Wall clock time and date at job start Wed Apr 1 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99832 * 2 1 4 4 H 1.48509 * 109.46867 * 240.00380 * 3 2 1 5 5 H 1.48500 * 109.47316 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47207 * 120.00118 * 3 2 1 7 7 C 1.37876 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00320 * 172.81242 * 7 2 1 9 9 C 1.50702 * 120.00102 * 352.81279 * 7 2 1 10 10 C 1.53001 * 115.55068 * 84.88937 * 9 7 2 11 11 S 1.81405 * 109.46714 * 65.16412 * 10 9 7 12 12 O 1.42100 * 110.54639 * 61.05110 * 11 10 9 13 13 O 1.42105 * 110.54025 * 284.30296 * 11 10 9 14 14 N 1.65603 * 104.44876 * 172.67810 * 11 10 9 15 15 C 1.46500 * 119.99726 * 64.99733 * 14 11 10 16 16 H 1.09002 * 109.56159 * 25.21824 * 15 14 11 17 17 C 1.53180 * 109.55994 * 264.99824 * 15 14 11 18 18 C 1.53091 * 109.24903 * 182.64222 * 17 15 14 19 19 O 1.43020 * 109.38000 * 58.11951 * 18 17 15 20 20 C 1.42192 * 114.24459 * 300.02728 * 19 18 17 21 21 C 1.54005 * 110.37724 * 181.75711 * 20 19 18 22 22 C 1.54600 * 103.89387 * 118.60738 * 21 20 19 23 23 O 1.44466 * 104.82656 * 23.87009 * 22 21 20 24 24 C 1.44553 * 105.35526 * 319.82612 * 23 22 21 25 25 C 1.52493 * 110.98789 * 59.32301 * 20 19 18 26 26 C 1.52998 * 117.49978 * 230.56757 * 9 7 2 27 27 C 1.53007 * 117.49940 * 299.22683 * 9 7 2 28 28 H 0.96997 * 119.99941 * 5.03660 * 1 2 3 29 29 H 1.08994 * 109.47513 * 305.16555 * 10 9 7 30 30 H 1.09001 * 109.47217 * 185.15688 * 10 9 7 31 31 H 0.96998 * 119.99901 * 244.99248 * 14 11 10 32 32 H 1.09004 * 109.50908 * 302.57712 * 17 15 14 33 33 H 1.09003 * 109.50790 * 62.66562 * 17 15 14 34 34 H 1.08991 * 109.48886 * 178.09380 * 18 17 15 35 35 H 1.08998 * 109.48580 * 298.14969 * 18 17 15 36 36 H 1.09001 * 110.54456 * 237.21141 * 21 20 19 37 37 H 1.09005 * 110.54253 * 0.02562 * 21 20 19 38 38 H 1.09001 * 110.37025 * 142.70422 * 22 21 20 39 39 H 1.08994 * 110.37110 * 265.03184 * 22 21 20 40 40 H 1.08995 * 110.38739 * 281.23533 * 24 23 22 41 41 H 1.08997 * 110.38961 * 158.84379 * 24 23 22 42 42 H 1.08996 * 109.51150 * 184.11199 * 25 20 19 43 43 H 1.09008 * 109.50881 * 63.96597 * 25 20 19 44 44 H 1.09000 * 117.49496 * 215.00064 * 26 9 7 45 45 H 1.08998 * 117.50141 * 0.02562 * 26 9 7 46 46 H 1.09005 * 117.49623 * 359.97060 * 27 9 7 47 47 H 1.08994 * 117.49946 * 144.99891 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0782 -1.1977 -0.1176 9 6 1.2600 -2.4941 0.1622 10 6 0.6789 -3.0871 -1.1230 11 16 2.0310 -3.5521 -2.2395 12 8 2.8604 -4.5354 -1.6358 13 8 2.5898 -2.3987 -2.8532 14 7 1.2842 -4.3541 -3.4811 15 6 0.3532 -3.6407 -4.3589 16 1 0.5952 -2.5779 -4.3610 17 6 -1.0800 -3.8393 -3.8560 18 6 -2.0519 -3.1465 -4.8148 19 8 -1.8867 -3.6852 -6.1293 20 6 -0.5806 -3.5221 -6.6673 21 6 -0.5143 -4.0924 -8.0963 22 6 -0.1523 -2.8681 -8.9682 23 8 0.5009 -1.9503 -8.0638 24 6 -0.2510 -2.0270 -6.8316 25 6 0.4626 -4.1968 -5.7831 26 6 1.7681 -3.4711 1.2243 27 6 0.4676 -2.6974 1.4552 28 1 -0.4850 0.8368 -0.0737 29 1 0.0439 -2.3471 -1.6099 30 1 0.0878 -3.9703 -0.8808 31 1 1.4633 -5.2962 -3.6272 32 1 -1.3070 -4.9046 -3.8145 33 1 -1.1796 -3.4069 -2.8603 34 1 -3.0752 -3.3139 -4.4791 35 1 -1.8450 -2.0764 -4.8318 36 1 0.2607 -4.8556 -8.1680 37 1 -1.4817 -4.4990 -8.3912 38 1 0.5275 -3.1601 -9.7687 39 1 -1.0542 -2.4165 -9.3811 40 1 -1.1675 -1.4422 -6.9090 41 1 0.3541 -1.6774 -5.9951 42 1 1.4587 -3.9956 -6.1770 43 1 0.2865 -5.2725 -5.7684 44 1 1.6885 -4.5363 1.0074 45 1 2.6407 -3.1734 1.8057 46 1 0.4853 -1.8910 2.1884 47 1 -0.4674 -3.2537 1.3902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423844069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:25 Heat of formation + Delta-G solvation = -164.786348 kcal Electronic energy + Delta-G solvation = -30475.699404 eV Core-core repulsion = 26364.336536 eV Total energy + Delta-G solvation = -4111.362868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75652 -38.92050 -38.57774 -37.97700 -36.89744 -36.67969 -34.08990 -33.39005 -31.98623 -30.62199 -29.85856 -27.92464 -27.47531 -24.96434 -24.31332 -22.99116 -22.39980 -21.53696 -20.73083 -20.15489 -18.59807 -18.39981 -17.99038 -17.74111 -16.94807 -16.87088 -16.68158 -16.54216 -16.26577 -15.94366 -15.55784 -15.49468 -15.18067 -14.91430 -14.83081 -14.56854 -13.77418 -13.70097 -13.64071 -13.17397 -13.11103 -13.04443 -12.96710 -12.94302 -12.87194 -12.67781 -12.54666 -12.45260 -12.37805 -12.27894 -12.19006 -11.94657 -11.87427 -11.59421 -11.22059 -10.90645 -10.89327 -10.57820 -10.49169 -10.46356 -9.88933 -8.20464 -6.34662 -0.54917 1.38116 1.39630 1.46810 1.95649 2.38660 2.52479 2.90605 3.06727 3.14785 3.32223 3.38022 3.42315 3.63175 3.69046 3.74701 3.81129 3.96925 4.00272 4.12090 4.20351 4.28856 4.31935 4.41325 4.45061 4.52001 4.58467 4.68148 4.71475 4.76719 4.79183 4.82954 4.83590 4.90719 4.97883 4.98310 5.05097 5.10406 5.22199 5.25801 5.46912 5.59468 5.70529 5.71132 6.13508 6.21266 6.22145 6.70697 7.37559 8.86182 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013237 B = 0.003906 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.771179 B = 7167.332581 C = 7870.243541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.048 3.952 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.011 3.989 10 C -0.548 4.548 11 S 2.617 3.383 12 O -0.995 6.995 13 O -0.995 6.995 14 N -1.106 6.106 15 C 0.138 3.862 16 H 0.073 0.927 17 C -0.180 4.180 18 C 0.057 3.943 19 O -0.365 6.365 20 C 0.091 3.909 21 C -0.136 4.136 22 C 0.037 3.963 23 O -0.394 6.394 24 C 0.012 3.988 25 C -0.134 4.134 26 C -0.198 4.198 27 C -0.135 4.135 28 H 0.266 0.734 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.424 0.576 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.123 0.877 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.065 0.935 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -10.826 -14.671 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.156 4.156 3 Si 0.755 3.245 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.009 3.991 10 C -0.681 4.681 11 S 2.715 3.285 12 O -0.986 6.986 13 O -0.985 6.985 14 N -0.866 5.866 15 C 0.030 3.970 16 H 0.091 0.909 17 C -0.219 4.219 18 C -0.020 4.020 19 O -0.284 6.284 20 C 0.050 3.950 21 C -0.173 4.173 22 C -0.039 4.039 23 O -0.313 6.313 24 C -0.066 4.066 25 C -0.173 4.173 26 C -0.236 4.236 27 C -0.174 4.174 28 H 0.075 0.925 29 H 0.145 0.855 30 H 0.155 0.845 31 H 0.261 0.739 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.141 0.859 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.077 -10.312 -14.684 19.289 hybrid contribution 0.072 1.005 0.652 1.200 sum -7.005 -9.307 -14.033 18.238 Atomic orbital electron populations 1.69990 1.06380 1.27843 1.48147 1.25436 0.95616 1.01225 0.93309 0.86056 0.79289 0.80334 0.78863 1.20511 1.19697 1.19358 1.20661 0.92942 0.90739 1.53104 0.93637 1.18391 1.00431 0.94144 0.86127 1.29933 1.16593 1.09554 1.12011 1.04529 0.76486 0.72970 0.74534 1.93465 1.66219 1.60513 1.78358 1.93491 1.76714 1.53015 1.75292 1.55493 1.61339 1.23420 1.46327 1.21018 0.89057 0.96153 0.90734 0.90920 1.22889 0.93896 1.04354 1.00779 1.22753 1.00999 0.96924 0.81348 1.87860 1.28698 1.80524 1.31339 1.22393 0.83673 0.93901 0.95073 1.22921 1.05034 0.98939 0.90432 1.23719 0.98576 0.88334 0.93281 1.89179 1.53416 1.64723 1.23973 1.24178 0.97135 0.97112 0.88132 1.22345 0.99945 1.02431 0.92571 1.23245 0.98295 0.96956 1.05063 1.22509 0.93697 1.00748 1.00463 0.92468 0.85536 0.84482 0.73930 0.88190 0.90024 0.85891 0.93005 0.87982 0.87676 0.86940 0.91058 0.90754 0.89871 0.90059 0.87844 0.88264 0.90165 0.91611 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.60 12.96 21.45 0.28 -47.32 16 2 C 0.05 2.57 5.38 84.65 0.46 3.03 16 3 Si 0.93 43.74 29.55 68.60 2.03 45.77 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.47 8.23 25.60 0.21 -29.26 16 8 H 0.05 2.62 7.82 -2.91 -0.02 2.59 16 9 C 0.01 0.53 1.33 -52.93 -0.07 0.46 16 10 C -0.55 -21.49 4.90 71.98 0.35 -21.14 16 11 S 2.62 103.05 5.16 -56.49 -0.29 102.76 16 12 O -1.00 -42.69 18.08 -127.65 -2.31 -45.00 16 13 O -1.00 -48.24 17.12 -127.65 -2.19 -50.43 16 14 N -1.11 -30.36 5.37 -168.74 -0.91 -31.27 16 15 C 0.14 3.49 2.56 45.15 0.12 3.60 16 16 H 0.07 2.22 5.91 -2.39 -0.01 2.20 16 17 C -0.18 -3.78 5.68 30.68 0.17 -3.61 16 18 C 0.06 1.09 6.62 72.01 0.48 1.57 16 19 O -0.37 -7.26 10.14 -148.98 -1.51 -8.77 16 20 C 0.09 1.79 1.04 -10.29 -0.01 1.78 16 21 C -0.14 -1.98 6.52 31.48 0.21 -1.78 16 22 C 0.04 0.59 7.64 72.53 0.55 1.15 16 23 O -0.39 -9.84 11.65 -148.98 -1.74 -11.57 16 24 C 0.01 0.28 5.61 72.31 0.41 0.68 16 25 C -0.13 -2.74 4.19 30.52 0.13 -2.62 16 26 C -0.20 -8.37 9.96 30.62 0.30 -8.06 16 27 C -0.14 -5.87 9.47 30.62 0.29 -5.58 16 28 H 0.27 13.61 8.32 -92.71 -0.77 12.83 16 29 H 0.13 5.16 7.22 -2.39 -0.02 5.14 16 30 H 0.14 4.23 8.09 -2.39 -0.02 4.21 16 31 H 0.42 9.15 8.80 -96.75 -0.85 8.30 16 32 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.08 1.86 6.09 -2.39 -0.01 1.85 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.07 7.18 -2.39 -0.02 1.05 16 36 H 0.10 1.21 7.71 -2.39 -0.02 1.19 16 37 H 0.10 1.29 7.99 -2.38 -0.02 1.27 16 38 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.66 7.90 -2.39 -0.02 1.64 16 41 H 0.08 2.27 6.20 -2.39 -0.01 2.26 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 45 H 0.08 3.43 8.14 -2.39 -0.02 3.42 16 46 H 0.07 3.10 8.14 -2.38 -0.02 3.08 16 47 H 0.09 3.44 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -71.17 381.13 -2.91 -74.08 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.13 Total: 31.53 kcal Atomic # 6 Polarization: -63.37 SS G_CDS: 3.59 Total: -59.78 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -0.63 Total: -78.59 kcal Atomic # 8 Polarization: -108.03 SS G_CDS: -7.74 Total: -115.77 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 103.05 SS G_CDS: -0.29 Total: 102.76 kcal Total: -71.17 -2.91 -74.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423844069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.703 kcal (2) G-P(sol) polarization free energy of solvation -71.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds