Wall clock time and date at job start Wed Apr 1 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00303 * 3 2 1 5 5 H 1.48504 * 109.46885 * 29.99778 * 3 2 1 6 6 H 1.48494 * 109.47545 * 150.00357 * 3 2 1 7 7 C 1.38652 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00388 * 359.97438 * 7 2 1 9 9 O 1.34838 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.35743 * 117.00197 * 185.41745 * 9 7 2 11 11 C 1.38902 * 120.06948 * 5.68730 * 10 9 7 12 12 C 1.38075 * 119.93024 * 180.02562 * 11 10 9 13 13 C 1.38319 * 120.07064 * 359.74841 * 12 11 10 14 14 C 1.38290 * 120.13683 * 0.50786 * 13 12 11 15 15 C 1.50699 * 119.96438 * 179.76550 * 14 13 12 16 16 C 1.50700 * 109.47378 * 269.72175 * 15 14 13 17 17 O 1.21277 * 119.99974 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00072 * 180.02562 * 16 15 14 19 19 C 1.45312 * 118.81889 * 359.97438 * 18 16 15 20 20 C 1.51710 * 111.99379 * 124.05288 * 19 18 16 21 21 C 1.52103 * 112.46344 * 41.34415 * 20 19 18 22 22 H 1.08998 * 115.20048 * 129.10357 * 21 20 19 23 23 C 1.53809 * 115.97813 * 270.68945 * 21 20 19 24 24 H 1.09006 * 117.53970 * 219.97209 * 23 21 20 25 25 C 1.50701 * 117.54699 * 5.24230 * 23 21 20 26 26 O 1.20819 * 120.00234 * 114.89640 * 25 23 21 27 27 O 1.34232 * 119.99639 * 294.89892 * 25 23 21 28 28 C 1.49843 * 60.04445 * 112.33111 * 23 21 20 29 29 H 1.09005 * 116.10353 * 106.47100 * 28 23 21 30 30 C 1.44958 * 117.63434 * 177.98611 * 18 16 15 31 31 C 1.38113 * 120.06600 * 359.49139 * 14 13 12 32 32 H 0.96993 * 120.00029 * 0.02562 * 1 2 3 33 33 H 1.08000 * 120.03435 * 0.04325 * 11 10 9 34 34 H 1.08003 * 119.96438 * 180.02562 * 12 11 10 35 35 H 1.08004 * 119.93717 * 180.25295 * 13 12 11 36 36 H 1.09002 * 109.46985 * 149.72080 * 15 14 13 37 37 H 1.09001 * 109.47144 * 29.72564 * 15 14 13 38 38 H 1.09004 * 108.97601 * 3.40834 * 19 18 16 39 39 H 1.09002 * 108.97983 * 244.70290 * 19 18 16 40 40 H 1.08998 * 108.88458 * 162.11226 * 20 19 18 41 41 H 1.09004 * 108.88676 * 280.57463 * 20 19 18 42 42 H 0.96705 * 116.99898 * 179.97438 * 27 25 23 43 43 H 1.09001 * 107.26753 * 99.47583 * 30 18 16 44 44 H 1.09007 * 110.58759 * 340.60224 * 30 18 16 45 45 H 1.08001 * 120.03652 * 180.27684 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9735 -2.4048 -0.1158 11 6 3.2236 -3.5515 -0.3441 12 6 3.8533 -4.7748 -0.4598 13 6 5.2299 -4.8585 -0.3537 14 6 5.9788 -3.7195 -0.1211 15 6 7.4779 -3.8159 -0.0008 16 6 7.8526 -4.0448 1.4408 17 8 6.9875 -4.1225 2.2872 18 7 9.1491 -4.1631 1.7894 19 6 10.1645 -4.0664 0.7544 20 6 11.1838 -2.9845 1.0577 21 6 11.5874 -2.9609 2.5240 22 1 12.6614 -2.9702 2.7100 23 6 10.7320 -2.0735 3.4441 24 1 11.2488 -1.4983 4.2123 25 6 9.5167 -1.4147 2.8439 26 8 8.4127 -1.7178 3.2297 27 8 9.6610 -0.4911 1.8806 28 6 10.6968 -3.5637 3.5978 29 1 11.2122 -3.9683 4.4689 30 6 9.4539 -4.3376 3.1958 31 6 5.3548 -2.4929 -0.0044 32 1 -0.4850 0.8400 -0.0004 33 1 2.1491 -3.4862 -0.4314 34 1 3.2708 -5.6667 -0.6378 35 1 5.7206 -5.8159 -0.4486 36 1 7.9309 -2.8884 -0.3511 37 1 7.8382 -4.6475 -0.6064 38 1 9.6811 -3.8415 -0.1964 39 1 10.6782 -5.0242 0.6712 40 1 12.0721 -3.1564 0.4500 41 1 10.7596 -2.0159 0.7930 42 1 8.8524 -0.0966 1.5260 43 1 9.6265 -5.4012 3.3600 44 1 8.6160 -4.0127 3.8128 45 1 5.9405 -1.6030 0.1728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:55 Heat of formation + Delta-G solvation = -87.442314 kcal Electronic energy + Delta-G solvation = -30866.440215 eV Core-core repulsion = 26622.987285 eV Total energy + Delta-G solvation = -4243.452930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54387 -39.84821 -39.04471 -38.19482 -36.55561 -36.19109 -34.97629 -32.49512 -32.26125 -31.68596 -29.42868 -28.26414 -26.50098 -25.17181 -24.97438 -24.38126 -21.83209 -21.21767 -20.64125 -19.97377 -18.52949 -17.95079 -17.66916 -17.45629 -17.11817 -16.82560 -16.38267 -15.80758 -15.51502 -15.12438 -14.96302 -14.59108 -14.17534 -14.04526 -13.98863 -13.61297 -13.50180 -13.29399 -13.10216 -13.05525 -12.63422 -12.35555 -12.32442 -12.14082 -12.08447 -11.65905 -11.60148 -11.32287 -11.21743 -10.78628 -10.76438 -10.72165 -10.67163 -10.56122 -10.24737 -10.10332 -9.61209 -9.34871 -8.81259 -8.72891 -8.06948 -7.28788 -6.35216 -4.01378 2.07953 2.08795 2.35693 2.70871 2.76276 2.95904 3.17079 3.25821 3.28208 3.44377 4.01702 4.12162 4.28982 4.36665 4.40631 4.59992 4.68168 4.73021 4.79082 4.91468 5.05547 5.10190 5.13336 5.16976 5.30782 5.34068 5.35081 5.39810 5.47790 5.56839 5.60087 5.73207 5.79901 5.85943 5.90760 6.18878 6.32020 6.41920 6.52009 6.59723 6.85614 7.17189 7.28128 7.29542 7.38973 7.67502 7.80277 7.87460 8.11026 8.33269 9.00530 9.64111 10.72914 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003253 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.383040 B = 8605.687226 C = 9874.400782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.386 4.386 8 H 0.106 0.894 9 O -0.220 6.220 10 C 0.161 3.839 11 C -0.217 4.217 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.510 3.490 17 O -0.498 6.498 18 N -0.618 5.618 19 C 0.108 3.892 20 C -0.123 4.123 21 C -0.119 4.119 22 H 0.119 0.881 23 C -0.158 4.158 24 H 0.141 0.859 25 C 0.500 3.500 26 O -0.479 6.479 27 O -0.518 6.518 28 C -0.121 4.121 29 H 0.126 0.874 30 C 0.136 3.864 31 C -0.172 4.172 32 H 0.278 0.722 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.412 0.588 43 H 0.065 0.935 44 H 0.111 0.889 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.119 -7.285 1.828 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.462 4.462 8 H 0.123 0.877 9 O -0.125 6.125 10 C 0.109 3.891 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.207 4.207 14 C -0.035 4.035 15 C -0.133 4.133 16 C 0.297 3.703 17 O -0.370 6.370 18 N -0.354 5.354 19 C -0.016 4.016 20 C -0.161 4.161 21 C -0.137 4.137 22 H 0.137 0.863 23 C -0.177 4.177 24 H 0.159 0.841 25 C 0.340 3.660 26 O -0.364 6.364 27 O -0.331 6.331 28 C -0.140 4.140 29 H 0.144 0.856 30 C 0.014 3.986 31 C -0.191 4.191 32 H 0.089 0.911 33 H 0.150 0.850 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.271 0.729 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 27.553 -7.243 2.598 28.607 hybrid contribution -0.202 1.077 -0.090 1.099 sum 27.351 -6.166 2.508 28.150 Atomic orbital electron populations 1.69647 1.05533 1.28353 1.48524 1.24448 0.95011 0.98739 0.95839 0.86190 0.80409 0.81557 0.78803 1.19949 1.20809 1.18415 1.20759 0.76945 0.96595 1.51911 0.87715 1.83574 1.22546 1.25669 1.80746 1.19011 0.91415 0.85667 0.93020 1.21296 1.01120 0.92366 1.08846 1.20728 0.94074 0.96631 0.97990 1.20406 0.93948 0.96636 1.09698 1.18655 0.92183 0.93136 0.99516 1.20634 0.95180 1.03683 0.93808 1.20768 0.81891 0.76339 0.91299 1.90762 1.47908 1.46542 1.51768 1.47258 1.06295 1.74789 1.07032 1.21032 0.90153 0.99129 0.91238 1.21254 0.99963 1.01047 0.93865 1.22181 0.97628 1.01752 0.92189 0.86278 1.21602 0.97348 0.94275 1.04480 0.84121 1.22202 0.89945 0.76869 0.77026 1.90888 1.26992 1.59783 1.58730 1.84473 1.43361 1.53416 1.51883 1.21855 0.99061 0.92185 1.00853 0.85641 1.20398 0.96834 0.98639 0.82769 1.19872 0.91977 0.97054 1.10184 0.91149 0.85000 0.87184 0.87784 0.88798 0.88443 0.89032 0.91397 0.89477 0.89584 0.72889 0.91644 0.87076 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.25 13.96 55.48 0.77 -25.48 16 2 C 0.06 1.81 5.49 -17.52 -0.10 1.71 16 3 Si 0.90 22.36 28.62 -169.99 -4.86 17.50 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.39 -11.35 9.90 30.89 0.31 -11.04 16 8 H 0.11 3.15 5.53 -52.49 -0.29 2.86 16 9 O -0.22 -6.10 8.59 0.05 0.00 -6.10 16 10 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.22 -5.00 9.13 -39.40 -0.36 -5.36 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.19 -3.41 9.70 -39.53 -0.38 -3.79 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.25 4.10 -29.04 -0.12 -1.37 16 16 C 0.51 7.67 6.61 -10.99 -0.07 7.60 16 17 O -0.50 -10.10 14.97 5.55 0.08 -10.01 16 18 N -0.62 -6.84 2.08 -177.33 -0.37 -7.21 16 19 C 0.11 0.78 6.26 -5.33 -0.03 0.75 16 20 C -0.12 -0.75 5.52 -27.84 -0.15 -0.90 16 21 C -0.12 -0.71 6.25 -91.18 -0.57 -1.28 16 22 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 23 C -0.16 -1.29 6.20 -92.92 -0.58 -1.87 16 24 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 25 C 0.50 5.84 5.88 36.01 0.21 6.06 16 26 O -0.48 -7.87 14.58 -19.70 -0.29 -8.16 16 27 O -0.52 -5.01 11.71 -39.26 -0.46 -5.47 16 28 C -0.12 -0.90 5.91 -93.30 -0.55 -1.46 16 29 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 30 C 0.14 1.47 5.13 -5.46 -0.03 1.44 16 31 C -0.17 -3.67 9.65 -39.40 -0.38 -4.05 16 32 H 0.28 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.13 3.16 5.71 -52.49 -0.30 2.86 16 34 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 35 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.09 1.06 7.60 -51.93 -0.39 0.67 16 37 H 0.10 1.00 7.73 -51.93 -0.40 0.60 16 38 H 0.09 0.58 5.50 -51.93 -0.29 0.30 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.09 0.64 5.72 -51.93 -0.30 0.34 16 42 H 0.41 3.17 9.10 45.56 0.41 3.59 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.11 1.62 6.09 -51.93 -0.32 1.30 16 45 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -37.54 366.94 -8.32 -45.86 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -4.81 Total: 6.37 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -3.92 Total: -12.84 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.41 Total: -32.68 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.66 Total: -29.74 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.86 Total: 17.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.54 -8.32 -45.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.582 kcal (2) G-P(sol) polarization free energy of solvation -37.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds