Wall clock time and date at job start Wed Apr 1 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48495 * 109.47151 * 272.55422 * 3 2 1 5 5 H 1.48507 * 109.47283 * 32.55512 * 3 2 1 6 6 H 1.48506 * 109.47312 * 152.55310 * 3 2 1 7 7 C 1.37878 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00150 * 354.70281 * 7 2 1 9 9 C 1.50708 * 119.99855 * 174.69995 * 7 2 1 10 10 C 1.52996 * 115.54597 * 88.55173 * 9 7 2 11 11 S 1.81402 * 109.47554 * 65.27192 * 10 9 7 12 12 O 1.42092 * 110.54128 * 62.14209 * 11 10 9 13 13 O 1.42109 * 110.53836 * 285.39756 * 11 10 9 14 14 N 1.65593 * 104.45093 * 173.77136 * 11 10 9 15 15 C 1.46503 * 120.00045 * 65.00122 * 14 11 10 16 16 H 1.09005 * 109.55705 * 334.78955 * 15 14 11 17 17 C 1.53183 * 109.56081 * 94.99961 * 15 14 11 18 18 C 1.53085 * 109.27910 * 177.31285 * 17 15 14 19 19 O 1.43021 * 109.37120 * 301.90866 * 18 17 15 20 20 C 1.42205 * 114.20192 * 60.01220 * 19 18 17 21 21 C 1.54014 * 110.33233 * 62.94102 * 20 19 18 22 22 C 1.54599 * 103.88596 * 118.87670 * 21 20 19 23 23 O 1.44472 * 104.82037 * 336.10284 * 22 21 20 24 24 C 1.44544 * 105.36209 * 40.17913 * 23 22 21 25 25 C 1.52488 * 110.97148 * 300.56121 * 20 19 18 26 26 C 1.52994 * 117.50044 * 234.21989 * 9 7 2 27 27 C 1.52989 * 117.49847 * 302.88341 * 9 7 2 28 28 H 0.97003 * 120.00381 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47497 * 305.26802 * 10 9 7 30 30 H 1.09005 * 109.47262 * 185.27302 * 10 9 7 31 31 H 0.97001 * 120.00150 * 244.99370 * 14 11 10 32 32 H 1.09003 * 109.50114 * 57.36530 * 17 15 14 33 33 H 1.09001 * 109.53162 * 297.27074 * 17 15 14 34 34 H 1.08993 * 109.48616 * 181.93902 * 18 17 15 35 35 H 1.08999 * 109.50667 * 61.88316 * 18 17 15 36 36 H 1.09000 * 110.54171 * 0.28030 * 21 20 19 37 37 H 1.08993 * 110.54956 * 237.47979 * 21 20 19 38 38 H 1.08997 * 110.36884 * 94.93829 * 22 21 20 39 39 H 1.09002 * 110.37239 * 217.26706 * 22 21 20 40 40 H 1.09003 * 110.38499 * 201.18009 * 24 23 22 41 41 H 1.08994 * 110.39549 * 78.78888 * 24 23 22 42 42 H 1.08996 * 109.51163 * 175.97469 * 25 20 19 43 43 H 1.09002 * 109.51161 * 296.12923 * 25 20 19 44 44 H 1.08999 * 117.50239 * 215.00587 * 26 9 7 45 45 H 1.09008 * 117.49813 * 0.02612 * 26 9 7 46 46 H 1.09003 * 117.50204 * 359.97421 * 27 9 7 47 47 H 1.09000 * 117.50165 * 144.97649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4425 2.0776 -1.3986 5 1 1.4746 2.6365 0.7534 6 1 3.5727 1.4252 0.6453 7 6 2.0045 -1.1941 0.0005 8 1 1.4679 -2.1274 0.0873 9 6 3.5067 -1.1969 -0.1200 10 6 4.2747 -1.0989 1.1996 11 16 3.9656 -2.5862 2.1911 12 8 4.4381 -3.7432 1.5151 13 8 2.6612 -2.5480 2.7539 14 7 4.9769 -2.4323 3.4933 15 6 4.7771 -1.3420 4.4511 16 1 4.2638 -0.5149 3.9606 17 6 3.9349 -1.8418 5.6289 18 6 3.7866 -0.7176 6.6574 19 8 5.0830 -0.2973 7.0910 20 6 5.9147 0.1965 6.0486 21 6 5.2952 1.4602 5.4229 22 6 6.3513 2.5589 5.6830 23 8 7.0998 2.0889 6.8259 24 6 7.2655 0.6682 6.6172 25 6 6.1358 -0.8658 4.9772 26 6 4.1243 -2.0421 -1.2358 27 6 4.1183 -0.5154 -1.3456 28 1 -0.4851 0.8400 0.0004 29 1 3.9407 -0.2194 1.7500 30 1 5.3418 -1.0149 0.9936 31 1 5.7015 -3.0642 3.6220 32 1 4.4282 -2.6963 6.0923 33 1 2.9494 -2.1404 5.2715 34 1 3.2169 -1.0803 7.5128 35 1 3.2644 0.1245 6.2032 36 1 4.3551 1.7092 5.9152 37 1 5.1428 1.3219 4.3526 38 1 7.0067 2.6673 4.8189 39 1 5.8643 3.5067 5.9122 40 1 7.4752 0.1675 7.5624 41 1 8.0654 0.4803 5.9011 42 1 6.7153 -0.4411 4.1575 43 1 6.6759 -1.7094 5.4071 44 1 5.0778 -2.5285 -1.0297 45 1 3.4441 -2.5959 -1.8830 46 1 3.4342 -0.0653 -2.0650 47 1 5.0677 0.0031 -1.2118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423844060.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:15 Heat of formation + Delta-G solvation = -162.462586 kcal Electronic energy + Delta-G solvation = -30591.265480 eV Core-core repulsion = 26480.003378 eV Total energy + Delta-G solvation = -4111.262102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.70906 -38.91397 -38.85689 -37.98971 -36.88943 -36.63159 -34.30174 -33.28659 -31.99359 -30.80093 -30.12239 -27.71132 -27.61391 -24.94158 -23.95543 -23.36134 -22.89756 -21.46630 -20.46517 -20.12543 -18.66945 -18.51263 -18.00325 -17.67555 -17.02034 -16.92881 -16.74721 -16.43571 -16.34682 -15.96848 -15.73919 -15.48952 -15.14578 -14.83723 -14.72490 -14.59275 -14.50058 -13.97739 -13.65165 -13.23631 -13.07139 -13.00561 -12.97757 -12.82717 -12.70697 -12.65005 -12.56299 -12.43025 -12.39975 -12.24243 -12.05322 -11.94246 -11.76006 -11.69513 -11.22893 -10.97817 -10.74357 -10.72501 -10.58073 -10.55882 -10.13162 -8.32548 -6.46175 -0.60913 1.34744 1.35696 1.49173 1.93829 2.34864 2.62594 2.84365 2.99784 3.02147 3.14355 3.36217 3.44225 3.63389 3.69161 3.74816 3.84880 3.94710 3.98051 4.09281 4.16118 4.19383 4.31912 4.34939 4.36942 4.40515 4.51624 4.59406 4.67675 4.72009 4.78186 4.82576 4.83671 4.84281 4.85162 4.99240 5.01998 5.07976 5.13739 5.20118 5.26826 5.44403 5.60990 5.79700 6.13768 6.19004 6.24836 6.65450 7.26526 8.83722 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.004333 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.252196 B = 6460.796177 C = 7265.469916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.209 1.209 7 C -0.513 4.513 8 H 0.026 0.974 9 C -0.032 4.032 10 C -0.572 4.572 11 S 2.616 3.384 12 O -0.994 6.994 13 O -0.991 6.991 14 N -1.105 6.105 15 C 0.145 3.855 16 H 0.082 0.918 17 C -0.177 4.177 18 C 0.061 3.939 19 O -0.374 6.374 20 C 0.085 3.915 21 C -0.196 4.196 22 C 0.046 3.954 23 O -0.395 6.395 24 C 0.060 3.940 25 C -0.138 4.138 26 C -0.176 4.176 27 C -0.167 4.167 28 H 0.268 0.732 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.426 0.574 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.271 4.032 11.742 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.174 4.174 3 Si 0.754 3.246 4 H -0.190 1.190 5 H -0.222 1.222 6 H -0.130 1.130 7 C -0.550 4.550 8 H 0.044 0.956 9 C -0.035 4.035 10 C -0.705 4.705 11 S 2.713 3.287 12 O -0.984 6.984 13 O -0.980 6.980 14 N -0.865 5.865 15 C 0.038 3.962 16 H 0.100 0.900 17 C -0.217 4.217 18 C -0.016 4.016 19 O -0.293 6.293 20 C 0.044 3.956 21 C -0.234 4.234 22 C -0.030 4.030 23 O -0.314 6.314 24 C -0.017 4.017 25 C -0.177 4.177 26 C -0.213 4.213 27 C -0.206 4.206 28 H 0.077 0.923 29 H 0.151 0.849 30 H 0.179 0.821 31 H 0.262 0.738 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.117 0.883 44 H 0.132 0.868 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.497 3.604 11.957 22.318 hybrid contribution -0.699 0.551 -0.664 1.111 sum 17.798 4.155 11.293 21.484 Atomic orbital electron populations 1.70073 1.08843 1.28443 1.50624 1.25968 0.95256 1.03452 0.92692 0.85997 0.81238 0.77634 0.79721 1.19045 1.22199 1.13047 1.20443 0.89235 0.93261 1.52101 0.95558 1.18767 0.92301 1.06023 0.86411 1.30168 1.09947 1.20127 1.10216 1.04566 0.73354 0.76632 0.74148 1.93476 1.81665 1.47636 1.75670 1.93532 1.40235 1.87448 1.76833 1.55538 1.49865 1.40929 1.40126 1.20947 0.97438 0.88218 0.89599 0.89988 1.22758 1.01685 1.00399 0.96832 1.22678 0.84630 0.95674 0.98613 1.87867 1.25739 1.82352 1.33365 1.22547 0.92276 0.92707 0.88055 1.23746 1.00743 0.95846 1.03059 1.23528 0.92478 0.97714 0.89327 1.89158 1.75724 1.22333 1.44205 1.23486 0.93855 0.81167 1.03178 1.22429 0.96141 1.00002 0.99147 1.23109 1.02197 0.93568 1.02408 1.23095 1.02204 0.95106 1.00164 0.92308 0.84947 0.82077 0.73775 0.89574 0.91248 0.87092 0.92615 0.90234 0.88572 0.90049 0.88460 0.87892 0.87981 0.87214 0.88255 0.86849 0.90412 0.90385 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.96 21.45 0.30 -58.32 16 2 C 0.03 1.43 5.47 84.66 0.46 1.89 16 3 Si 0.93 40.30 24.96 68.60 1.71 42.01 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.30 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.21 -7.30 5.68 99.48 0.57 -6.74 16 7 C -0.51 -28.74 8.78 25.60 0.22 -28.51 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C -0.03 -1.38 0.79 -52.93 -0.04 -1.42 16 10 C -0.57 -18.85 5.38 71.98 0.39 -18.46 16 11 S 2.62 94.07 5.12 -56.49 -0.29 93.78 16 12 O -0.99 -39.91 18.08 -127.65 -2.31 -42.22 16 13 O -0.99 -46.09 16.85 -127.65 -2.15 -48.24 16 14 N -1.10 -25.84 5.37 -168.73 -0.91 -26.74 16 15 C 0.15 3.08 2.42 45.15 0.11 3.19 16 16 H 0.08 1.83 6.16 -2.38 -0.01 1.81 16 17 C -0.18 -4.09 5.73 30.68 0.18 -3.92 16 18 C 0.06 1.26 6.55 72.01 0.47 1.73 16 19 O -0.37 -7.78 10.20 -148.98 -1.52 -9.30 16 20 C 0.08 1.42 1.04 -10.30 -0.01 1.41 16 21 C -0.20 -3.30 5.45 31.48 0.17 -3.12 16 22 C 0.05 0.70 7.64 72.53 0.55 1.26 16 23 O -0.40 -7.76 11.65 -148.98 -1.74 -9.50 16 24 C 0.06 0.88 6.92 72.31 0.50 1.39 16 25 C -0.14 -1.96 4.13 30.52 0.13 -1.83 16 26 C -0.18 -6.62 9.96 30.62 0.30 -6.31 16 27 C -0.17 -5.99 7.67 30.61 0.23 -5.75 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.13 4.15 6.03 -2.39 -0.01 4.13 16 30 H 0.16 3.56 8.09 -2.39 -0.02 3.54 16 31 H 0.43 7.55 8.80 -96.75 -0.85 6.70 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.01 7.49 -2.39 -0.02 1.99 16 34 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 1.16 6.60 -2.39 -0.02 1.15 16 36 H 0.08 1.49 6.70 -2.39 -0.02 1.48 16 37 H 0.10 1.44 6.81 -2.39 -0.02 1.42 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.10 0.97 7.84 -2.39 -0.02 0.96 16 42 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 45 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 46 H 0.08 3.04 7.34 -2.39 -0.02 3.02 16 47 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -80.80 373.61 -3.24 -84.04 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.01 Total: 32.95 kcal Atomic # 6 Polarization: -62.13 SS G_CDS: 3.67 Total: -58.46 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -0.61 Total: -85.06 kcal Atomic # 8 Polarization: -101.54 SS G_CDS: -7.71 Total: -109.26 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.71 Total: 42.01 kcal Atomic # 16 Polarization: 94.07 SS G_CDS: -0.29 Total: 93.78 kcal Total: -80.80 -3.24 -84.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423844060.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.427 kcal (2) G-P(sol) polarization free energy of solvation -80.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds