Wall clock time and date at job start Wed Apr 1 2020 02:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48504 * 109.47042 * 239.99533 * 3 2 1 5 5 H 1.48500 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47682 * 119.99533 * 3 2 1 7 7 C 1.37870 * 120.00331 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00024 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47455 * 179.97438 * 9 7 2 11 11 C 1.46506 * 120.00145 * 284.18245 * 10 9 7 12 12 C 1.52994 * 109.47158 * 265.10008 * 11 10 9 13 13 C 1.53003 * 117.49695 * 247.10836 * 12 11 10 14 14 C 1.52999 * 117.50094 * 178.44735 * 12 11 10 15 15 C 1.34773 * 120.00240 * 104.17843 * 10 9 7 16 16 O 1.21570 * 120.00501 * 186.68425 * 15 10 9 17 17 C 1.47717 * 119.99867 * 6.68627 * 15 10 9 18 18 C 1.39465 * 120.10807 * 325.74161 * 17 15 10 19 19 C 1.38956 * 119.75841 * 179.97438 * 18 17 15 20 20 C 1.48469 * 120.01059 * 180.02562 * 19 18 17 21 21 N 1.34047 * 126.67530 * 359.66470 * 20 19 18 22 22 N 1.28978 * 107.26760 * 179.89116 * 21 20 19 23 23 N 1.28722 * 108.94511 * 0.37859 * 22 21 20 24 24 H 0.97006 * 125.34378 * 179.78029 * 23 22 21 25 25 N 1.28870 * 109.32055 * 359.76060 * 23 22 21 26 26 C 1.39502 * 119.97643 * 0.02562 * 19 18 17 27 27 C 1.37980 * 120.22252 * 359.97438 * 26 19 18 28 28 C 1.38400 * 120.24867 * 0.02562 * 27 26 19 29 29 F 1.35096 * 119.99699 * 180.02562 * 28 27 26 30 30 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.46871 * 59.99915 * 9 7 2 32 32 H 1.08998 * 109.46935 * 299.99942 * 9 7 2 33 33 H 1.09000 * 109.46774 * 25.09909 * 11 10 9 34 34 H 1.09000 * 109.46934 * 145.09449 * 11 10 9 35 35 H 1.08999 * 115.54950 * 32.77280 * 12 11 10 36 36 H 1.08996 * 117.49644 * 359.97438 * 13 12 11 37 37 H 1.08998 * 117.49757 * 145.02121 * 13 12 11 38 38 H 1.08997 * 117.49941 * 214.97774 * 14 12 11 39 39 H 1.09000 * 117.49575 * 0.02562 * 14 12 11 40 40 H 1.08002 * 120.12472 * 359.97438 * 18 17 15 41 41 H 1.08005 * 119.88457 * 179.72123 * 26 19 18 42 42 H 1.08006 * 119.87994 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 2.9154 -3.9674 -1.2296 12 6 2.1621 -5.0873 -1.9501 13 6 2.8422 -6.4552 -2.0350 14 6 2.7305 -5.5767 -3.2836 15 6 2.4237 -4.3106 1.1321 16 8 3.2993 -5.1533 1.1657 17 6 1.6015 -4.0518 2.3317 18 6 1.1484 -2.7612 2.6042 19 6 0.3750 -2.5260 3.7344 20 6 -0.1107 -1.1545 4.0296 21 7 0.1203 -0.0502 3.3057 22 7 -0.4762 0.9279 3.8983 23 7 -1.0576 0.4829 4.9570 24 1 -1.5728 1.0177 5.5811 25 7 -0.8483 -0.7847 5.0575 26 6 0.0552 -3.5791 4.5917 27 6 0.5039 -4.8556 4.3213 28 6 1.2748 -5.1003 3.1982 29 9 1.7110 -6.3521 2.9380 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.9761 -3.0941 -1.8789 34 1 3.9212 -4.3068 -0.9819 35 1 1.0777 -5.0703 -1.8411 36 1 3.8264 -6.5571 -1.5779 37 1 2.2052 -7.3381 -1.9824 38 1 2.0201 -5.8821 -4.0518 39 1 3.6414 -5.1012 -3.6473 40 1 1.3977 -1.9475 1.9392 41 1 -0.5422 -3.3938 5.4721 42 1 0.2534 -5.6667 4.9889 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:22 Heat of formation + Delta-G solvation = 105.380565 kcal Electronic energy + Delta-G solvation = -30708.962769 eV Core-core repulsion = 26414.996463 eV Total energy + Delta-G solvation = -4293.966306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.97736 -45.31057 -41.37141 -39.52756 -38.14398 -36.61577 -35.26111 -34.42779 -34.33402 -32.63714 -31.22053 -29.52481 -28.04960 -25.79551 -25.38556 -25.00356 -24.00605 -23.18775 -23.03329 -21.72499 -20.60228 -19.94489 -18.60656 -18.42016 -18.25314 -17.98932 -17.65227 -17.15306 -16.67864 -16.60198 -16.15154 -15.98895 -15.67953 -15.30110 -14.99966 -14.81585 -14.57927 -14.26699 -14.13147 -13.77174 -13.73330 -13.45548 -13.04503 -12.97353 -12.84725 -12.62279 -12.57553 -12.34341 -12.21234 -12.14122 -11.99475 -11.76667 -11.72688 -11.62728 -11.31040 -10.90632 -10.74369 -10.49891 -9.99187 -9.58894 -9.42163 -8.08146 -6.20495 -0.50206 -0.06081 0.29536 1.23257 1.45726 1.50366 1.53639 1.53863 1.83936 2.17794 2.50627 2.64859 2.74047 2.95071 3.11526 3.25290 3.26841 3.58235 3.80371 3.86679 4.01890 4.09858 4.14448 4.19475 4.31551 4.39303 4.57212 4.66172 4.76397 4.77587 4.83913 4.91722 4.95413 5.00053 5.01798 5.15269 5.27431 5.27921 5.29490 5.37207 5.68840 5.74176 5.75935 5.83505 6.11288 6.56734 6.85165 7.22458 7.29836 7.51095 8.95887 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009080 B = 0.005409 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.955104 B = 5175.611014 C = 7768.873905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.066 3.934 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.561 4.561 8 H 0.047 0.953 9 C 0.229 3.771 10 N -0.585 5.585 11 C 0.153 3.847 12 C -0.184 4.184 13 C -0.172 4.172 14 C -0.151 4.151 15 C 0.551 3.449 16 O -0.578 6.578 17 C -0.194 4.194 18 C -0.037 4.037 19 C -0.053 4.053 20 C 0.205 3.795 21 N -0.266 5.266 22 N -0.072 5.072 23 N -0.203 5.203 24 H 0.492 0.508 25 N -0.282 5.282 26 C -0.015 4.015 27 C -0.153 4.153 28 C 0.153 3.847 29 F -0.130 7.130 30 H 0.265 0.735 31 H 0.011 0.989 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.180 0.820 41 H 0.180 0.820 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -4.762 9.039 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.599 4.599 8 H 0.066 0.934 9 C 0.109 3.891 10 N -0.314 5.314 11 C 0.030 3.970 12 C -0.204 4.204 13 C -0.209 4.209 14 C -0.188 4.188 15 C 0.340 3.660 16 O -0.460 6.460 17 C -0.198 4.198 18 C -0.057 4.057 19 C -0.057 4.057 20 C -0.075 4.075 21 N -0.138 5.138 22 N -0.067 5.067 23 N -0.053 5.053 24 H 0.351 0.649 25 N -0.136 5.136 26 C -0.035 4.035 27 C -0.171 4.171 28 C 0.132 3.868 29 F -0.108 7.108 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.197 0.803 41 H 0.197 0.803 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.421 -4.409 8.878 10.854 hybrid contribution 0.246 0.933 0.008 0.965 sum -4.175 -3.476 8.886 10.416 Atomic orbital electron populations 1.69902 1.06482 1.27673 1.47249 1.25113 0.95139 1.00394 0.93315 0.86002 0.78835 0.81010 0.78086 1.20349 1.20743 1.20563 1.21270 0.92941 0.91023 1.54645 0.93439 1.19938 0.88009 0.82633 0.98471 1.48065 1.42587 1.31919 1.08784 1.20903 0.94471 0.96944 0.84686 1.22599 0.99045 0.96474 1.02256 1.22977 1.01922 0.93758 1.02220 1.23023 1.03322 1.02233 0.90268 1.18285 0.83229 0.80887 0.83552 1.90674 1.34137 1.36403 1.84813 1.19934 1.06516 0.94667 0.98638 1.22589 0.90895 0.97412 0.94845 1.17326 1.03078 0.87857 0.97405 1.23589 0.98178 0.95786 0.89917 1.76486 1.17886 0.96575 1.22825 1.78958 1.07771 1.22713 0.97257 1.47773 1.34416 1.04558 1.18539 0.64869 1.74724 1.19312 0.96502 1.23070 1.21459 0.94771 0.89413 0.97813 1.21284 0.99803 0.99454 0.96570 1.18109 0.95502 0.78354 0.94843 1.91520 1.87529 1.37957 1.93840 0.92605 0.97098 0.92215 0.89889 0.91574 0.89128 0.89533 0.88442 0.87048 0.87764 0.80292 0.80287 0.79382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.28 13.29 21.44 0.28 -45.99 16 2 C 0.07 3.41 5.46 84.65 0.46 3.87 16 3 Si 0.93 43.00 29.54 68.60 2.03 45.02 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.56 -29.03 7.55 25.60 0.19 -28.84 16 8 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 9 C 0.23 11.11 4.66 85.64 0.40 11.50 16 10 N -0.59 -26.20 2.50 -829.71 -2.08 -28.28 16 11 C 0.15 6.05 5.63 86.38 0.49 6.54 16 12 C -0.18 -6.29 5.98 -10.79 -0.06 -6.35 16 13 C -0.17 -5.12 10.18 30.62 0.31 -4.81 16 14 C -0.15 -3.95 10.25 30.62 0.31 -3.63 16 15 C 0.55 25.02 7.28 86.75 0.63 25.65 16 16 O -0.58 -27.94 15.66 -3.94 -0.06 -28.00 16 17 C -0.19 -7.83 5.51 -20.08 -0.11 -7.94 16 18 C -0.04 -1.52 7.06 22.74 0.16 -1.36 16 19 C -0.05 -1.78 5.87 -20.07 -0.12 -1.90 16 20 C 0.21 7.02 7.93 137.38 1.09 8.11 16 21 N -0.27 -10.65 12.22 -52.18 -0.64 -11.28 16 22 N -0.07 -2.36 13.47 37.02 0.50 -1.86 16 23 N -0.20 -4.56 7.90 37.02 0.29 -4.27 16 24 H 0.49 5.28 8.96 -347.54 -3.12 2.16 16 25 N -0.28 -7.39 12.07 -52.12 -0.63 -8.02 16 26 C -0.01 -0.36 9.69 22.51 0.22 -0.14 16 27 C -0.15 -3.66 10.00 22.25 0.22 -3.44 16 28 C 0.15 5.17 7.24 22.71 0.16 5.33 16 29 F -0.13 -4.68 16.07 44.97 0.72 -3.95 16 30 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 2.97 3.81 -2.61 -0.01 2.96 16 33 H 0.08 3.30 7.92 -2.39 -0.02 3.28 16 34 H 0.07 2.66 7.23 -2.39 -0.02 2.64 16 35 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 36 H 0.09 2.73 8.04 -2.39 -0.02 2.72 16 37 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.18 8.53 3.73 -2.91 -0.01 8.52 16 41 H 0.18 2.99 7.87 -2.91 -0.02 2.97 16 42 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -68.24 366.77 2.77 -65.47 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -2.01 Total: 18.58 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 4.36 Total: 2.59 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -2.27 Total: -99.70 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.06 Total: -28.00 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.72 Total: -3.95 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.24 2.77 -65.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.849 kcal (2) G-P(sol) polarization free energy of solvation -68.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds