Wall clock time and date at job start Wed Apr 1 2020 03:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86799 * 119.99993 * 2 1 4 4 H 1.48502 * 109.47066 * 270.00303 * 3 2 1 5 5 H 1.48504 * 109.46885 * 29.99778 * 3 2 1 6 6 H 1.48494 * 109.47545 * 150.00357 * 3 2 1 7 7 C 1.38652 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00388 * 359.97438 * 7 2 1 9 9 O 1.34838 * 120.00255 * 179.97438 * 7 2 1 10 10 C 1.35743 * 117.00197 * 185.41745 * 9 7 2 11 11 C 1.38902 * 120.06948 * 5.68730 * 10 9 7 12 12 C 1.38075 * 119.93024 * 180.02562 * 11 10 9 13 13 C 1.38319 * 120.07064 * 359.74841 * 12 11 10 14 14 C 1.38290 * 120.13683 * 0.50786 * 13 12 11 15 15 C 1.50699 * 119.96438 * 179.76550 * 14 13 12 16 16 C 1.50700 * 109.47378 * 269.72175 * 15 14 13 17 17 O 1.21277 * 119.99974 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00072 * 180.02562 * 16 15 14 19 19 C 1.45312 * 118.81889 * 359.97438 * 18 16 15 20 20 C 1.51710 * 111.99379 * 124.05288 * 19 18 16 21 21 C 1.52103 * 112.46344 * 41.34415 * 20 19 18 22 22 H 1.08998 * 115.20048 * 129.10357 * 21 20 19 23 23 C 1.53809 * 115.97813 * 270.68945 * 21 20 19 24 24 H 1.09006 * 117.53970 * 219.97209 * 23 21 20 25 25 C 1.50701 * 117.54699 * 5.24230 * 23 21 20 26 26 O 1.20819 * 120.00234 * 114.89640 * 25 23 21 27 27 O 1.34232 * 119.99639 * 294.89892 * 25 23 21 28 28 C 1.49843 * 60.04445 * 112.33111 * 23 21 20 29 29 H 1.09005 * 116.10353 * 106.47100 * 28 23 21 30 30 C 1.44958 * 117.63434 * 177.98611 * 18 16 15 31 31 C 1.38113 * 120.06600 * 359.49139 * 14 13 12 32 32 H 0.96993 * 120.00029 * 0.02562 * 1 2 3 33 33 H 1.08000 * 120.03435 * 0.04325 * 11 10 9 34 34 H 1.08003 * 119.96438 * 180.02562 * 12 11 10 35 35 H 1.08004 * 119.93717 * 180.25295 * 13 12 11 36 36 H 1.09002 * 109.46985 * 149.72080 * 15 14 13 37 37 H 1.09001 * 109.47144 * 29.72564 * 15 14 13 38 38 H 1.09004 * 108.97601 * 3.40834 * 19 18 16 39 39 H 1.09002 * 108.97983 * 244.70290 * 19 18 16 40 40 H 1.08998 * 108.88458 * 162.11226 * 20 19 18 41 41 H 1.09004 * 108.88676 * 280.57463 * 20 19 18 42 42 H 0.96705 * 116.99898 * 179.97438 * 27 25 23 43 43 H 1.09001 * 107.26753 * 99.47583 * 30 18 16 44 44 H 1.09007 * 110.58759 * 340.60224 * 30 18 16 45 45 H 1.08001 * 120.03652 * 180.27684 * 31 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9735 -2.4048 -0.1158 11 6 3.2236 -3.5515 -0.3441 12 6 3.8533 -4.7748 -0.4598 13 6 5.2299 -4.8585 -0.3537 14 6 5.9788 -3.7195 -0.1211 15 6 7.4779 -3.8159 -0.0008 16 6 7.8526 -4.0448 1.4408 17 8 6.9875 -4.1225 2.2872 18 7 9.1491 -4.1631 1.7894 19 6 10.1645 -4.0664 0.7544 20 6 11.1838 -2.9845 1.0577 21 6 11.5874 -2.9609 2.5240 22 1 12.6614 -2.9702 2.7100 23 6 10.7320 -2.0735 3.4441 24 1 11.2488 -1.4983 4.2123 25 6 9.5167 -1.4147 2.8439 26 8 8.4127 -1.7178 3.2297 27 8 9.6610 -0.4911 1.8806 28 6 10.6968 -3.5637 3.5978 29 1 11.2122 -3.9683 4.4689 30 6 9.4539 -4.3376 3.1958 31 6 5.3548 -2.4929 -0.0044 32 1 -0.4850 0.8400 -0.0004 33 1 2.1491 -3.4862 -0.4314 34 1 3.2708 -5.6667 -0.6378 35 1 5.7206 -5.8159 -0.4486 36 1 7.9309 -2.8884 -0.3511 37 1 7.8382 -4.6475 -0.6064 38 1 9.6811 -3.8415 -0.1964 39 1 10.6782 -5.0242 0.6712 40 1 12.0721 -3.1564 0.4500 41 1 10.7596 -2.0159 0.7930 42 1 8.8524 -0.0966 1.5260 43 1 9.6265 -5.4012 3.3600 44 1 8.6160 -4.0127 3.8128 45 1 5.9405 -1.6030 0.1728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:54 Heat of formation + Delta-G solvation = -113.177281 kcal Electronic energy + Delta-G solvation = -30867.556167 eV Core-core repulsion = 26622.987285 eV Total energy + Delta-G solvation = -4244.568882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.32985 -41.11071 -40.54319 -39.18896 -38.23412 -37.09859 -35.85785 -34.51411 -33.64751 -32.48573 -31.13698 -29.42860 -27.64749 -27.11671 -25.76528 -25.05865 -23.43591 -22.73351 -21.42067 -21.10423 -19.68906 -19.26400 -18.88722 -18.73897 -18.36980 -17.60920 -17.30521 -16.92829 -16.78798 -16.62435 -16.20776 -15.81313 -15.67098 -15.56991 -15.12054 -14.89796 -14.74332 -14.48688 -14.26383 -14.08091 -13.98852 -13.79864 -13.73273 -13.18434 -13.08069 -12.85301 -12.70970 -12.53624 -12.49014 -12.45464 -12.37214 -11.96861 -11.82200 -11.59660 -11.36015 -11.10491 -10.98892 -10.93161 -10.73604 -9.69929 -9.57889 -9.09583 -8.53206 -6.25973 0.45599 0.66788 1.22695 1.25967 1.31339 1.47785 1.68736 2.05162 2.07810 2.25182 2.55791 2.73728 3.02699 3.08574 3.45862 3.60597 3.66826 3.80013 3.88282 4.01585 4.07273 4.23397 4.24577 4.32285 4.35579 4.41556 4.50455 4.52653 4.60004 4.65730 4.68959 4.82242 4.87183 4.90661 4.95956 4.97207 5.16754 5.21287 5.36510 5.37139 5.61163 5.61709 5.68714 5.71133 5.73369 5.88220 6.21002 6.40348 6.80893 6.97547 7.29013 7.55635 8.58959 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003253 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.383040 B = 8605.687226 C = 9874.400782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.269 1.269 7 C -0.401 4.401 8 H 0.078 0.922 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.077 4.077 13 C -0.171 4.171 14 C -0.027 4.027 15 C -0.090 4.090 16 C 0.505 3.495 17 O -0.566 6.566 18 N -0.606 5.606 19 C 0.095 3.905 20 C -0.127 4.127 21 C -0.091 4.091 22 H 0.155 0.845 23 C -0.179 4.179 24 H 0.162 0.838 25 C 0.499 3.501 26 O -0.537 6.537 27 O -0.511 6.511 28 C -0.126 4.126 29 H 0.153 0.847 30 C 0.132 3.868 31 C -0.180 4.180 32 H 0.285 0.715 33 H 0.108 0.892 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.417 0.583 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.681 -8.530 0.709 34.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.794 3.206 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.193 1.193 7 C -0.477 4.477 8 H 0.095 0.905 9 O -0.155 6.155 10 C 0.071 3.929 11 C -0.259 4.259 12 C -0.095 4.095 13 C -0.189 4.189 14 C -0.028 4.028 15 C -0.129 4.129 16 C 0.294 3.706 17 O -0.443 6.443 18 N -0.340 5.340 19 C -0.026 4.026 20 C -0.165 4.165 21 C -0.109 4.109 22 H 0.173 0.827 23 C -0.197 4.197 24 H 0.180 0.820 25 C 0.342 3.658 26 O -0.426 6.426 27 O -0.324 6.324 28 C -0.144 4.144 29 H 0.171 0.829 30 C 0.009 3.991 31 C -0.199 4.199 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.090 0.910 42 H 0.277 0.723 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 33.209 -8.511 1.436 34.312 hybrid contribution -1.714 1.194 0.241 2.103 sum 31.495 -7.317 1.677 32.377 Atomic orbital electron populations 1.69729 1.06857 1.29629 1.50235 1.25294 0.95932 1.02160 0.95479 0.85212 0.78571 0.77332 0.79532 1.18347 1.18941 1.19350 1.20704 0.78109 0.96132 1.52739 0.90478 1.83507 1.21260 1.27381 1.83341 1.19581 0.92954 0.85354 0.95055 1.21325 1.00186 0.93849 1.10567 1.21118 0.95387 0.96147 0.96816 1.20998 0.93310 0.98426 1.06204 1.19211 0.95263 0.91723 0.96603 1.20755 0.91555 1.06858 0.93742 1.21024 0.82727 0.75649 0.91212 1.90751 1.50061 1.50066 1.53446 1.47320 1.05841 1.72760 1.08042 1.21444 0.89716 1.01126 0.90343 1.21350 1.00860 0.99790 0.94470 1.22445 0.98895 0.98098 0.91452 0.82714 1.21825 0.96920 0.94703 1.06285 0.82017 1.22997 0.90348 0.76172 0.76277 1.90893 1.29516 1.61624 1.60571 1.84479 1.43674 1.52909 1.51316 1.21906 0.98219 0.91362 1.02944 0.82901 1.20351 0.96786 0.99846 0.82112 1.20182 0.90690 0.98988 1.10026 0.90503 0.87433 0.84004 0.83385 0.86415 0.83921 0.87825 0.88700 0.86028 0.91006 0.72281 0.90351 0.91788 0.86679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.61 13.96 21.61 0.30 -57.31 16 2 C 0.01 0.58 5.49 84.83 0.47 1.04 16 3 Si 0.97 47.80 28.62 68.60 1.96 49.77 16 4 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.26 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 7 C -0.40 -25.26 9.90 67.92 0.67 -24.58 16 8 H 0.08 5.11 5.53 -2.91 -0.02 5.09 16 9 O -0.25 -14.58 8.59 -22.74 -0.20 -14.78 16 10 C 0.12 6.20 6.65 22.58 0.15 6.35 16 11 C -0.24 -11.68 9.13 22.39 0.20 -11.48 16 12 C -0.08 -2.95 10.04 22.25 0.22 -2.73 16 13 C -0.17 -5.75 9.70 22.30 0.22 -5.53 16 14 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 15 C -0.09 -2.10 4.10 29.10 0.12 -1.98 16 16 C 0.51 14.45 6.61 87.66 0.58 15.03 16 17 O -0.57 -23.42 14.97 -3.01 -0.04 -23.47 16 18 N -0.61 -11.89 2.08 -833.35 -1.74 -13.63 16 19 C 0.10 0.91 6.26 86.18 0.54 1.45 16 20 C -0.13 -0.89 5.52 29.87 0.16 -0.73 16 21 C -0.09 -0.64 6.25 -11.16 -0.07 -0.71 16 22 H 0.16 0.11 8.14 -2.39 -0.02 0.09 16 23 C -0.18 -2.47 6.20 -12.28 -0.08 -2.54 16 24 H 0.16 1.51 8.14 -2.38 -0.02 1.49 16 25 C 0.50 11.36 5.88 71.24 0.42 11.78 16 26 O -0.54 -18.40 14.58 22.90 0.33 -18.07 16 27 O -0.51 -9.32 11.71 -51.44 -0.60 -9.93 16 28 C -0.13 -1.51 5.91 -12.53 -0.07 -1.58 16 29 H 0.15 0.97 8.14 -2.38 -0.02 0.95 16 30 C 0.13 2.68 5.13 86.28 0.44 3.12 16 31 C -0.18 -7.82 9.65 22.39 0.22 -7.61 16 32 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16 33 H 0.11 5.67 5.71 -2.91 -0.02 5.65 16 34 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 35 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 36 H 0.12 2.22 7.60 -2.39 -0.02 2.21 16 37 H 0.14 2.07 7.73 -2.39 -0.02 2.05 16 38 H 0.10 0.76 5.50 -2.39 -0.01 0.74 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 41 H 0.07 0.77 5.72 -2.39 -0.01 0.76 16 42 H 0.42 6.38 9.10 -74.05 -0.67 5.71 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.96 6.09 -2.38 -0.01 1.95 16 45 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -92.08 366.94 4.50 -87.58 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.38 Total: 21.57 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.11 Total: -21.74 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: -1.44 Total: -70.94 kcal Atomic # 8 Polarization: -65.73 SS G_CDS: -0.51 Total: -66.24 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.96 Total: 49.77 kcal Total: -92.08 4.50 -87.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.601 kcal (2) G-P(sol) polarization free energy of solvation -92.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds