Wall clock time and date at job start Wed Apr 1 2020 04:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47142 * 2 1 4 4 C 1.50701 * 109.46935 * 239.99564 * 2 1 3 5 5 H 1.08001 * 119.99821 * 239.99995 * 4 2 1 6 6 C 1.37874 * 119.99643 * 60.00688 * 4 2 1 7 7 N 1.31516 * 120.00464 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99708 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47150 * 59.99613 * 8 6 4 10 10 H 1.48505 * 109.47075 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46939 * 299.99620 * 8 6 4 12 12 C 1.53001 * 109.46925 * 119.99776 * 2 1 3 13 13 S 1.81401 * 109.47139 * 300.00031 * 12 2 1 14 14 O 1.42100 * 110.54155 * 68.37869 * 13 12 2 15 15 O 1.42101 * 110.54150 * 291.62079 * 13 12 2 16 16 N 1.65597 * 104.44774 * 179.97438 * 13 12 2 17 17 C 1.46502 * 120.00080 * 65.00104 * 16 13 12 18 18 H 1.09003 * 112.84250 * 355.07163 * 17 16 13 19 19 C 1.53780 * 113.60767 * 126.24162 * 17 16 13 20 20 C 1.53488 * 87.06875 * 140.66749 * 19 17 16 21 21 H 1.09000 * 115.59183 * 91.71834 * 20 19 17 22 22 C 1.53682 * 114.17954 * 227.94460 * 20 19 17 23 23 C 1.55362 * 105.33657 * 66.51545 * 22 20 19 24 24 H 1.09007 * 109.69222 * 257.82309 * 23 22 20 25 25 C 1.50698 * 109.96390 * 136.86805 * 23 22 20 26 26 O 1.20827 * 120.00191 * 241.87788 * 25 23 22 27 27 O 1.34228 * 120.00036 * 61.88156 * 25 23 22 28 28 C 1.53473 * 107.48358 * 17.26751 * 23 22 20 29 29 C 1.53732 * 107.37860 * 359.57343 * 28 23 22 30 30 H 1.08996 * 115.48745 * 113.86374 * 29 28 23 31 31 H 1.08997 * 109.47160 * 300.00148 * 1 2 3 32 32 H 1.09001 * 109.47212 * 60.00113 * 1 2 3 33 33 H 1.08997 * 109.47165 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47048 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47186 * 299.99523 * 3 2 1 36 36 H 1.09007 * 109.47740 * 59.99826 * 3 2 1 37 37 H 0.96998 * 120.00468 * 180.02562 * 7 6 4 38 38 H 1.09002 * 109.47021 * 179.97438 * 12 2 1 39 39 H 1.08997 * 109.47220 * 60.00008 * 12 2 1 40 40 H 0.97000 * 120.00163 * 244.99781 * 16 13 12 41 41 H 1.09008 * 113.61759 * 26.12374 * 19 17 16 42 42 H 1.09000 * 113.69626 * 255.22506 * 19 17 16 43 43 H 1.09001 * 110.10159 * 185.93255 * 22 20 19 44 44 H 1.08997 * 110.09862 * 307.55383 * 22 20 19 45 45 H 0.96698 * 117.00619 * 180.02562 * 27 25 23 46 46 H 1.08998 * 109.86458 * 240.12439 * 28 23 22 47 47 H 1.08997 * 109.97630 * 119.08761 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0080 10 1 1.8269 -0.4200 -5.2204 11 1 3.8075 -1.1192 -4.0076 12 6 2.0400 -0.7212 1.2493 13 16 1.4353 0.1340 2.7304 14 8 0.0279 -0.0183 2.8544 15 8 2.0480 1.4101 2.8544 16 7 2.0528 -0.7407 3.9936 17 6 3.5013 -0.7981 4.2060 18 1 4.0645 -0.2966 3.4190 19 6 3.9321 -0.3927 5.6255 20 6 4.9653 -1.5252 5.5503 21 1 5.9490 -1.2411 5.1765 22 6 4.9884 -2.4393 6.7856 23 6 3.6208 -3.1763 6.7770 24 1 2.9530 -2.7200 7.5077 25 6 3.8197 -4.6338 7.1043 26 8 3.5203 -5.4808 6.2963 27 8 4.3294 -4.9911 8.2935 28 6 3.0289 -3.0336 5.3681 29 6 4.0227 -2.2090 4.5340 30 1 4.5011 -2.7421 3.7125 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.7083 1.1609 -3.4844 38 1 3.1300 -0.7216 1.2491 39 1 1.6766 -1.7489 1.2493 40 1 1.4556 -1.2150 4.5930 41 1 3.1609 -0.5544 6.3788 42 1 4.3766 0.6010 5.6814 43 1 5.8106 -3.1508 6.7097 44 1 5.0913 -1.8421 7.6916 45 1 4.4389 -5.9377 8.4578 46 1 2.0705 -2.5170 5.4196 47 1 2.8954 -4.0177 4.9189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571122906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:55 Heat of formation + Delta-G solvation = -171.891944 kcal Electronic energy + Delta-G solvation = -29676.805936 eV Core-core repulsion = 25565.134946 eV Total energy + Delta-G solvation = -4111.670990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.13635 -40.65644 -38.11413 -38.05749 -37.12263 -36.85639 -35.40713 -33.62986 -32.79148 -29.73372 -28.30669 -27.68306 -27.24723 -26.93666 -24.76948 -23.20242 -21.46024 -20.97830 -20.04925 -19.73702 -18.91342 -18.74822 -18.03903 -17.83975 -17.28242 -16.89997 -16.83552 -16.62016 -16.16698 -15.94582 -15.33590 -14.94942 -14.70519 -14.42687 -14.40389 -14.11671 -13.83817 -13.54965 -13.44199 -13.37347 -13.00174 -12.95986 -12.86252 -12.79283 -12.58924 -12.55198 -12.46437 -12.28666 -12.17848 -12.15028 -11.95285 -11.81992 -11.68256 -11.59007 -11.55500 -11.35078 -11.16732 -11.03499 -10.62186 -10.40845 -10.15025 -8.02736 -6.21464 -0.56331 1.22290 1.44959 1.45530 1.52620 1.93849 2.16039 2.44250 2.88163 3.19359 3.23061 3.34730 3.54455 3.60331 3.86347 4.00143 4.06944 4.10467 4.21537 4.27658 4.42077 4.48191 4.60287 4.61418 4.71618 4.78388 4.82270 4.86963 4.87876 4.99396 5.03168 5.07306 5.09987 5.12941 5.23420 5.25895 5.39499 5.42371 5.51782 5.59911 5.64766 5.68099 5.98379 6.12333 6.16681 6.34971 6.83331 7.01598 7.46868 8.96841 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016030 B = 0.002932 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.317996 B = 9548.421534 C =10314.876843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.070 3.930 3 C -0.159 4.159 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.271 1.271 12 C -0.588 4.588 13 S 2.612 3.388 14 O -0.997 6.997 15 O -0.988 6.988 16 N -1.099 6.099 17 C 0.117 3.883 18 H 0.116 0.884 19 C -0.136 4.136 20 C -0.102 4.102 21 H 0.121 0.879 22 C -0.089 4.089 23 C -0.084 4.084 24 H 0.132 0.868 25 C 0.488 3.512 26 O -0.553 6.553 27 O -0.510 6.510 28 C -0.111 4.111 29 C -0.124 4.124 30 H 0.095 0.905 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.261 0.739 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.421 0.579 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.426 0.574 46 H 0.084 0.916 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.041 -8.092 22.647 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 C -0.217 4.217 4 C -0.558 4.558 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.720 4.720 13 S 2.709 3.291 14 O -0.987 6.987 15 O -0.977 6.977 16 N -0.860 5.860 17 C 0.010 3.990 18 H 0.134 0.866 19 C -0.176 4.176 20 C -0.121 4.121 21 H 0.139 0.861 22 C -0.127 4.127 23 C -0.103 4.103 24 H 0.150 0.850 25 C 0.332 3.668 26 O -0.444 6.444 27 O -0.323 6.323 28 C -0.149 4.149 29 C -0.145 4.145 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.151 0.849 40 H 0.259 0.741 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.120 0.880 45 H 0.287 0.713 46 H 0.102 0.898 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.369 -6.901 22.220 25.082 hybrid contribution 0.040 -1.759 -1.267 2.168 sum 9.409 -8.659 20.952 24.546 Atomic orbital electron populations 1.22219 0.97984 1.00356 1.01336 1.17892 0.92153 0.92199 0.90906 1.22200 0.99884 0.98275 1.01361 1.21291 1.31710 1.12305 0.90525 0.91959 1.25667 0.95185 0.95642 1.01635 1.69935 1.37134 1.23695 1.23892 0.85692 0.78825 0.78669 0.78906 1.19890 1.21313 1.19569 1.30482 1.12537 1.13232 1.15727 1.04739 0.73434 0.75030 0.75850 1.93501 1.31810 1.87150 1.86258 1.93512 1.78387 1.39900 1.85940 1.55502 1.15027 1.69892 1.45531 1.22671 0.78658 0.97867 0.99839 0.86618 1.23383 0.98811 0.99466 0.95899 1.23046 0.98552 0.95429 0.95078 0.86117 1.22123 0.93521 0.97610 0.99430 1.21914 1.01420 0.87529 0.99443 0.85025 1.23722 0.71554 0.93109 0.78421 1.90718 1.49274 1.54229 1.50145 1.84504 1.75965 1.35682 1.36137 1.21861 0.98895 1.01390 0.92714 1.23603 0.97090 0.94662 0.99121 0.88717 0.94869 0.91069 0.94340 0.93964 0.91176 0.94763 0.92924 0.84522 0.84888 0.74072 0.88338 0.90094 0.90687 0.88032 0.71309 0.89798 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.09 7.77 71.98 0.56 -7.53 16 2 C 0.07 3.40 0.52 -52.93 -0.03 3.37 16 3 C -0.16 -7.86 7.77 71.98 0.56 -7.30 16 4 C -0.52 -27.13 8.01 25.60 0.21 -26.92 16 5 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 6 C 0.02 0.96 5.15 84.65 0.44 1.40 16 7 N -0.91 -50.54 9.35 21.45 0.20 -50.34 16 8 Si 0.95 42.32 29.54 68.60 2.03 44.34 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 C -0.59 -21.93 5.01 71.98 0.36 -21.57 16 13 S 2.61 91.65 4.42 -56.49 -0.25 91.40 16 14 O -1.00 -40.92 15.70 -127.65 -2.00 -42.92 16 15 O -0.99 -39.50 15.42 -127.65 -1.97 -41.47 16 16 N -1.10 -26.22 5.47 -166.95 -0.91 -27.13 16 17 C 0.12 2.27 4.10 45.57 0.19 2.45 16 18 H 0.12 2.30 8.00 -2.39 -0.02 2.28 16 19 C -0.14 -1.94 7.07 31.02 0.22 -1.72 16 20 C -0.10 -1.17 4.82 -9.87 -0.05 -1.21 16 21 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 22 C -0.09 -0.82 6.08 31.64 0.19 -0.63 16 23 C -0.08 -1.00 2.91 -10.57 -0.03 -1.03 16 24 H 0.13 1.05 8.14 -2.38 -0.02 1.03 16 25 C 0.49 7.51 7.46 71.24 0.53 8.04 16 26 O -0.55 -12.96 15.95 21.96 0.35 -12.61 16 27 O -0.51 -5.02 13.40 -51.40 -0.69 -5.71 16 28 C -0.11 -1.78 5.45 31.00 0.17 -1.61 16 29 C -0.12 -1.99 5.01 -9.69 -0.05 -2.04 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.58 5.46 -2.39 -0.01 1.57 16 32 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 33 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 36 H 0.03 1.60 5.46 -2.38 -0.01 1.59 16 37 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 39 H 0.13 4.54 8.14 -2.39 -0.02 4.52 16 40 H 0.42 8.39 6.59 -96.75 -0.64 7.76 16 41 H 0.10 1.20 7.46 -2.38 -0.02 1.18 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 0.70 7.81 -2.39 -0.02 0.68 16 44 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.43 1.08 9.10 -74.06 -0.67 0.40 16 46 H 0.08 1.24 5.51 -2.39 -0.01 1.23 16 47 H 0.08 1.58 6.37 -2.39 -0.02 1.56 16 Total: -1.00 -74.28 370.92 -0.28 -74.56 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.30 Total: 26.19 kcal Atomic # 6 Polarization: -59.57 SS G_CDS: 3.27 Total: -56.31 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -0.71 Total: -77.47 kcal Atomic # 8 Polarization: -98.40 SS G_CDS: -4.31 Total: -102.71 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 91.65 SS G_CDS: -0.25 Total: 91.40 kcal Total: -74.28 -0.28 -74.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571122906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.337 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds