Wall clock time and date at job start Wed Apr 1 2020 04:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47142 * 2 1 4 4 C 1.50701 * 109.46935 * 239.99564 * 2 1 3 5 5 H 1.08001 * 119.99821 * 239.99995 * 4 2 1 6 6 C 1.37874 * 119.99643 * 60.00688 * 4 2 1 7 7 N 1.31516 * 120.00464 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99708 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47150 * 59.99613 * 8 6 4 10 10 H 1.48505 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46939 * 299.99620 * 8 6 4 12 12 C 1.53001 * 109.46925 * 119.99776 * 2 1 3 13 13 S 1.81401 * 109.47139 * 300.00031 * 12 2 1 14 14 O 1.42100 * 110.54155 * 68.37869 * 13 12 2 15 15 O 1.42101 * 110.54150 * 291.62079 * 13 12 2 16 16 N 1.65597 * 104.44774 * 179.97438 * 13 12 2 17 17 C 1.46502 * 120.00080 * 65.00104 * 16 13 12 18 18 H 1.09003 * 112.84250 * 355.07163 * 17 16 13 19 19 C 1.53780 * 113.60767 * 126.24162 * 17 16 13 20 20 C 1.53488 * 87.06875 * 140.66749 * 19 17 16 21 21 H 1.09000 * 115.59183 * 91.71834 * 20 19 17 22 22 C 1.53682 * 114.17954 * 227.94460 * 20 19 17 23 23 C 1.55362 * 105.33657 * 66.51545 * 22 20 19 24 24 H 1.09007 * 109.69222 * 257.82309 * 23 22 20 25 25 C 1.50698 * 109.96390 * 136.86805 * 23 22 20 26 26 O 1.20827 * 120.00191 * 241.87788 * 25 23 22 27 27 O 1.34228 * 120.00036 * 61.88156 * 25 23 22 28 28 C 1.53473 * 107.48358 * 17.26751 * 23 22 20 29 29 C 1.53732 * 107.37860 * 359.57343 * 28 23 22 30 30 H 1.08996 * 115.48745 * 113.86374 * 29 28 23 31 31 H 1.08997 * 109.47160 * 300.00148 * 1 2 3 32 32 H 1.09001 * 109.47212 * 60.00113 * 1 2 3 33 33 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47048 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47186 * 299.99523 * 3 2 1 36 36 H 1.09007 * 109.47740 * 59.99826 * 3 2 1 37 37 H 0.96998 * 120.00468 * 180.02562 * 7 6 4 38 38 H 1.09002 * 109.47021 * 179.97438 * 12 2 1 39 39 H 1.08997 * 109.47220 * 60.00008 * 12 2 1 40 40 H 0.97000 * 120.00163 * 244.99781 * 16 13 12 41 41 H 1.09008 * 113.61759 * 26.12374 * 19 17 16 42 42 H 1.09000 * 113.69626 * 255.22506 * 19 17 16 43 43 H 1.09001 * 110.10159 * 185.93255 * 22 20 19 44 44 H 1.08997 * 110.09862 * 307.55383 * 22 20 19 45 45 H 0.96698 * 117.00619 * 180.02562 * 27 25 23 46 46 H 1.08998 * 109.86458 * 240.12439 * 28 23 22 47 47 H 1.08997 * 109.97630 * 119.08761 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0080 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0480 1.4101 2.8544 16 7 2.0528 -0.7407 3.9936 17 6 3.5013 -0.7981 4.2060 18 1 4.0645 -0.2966 3.4190 19 6 3.9321 -0.3927 5.6255 20 6 4.9653 -1.5252 5.5503 21 1 5.9490 -1.2411 5.1765 22 6 4.9884 -2.4393 6.7856 23 6 3.6208 -3.1763 6.7770 24 1 2.9530 -2.7200 7.5077 25 6 3.8197 -4.6338 7.1043 26 8 3.5203 -5.4808 6.2963 27 8 4.3294 -4.9911 8.2935 28 6 3.0289 -3.0336 5.3681 29 6 4.0227 -2.2090 4.5340 30 1 4.5011 -2.7421 3.7125 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.7083 1.1609 -3.4844 38 1 3.1300 -0.7216 1.2491 39 1 1.6766 -1.7489 1.2493 40 1 1.4556 -1.2150 4.5930 41 1 3.1609 -0.5544 6.3788 42 1 4.3766 0.6010 5.6814 43 1 5.8106 -3.1508 6.7097 44 1 5.0913 -1.8421 7.6916 45 1 4.4389 -5.9377 8.4578 46 1 2.0705 -2.5170 5.4196 47 1 2.8954 -4.0177 4.9189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571122906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:56 Heat of formation + Delta-G solvation = -147.722746 kcal Electronic energy + Delta-G solvation = -29675.757881 eV Core-core repulsion = 25565.134946 eV Total energy + Delta-G solvation = -4110.622935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47917 -39.98554 -36.54574 -36.48455 -36.26486 -35.29532 -34.54605 -32.00328 -31.65360 -29.08922 -26.65557 -26.27107 -25.71039 -25.22328 -24.07397 -22.48634 -20.43356 -19.56538 -18.99691 -18.75371 -18.28368 -17.50556 -17.22298 -16.44356 -16.11304 -15.89875 -15.36080 -15.29994 -14.87742 -14.68506 -14.51735 -13.80137 -13.48631 -13.17050 -13.01266 -12.79180 -12.66043 -12.49694 -12.17523 -12.07443 -11.96238 -11.80011 -11.67827 -11.41931 -11.19739 -11.15770 -11.07475 -11.04272 -10.93370 -10.86917 -10.69701 -10.46001 -10.41112 -10.33365 -10.26742 -10.08400 -9.64522 -9.60853 -9.18217 -8.66913 -8.39456 -6.02873 -4.14997 0.87989 1.85233 2.65642 3.21164 3.27424 3.32893 3.34630 3.84776 4.10309 4.21265 4.33333 4.40158 4.59282 4.66472 4.74983 4.82635 4.90797 5.06579 5.09065 5.19622 5.22430 5.30291 5.37818 5.43498 5.58113 5.65522 5.69205 5.76662 5.79204 5.87582 5.90644 6.06805 6.18695 6.32834 6.39399 6.71073 6.80260 6.91178 7.02405 7.12866 7.32178 7.50998 7.53374 7.68212 7.98621 8.10120 8.33599 8.83416 9.50464 10.98385 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.002932 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.317996 B = 9548.421534 C =10314.876843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.590 3.410 14 O -0.967 6.967 15 O -0.963 6.963 16 N -1.117 6.117 17 C 0.138 3.862 18 H 0.118 0.882 19 C -0.139 4.139 20 C -0.115 4.115 21 H 0.108 0.892 22 C -0.095 4.095 23 C -0.084 4.084 24 H 0.111 0.889 25 C 0.483 3.517 26 O -0.511 6.511 27 O -0.517 6.517 28 C -0.108 4.108 29 C -0.123 4.123 30 H 0.098 0.902 31 H 0.027 0.973 32 H 0.095 0.905 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.410 0.590 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.409 0.591 46 H 0.080 0.920 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 -7.212 20.670 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.715 4.715 13 S 2.688 3.312 14 O -0.957 6.957 15 O -0.953 6.953 16 N -0.873 5.873 17 C 0.030 3.970 18 H 0.136 0.864 19 C -0.179 4.179 20 C -0.134 4.134 21 H 0.126 0.874 22 C -0.133 4.133 23 C -0.103 4.103 24 H 0.129 0.871 25 C 0.325 3.675 26 O -0.398 6.398 27 O -0.328 6.328 28 C -0.146 4.146 29 C -0.143 4.143 30 H 0.116 0.884 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.245 0.755 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.268 0.732 46 H 0.099 0.901 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.704 -6.006 20.223 22.459 hybrid contribution 0.529 -1.995 -0.749 2.196 sum 8.233 -8.002 19.475 22.607 Atomic orbital electron populations 1.22278 0.96969 1.00637 1.02305 1.17911 0.92789 0.92161 0.89079 1.22277 0.99659 0.97849 1.02359 1.20917 1.31784 1.12092 0.89445 0.92351 1.24934 0.94886 0.94971 0.98912 1.69790 1.36242 1.22589 1.23580 0.86603 0.79143 0.79737 0.82169 1.20274 1.21198 1.20271 1.30536 1.11134 1.12928 1.16908 1.05709 0.74417 0.75349 0.75712 1.93551 1.29653 1.86719 1.85775 1.93548 1.78095 1.38158 1.85528 1.55963 1.13644 1.70333 1.47314 1.22244 0.80386 0.96119 0.98249 0.86414 1.23355 0.98244 0.98810 0.97487 1.23068 0.98612 0.96425 0.95329 0.87418 1.22124 0.94242 0.97782 0.99167 1.21848 1.00371 0.88017 1.00065 0.87110 1.23489 0.72543 0.92911 0.78512 1.90724 1.47295 1.53025 1.48782 1.84543 1.76814 1.33997 1.37492 1.21883 0.98536 1.02533 0.91643 1.23599 0.96571 0.95611 0.98560 0.88416 0.95384 0.88660 0.94477 0.94515 0.88682 0.95311 0.92690 0.86553 0.86227 0.75451 0.89415 0.90323 0.90917 0.89983 0.73237 0.90127 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 2 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 3 C -0.16 -3.99 7.77 37.15 0.29 -3.71 16 4 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -24.14 9.35 55.43 0.52 -23.62 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C -0.58 -11.10 5.01 37.16 0.19 -10.91 16 13 S 2.59 46.47 4.42 -107.50 -0.48 45.99 16 14 O -0.97 -20.02 15.70 -57.54 -0.90 -20.93 16 15 O -0.96 -19.62 15.42 -57.54 -0.89 -20.50 16 16 N -1.12 -14.22 5.47 -4.12 -0.02 -14.24 16 17 C 0.14 1.48 4.10 -67.03 -0.27 1.21 16 18 H 0.12 1.27 8.00 -51.93 -0.42 0.86 16 19 C -0.14 -1.20 7.07 -26.07 -0.18 -1.38 16 20 C -0.12 -0.84 4.82 -89.19 -0.43 -1.27 16 21 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 22 C -0.10 -0.60 6.08 -25.12 -0.15 -0.76 16 23 C -0.08 -0.61 2.91 -90.27 -0.26 -0.88 16 24 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 25 C 0.48 4.18 7.46 36.00 0.27 4.44 16 26 O -0.51 -6.16 15.95 -18.75 -0.30 -6.46 16 27 O -0.52 -3.20 13.40 -39.25 -0.53 -3.73 16 28 C -0.11 -0.96 5.45 -26.11 -0.14 -1.11 16 29 C -0.12 -1.11 5.01 -88.92 -0.45 -1.55 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 32 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 36 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.12 1.97 8.14 -51.92 -0.42 1.55 16 39 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 40 H 0.41 4.45 6.59 -34.47 -0.23 4.22 16 41 H 0.09 0.69 7.46 -51.92 -0.39 0.30 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.46 7.81 -51.93 -0.41 0.05 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.41 0.97 9.10 45.56 0.41 1.38 16 46 H 0.08 0.67 5.51 -51.93 -0.29 0.39 16 47 H 0.10 1.02 6.37 -51.93 -0.33 0.69 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -34.42 370.92 -9.51 -43.94 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.18 Total: 7.92 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: -1.31 Total: -29.58 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.50 Total: -37.86 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -2.62 Total: -51.62 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 46.47 SS G_CDS: -0.48 Total: 45.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.42 -9.51 -43.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571122906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.784 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds