.50708 * 119.99855 * 174.69995 * 7 2 1 10 10 C 1.52996 * 115.54597 * 88.55173 * 9 7 2 11 11 S 1.81402 * 109.47554 * 65.27192 * 10 9 7 12 12 O 1.42092 * 110.54128 * 62.14209 * 11 10 9 13 13 O 1.42109 * 110.53836 * 285.39756 * 11 10 9 14 14 N 1.65593 * 104.45093 * 173.77136 * 11 10 9 15 15 C 1.46503 * 120.00045 * 65.00122 * 14 11 10 16 16 H 1.09005 * 109.55705 * 334.78955 * 15 14 11 17 17 C 1.53183 * 109.56081 * 94.99961 * 15 14 11 18 18 C 1.53085 * 109.27910 * 177.31285 * 17 15 14 19 19 O 1.43021 * 109.37120 * 301.90866 * 18 17 15 20 20 C 1.42205 * 114.20192 * 60.01220 * 19 18 17 21 21 C 1.54014 * 110.33233 * 62.94102 * 20 19 18 22 22 C 1.54599 * 103.88596 * 118.87670 * 21 20 19 23 23 O 1.44472 * 104.82037 * 336.10284 * 22 21 20 24 24 C 1.44544 * 105.36209 * 40.17913 * 23 22 21 25 25 C 1.52488 * 110.97148 * 300.56121 * 20 19 18 26 26 C 1.52994 * 117.50044 * 234.21989 * 9 7 2 27 27 C 1.52989 * 117.49847 * 302.88341 * 9 7 2 28 28 H 0.97003 * 120.00381 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47497 * 305.26802 * 10 9 7 30 30 H 1.09005 * 109.47262 * 185.27302 * 10 9 7 31 31 H 0.97001 * 120.00150 * 244.99370 * 14 11 10 32 32 H 1.09003 * 109.50114 * 57.36530 * 17 15 14 33 33 H 1.09001 * 109.53162 * 297.27074 * 17 15 14 34 34 H 1.08993 * 109.48616 * 181.93902 * 18 17 15 35 35 H 1.08999 * 109.50667 * 61.88316 * 18 17 15 36 36 H 1.09000 * 110.54171 * 0.28030 * 21 20 19 37 37 H 1.08993 * 110.54956 * 237.47979 * 21 20 19 38 38 H 1.08997 * 110.36884 * 94.93829 * 22 21 20 39 39 H 1.09002 * 110.37239 * 217.26706 * 22 21 20 40 40 H 1.09003 * 110.38499 * 201.18009 * 24 23 22 41 41 H 1.08994 * 110.39549 * 78.78888 * 24 23 22 42 42 H 1.08996 * 109.51163 * 175.97469 * 25 20 19 43 43 H 1.09002 * 109.51161 * 296.12923 * 25 20 19 44 44 H 1.08999 * 117.50239 * 215.00587 * 26 9 7 45 45 H 1.09008 * 117.49813 * 0.02612 * 26 9 7 46 46 H 1.09003 * 117.50204 * 359.97421 * 27 9 7 47 47 H 1.09000 * 117.50165 * 144.97649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4425 2.0776 -1.3986 5 1 1.4746 2.6365 0.7534 6 1 3.5727 1.4252 0.6453 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0873 9 6 3.5067 -1.1969 -0.1200 10 6 4.2747 -1.0989 1.1996 11 16 3.9656 -2.5862 2.1911 12 8 4.4381 -3.7432 1.5151 13 8 2.6612 -2.5480 2.7539 14 7 4.9769 -2.4323 3.4933 15 6 4.7771 -1.3420 4.4511 16 1 4.2638 -0.5149 3.9606 17 6 3.9349 -1.8418 5.6289 18 6 3.7866 -0.7176 6.6574 19 8 5.0830 -0.2973 7.0910 20 6 5.9147 0.1965 6.0486 21 6 5.2952 1.4602 5.4229 22 6 6.3513 2.5589 5.6830 23 8 7.0998 2.0889 6.8259 24 6 7.2655 0.6682 6.6172 25 6 6.1358 -0.8658 4.9772 26 6 4.1243 -2.0421 -1.2358 27 6 4.1183 -0.5154 -1.3456 28 1 -0.4851 0.8400 0.0004 29 1 3.9407 -0.2194 1.7500 30 1 5.3418 -1.0149 0.9936 31 1 5.7015 -3.0642 3.6220 32 1 4.4282 -2.6963 6.0923 33 1 2.9494 -2.1404 5.2715 34 1 3.2169 -1.0803 7.5128 35 1 3.2644 0.1245 6.2032 36 1 4.3551 1.7092 5.9152 37 1 5.1428 1.3219 4.3526 38 1 7.0067 2.6673 4.8189 39 1 5.8643 3.5067 5.9122 40 1 7.4752 0.1675 7.5624 41 1 8.0654 0.4803 5.9011 42 1 6.7153 -0.4411 4.1575 43 1 6.6759 -1.7094 5.4071 44 1 5.0778 -2.5285 -1.0297 45 1 3.4441 -2.5959 -1.8830 46 1 3.4342 -0.0653 -2.0650 47 1 5.0677 0.0031 -1.2118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423844060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:16 Heat of formation + Delta-G solvation = -134.064815 kcal Electronic energy + Delta-G solvation = -30590.034060 eV Core-core repulsion = 26480.003378 eV Total energy + Delta-G solvation = -4110.030682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94844 -38.11219 -37.21157 -36.46420 -35.75727 -35.21454 -32.51592 -32.23596 -31.02248 -30.09784 -28.62464 -26.94642 -25.60668 -24.08748 -23.27570 -22.05335 -21.78888 -19.93805 -19.39054 -18.76297 -17.40506 -17.15610 -16.90088 -16.61222 -15.86297 -15.66340 -15.50359 -15.38085 -15.13395 -15.12587 -14.39633 -14.33777 -13.99227 -13.88166 -13.57828 -13.08508 -12.95996 -12.72178 -12.48013 -12.09843 -11.98181 -11.83695 -11.71004 -11.62905 -11.49361 -11.40059 -11.31176 -11.28680 -11.22675 -11.01549 -10.73274 -10.45087 -10.39267 -10.20576 -10.03384 -9.83208 -9.73974 -9.41824 -9.23509 -8.73752 -8.54321 -6.23798 -4.31507 0.82475 3.14184 3.17813 3.24127 3.25893 3.37779 3.69055 4.12402 4.26896 4.30048 4.43923 4.49120 4.55993 4.67432 4.73828 4.77743 4.84816 4.88125 4.92792 4.99430 5.12837 5.14424 5.19270 5.34873 5.39797 5.42003 5.45535 5.50235 5.54293 5.61750 5.70034 5.76183 5.80492 5.85893 5.96066 6.08193 6.10220 6.18575 6.35824 6.45466 6.57566 6.79684 6.99398 7.02472 7.07183 7.52171 8.29858 8.81772 9.36992 10.87637 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.004333 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.252196 B = 6460.796177 C = 7265.469916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.089 3.911 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.510 4.510 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.578 4.578 11 S 2.612 3.388 12 O -0.967 6.967 13 O -0.936 6.936 14 N -1.127 6.127 15 C 0.154 3.846 16 H 0.086 0.914 17 C -0.175 4.175 18 C 0.058 3.942 19 O -0.363 6.363 20 C 0.091 3.909 21 C -0.191 4.191 22 C 0.047 3.953 23 O -0.371 6.371 24 C 0.060 3.940 25 C -0.146 4.146 26 C -0.177 4.177 27 C -0.185 4.185 28 H 0.268 0.732 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.411 0.589 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.659 2.233 11.575 18.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.700 3.300 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.182 1.182 7 C -0.546 4.546 8 H 0.105 0.895 9 C -0.002 4.002 10 C -0.709 4.709 11 S 2.707 3.293 12 O -0.958 6.958 13 O -0.926 6.926 14 N -0.882 5.882 15 C 0.046 3.954 16 H 0.104 0.896 17 C -0.215 4.215 18 C -0.018 4.018 19 O -0.282 6.282 20 C 0.050 3.950 21 C -0.229 4.229 22 C -0.029 4.029 23 O -0.289 6.289 24 C -0.017 4.017 25 C -0.186 4.186 26 C -0.214 4.214 27 C -0.223 4.223 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.244 0.756 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.851 1.855 11.786 18.281 hybrid contribution 0.803 1.238 -0.626 1.603 sum 14.654 3.093 11.160 18.677 Atomic orbital electron populations 1.69890 1.06379 1.27350 1.47962 1.24945 0.94516 0.98907 0.93208 0.86946 0.80595 0.83578 0.78866 1.20062 1.21646 1.18227 1.20337 0.85902 0.95530 1.52880 0.89506 1.18847 0.94907 1.02706 0.83718 1.30319 1.07242 1.20594 1.12759 1.05070 0.73915 0.76689 0.73607 1.93523 1.81503 1.46081 1.74655 1.93585 1.36633 1.86729 1.75652 1.56134 1.50407 1.40059 1.41600 1.20726 0.95543 0.88902 0.90220 0.89593 1.22777 1.02974 0.99523 0.96203 1.22699 0.84384 0.96203 0.98558 1.87872 1.25647 1.82289 1.32391 1.22371 0.92051 0.92516 0.88101 1.23697 1.00946 0.95514 1.02728 1.23407 0.92457 0.97883 0.89192 1.89182 1.75415 1.21236 1.43085 1.23338 0.93797 0.82113 1.02411 1.22436 0.97852 0.99637 0.98644 1.23029 1.01487 0.92855 1.04020 1.22987 1.01100 0.95274 1.02977 0.92238 0.85853 0.87451 0.75609 0.90421 0.88398 0.88050 0.92352 0.89106 0.89363 0.91921 0.88764 0.87838 0.90591 0.89740 0.89745 0.90014 0.88572 0.88879 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.03 13.96 55.43 0.77 -25.26 16 2 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 20.21 24.96 -169.99 -4.24 15.97 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -5.37 5.68 56.52 0.32 -5.05 16 7 C -0.51 -13.82 8.78 -34.44 -0.30 -14.12 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 C 0.00 0.02 0.79 -155.67 -0.12 -0.10 16 10 C -0.58 -10.61 5.38 37.16 0.20 -10.41 16 11 S 2.61 48.23 5.12 -107.50 -0.55 47.68 16 12 O -0.97 -19.83 18.08 -57.54 -1.04 -20.87 16 13 O -0.94 -20.95 16.85 -57.54 -0.97 -21.92 16 14 N -1.13 -14.61 5.37 -4.68 -0.03 -14.63 16 15 C 0.15 1.83 2.42 -67.69 -0.16 1.66 16 16 H 0.09 1.06 6.16 -51.93 -0.32 0.74 16 17 C -0.18 -2.09 5.73 -26.59 -0.15 -2.24 16 18 C 0.06 0.63 6.55 37.20 0.24 0.87 16 19 O -0.36 -4.11 10.20 -35.23 -0.36 -4.47 16 20 C 0.09 0.90 1.04 -89.85 -0.09 0.80 16 21 C -0.19 -1.88 5.45 -25.36 -0.14 -2.02 16 22 C 0.05 0.44 7.64 38.00 0.29 0.73 16 23 O -0.37 -4.14 11.65 -35.23 -0.41 -4.55 16 24 C 0.06 0.55 6.92 37.66 0.26 0.81 16 25 C -0.15 -1.35 4.13 -26.85 -0.11 -1.46 16 26 C -0.18 -3.54 9.96 -26.70 -0.27 -3.80 16 27 C -0.18 -3.69 7.67 -26.70 -0.20 -3.90 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.12 2.20 6.03 -51.92 -0.31 1.89 16 30 H 0.11 1.56 8.09 -51.92 -0.42 1.14 16 31 H 0.41 4.31 8.80 -34.47 -0.30 4.00 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.36 7.49 -51.93 -0.39 0.97 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.62 6.60 -51.93 -0.34 0.27 16 36 H 0.09 0.92 6.70 -51.93 -0.35 0.57 16 37 H 0.09 0.83 6.81 -51.93 -0.35 0.48 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 41 H 0.08 0.55 7.84 -51.93 -0.41 0.14 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 46 H 0.09 1.95 7.34 -51.93 -0.38 1.57 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -34.39 373.61 -9.29 -43.68 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.44 Total: 9.54 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: -0.66 Total: -30.80 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.75 Total: -39.89 kcal Atomic # 8 Polarization: -49.04 SS G_CDS: -2.78 Total: -51.82 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.24 Total: 15.97 kcal Atomic # 16 Polarization: 48.23 SS G_CDS: -0.55 Total: 47.68 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.39 -9.29 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423844060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.381 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds