Wall clock time and date at job start Wed Apr 1 2020 03:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47293 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47192 * 120.00035 * 3 2 1 6 6 H 1.48501 * 109.47202 * 239.99959 * 3 2 1 7 7 C 1.37875 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 173.62326 * 7 2 1 9 9 C 1.50701 * 119.99694 * 353.62548 * 7 2 1 10 10 H 1.08999 * 109.47244 * 328.93324 * 9 7 2 11 11 C 1.50693 * 109.47112 * 208.92798 * 9 7 2 12 12 O 1.21287 * 120.00238 * 239.99811 * 11 9 7 13 13 N 1.34779 * 120.00052 * 60.00634 * 11 9 7 14 14 C 1.48090 * 127.84698 * 359.66849 * 13 11 9 15 15 C 1.54622 * 104.59300 * 140.12249 * 14 13 11 16 16 H 1.09002 * 113.09049 * 147.49535 * 15 14 13 17 17 C 1.54385 * 108.93914 * 273.64748 * 15 14 13 18 18 O 1.44384 * 104.92021 * 87.02547 * 17 15 14 19 19 C 1.44382 * 105.25166 * 40.76800 * 18 17 15 20 20 C 1.54385 * 104.93043 * 319.24955 * 19 18 17 21 21 C 1.50696 * 112.71036 * 147.23675 * 20 19 18 22 22 O 1.20830 * 119.99919 * 242.56417 * 21 20 19 23 23 O 1.34231 * 120.00350 * 62.56028 * 21 20 19 24 24 C 1.48088 * 127.84838 * 180.02562 * 13 11 9 25 25 C 1.50704 * 109.47073 * 88.93030 * 9 7 2 26 26 C 1.38232 * 120.00033 * 53.55600 * 25 9 7 27 27 C 1.38235 * 119.99995 * 179.76921 * 26 25 9 28 28 C 1.38231 * 120.00034 * 0.49845 * 27 26 25 29 29 C 1.38234 * 120.00045 * 359.75597 * 28 27 26 30 30 C 1.38237 * 120.00157 * 359.97438 * 29 28 27 31 31 H 0.96999 * 119.99538 * 174.70396 * 1 2 3 32 32 H 1.08993 * 110.38584 * 258.98734 * 14 13 11 33 33 H 1.09002 * 110.37833 * 21.34446 * 14 13 11 34 34 H 1.09003 * 110.35362 * 328.16663 * 17 15 14 35 35 H 1.09006 * 110.35488 * 205.88829 * 17 15 14 36 36 H 1.09003 * 110.34809 * 200.38406 * 19 18 17 37 37 H 1.09010 * 110.43762 * 78.15874 * 19 18 17 38 38 H 0.96698 * 117.00192 * 179.97438 * 23 21 20 39 39 H 1.09004 * 110.38136 * 338.66635 * 24 13 11 40 40 H 1.08998 * 110.38500 * 101.03493 * 24 13 11 41 41 H 1.08008 * 119.99995 * 359.97438 * 26 25 9 42 42 H 1.07998 * 120.00070 * 180.23066 * 27 26 25 43 43 H 1.08006 * 120.00409 * 179.72426 * 28 27 26 44 44 H 1.08001 * 120.00496 * 179.97438 * 29 28 27 45 45 H 1.07991 * 120.00740 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0796 -1.1968 -0.1033 9 6 1.2581 -2.4950 0.1460 10 1 0.3692 -2.3376 0.7568 11 6 2.1490 -3.5138 0.8087 12 8 2.4252 -4.5445 0.2321 13 7 2.6388 -3.2799 2.0424 14 6 2.4215 -2.0891 2.8955 15 6 2.2510 -2.6583 4.3230 16 1 2.6314 -1.9920 5.0972 17 6 0.7698 -3.0372 4.5377 18 8 0.6561 -4.3884 4.0418 19 6 1.8534 -5.0595 4.4899 20 6 2.9853 -4.0286 4.2911 21 6 4.0718 -4.1503 5.3282 22 8 4.2929 -3.2323 6.0821 23 8 4.7939 -5.2785 5.4146 24 6 3.5223 -4.1520 2.8497 25 6 0.8498 -2.9949 -1.2158 26 6 1.7976 -3.1403 -2.2115 27 6 1.4239 -3.6033 -3.4592 28 6 0.1007 -3.9112 -3.7143 29 6 -0.8480 -3.7609 -2.7203 30 6 -0.4734 -3.3031 -1.4708 31 1 -0.4849 -0.8365 -0.0775 32 1 3.2856 -1.4264 2.8496 33 1 1.5198 -1.5603 2.5866 34 1 0.1216 -2.3694 3.9703 35 1 0.5188 -3.0001 5.5978 36 1 2.0389 -5.9475 3.8855 37 1 1.7671 -5.3295 5.5425 38 1 5.4800 -5.3096 6.0953 39 1 3.4537 -5.1842 2.5061 40 1 4.5530 -3.8012 2.7972 41 1 2.8308 -2.8952 -2.0136 42 1 2.1650 -3.7204 -4.2360 43 1 -0.1921 -4.2688 -4.6905 44 1 -1.8819 -4.0010 -2.9196 45 1 -1.2146 -3.1852 -0.6943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:57 Heat of formation + Delta-G solvation = -133.251729 kcal Electronic energy + Delta-G solvation = -31795.592784 eV Core-core repulsion = 27550.153408 eV Total energy + Delta-G solvation = -4245.439376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45310 -39.70231 -38.88803 -37.64661 -36.40408 -35.60476 -34.04730 -31.72952 -30.89022 -30.80918 -30.04017 -27.58853 -25.94768 -25.26047 -24.18020 -23.53544 -21.88487 -21.63354 -20.74158 -19.76918 -18.89795 -18.28312 -17.62792 -17.12168 -16.33901 -16.16259 -15.88147 -15.57444 -15.20954 -14.89688 -14.66649 -14.46917 -13.99382 -13.89244 -13.80153 -13.45090 -13.31425 -12.95100 -12.51682 -12.48961 -12.34059 -12.19577 -12.05216 -11.81560 -11.65452 -11.43603 -11.40656 -11.11395 -10.93113 -10.86267 -10.83141 -10.64972 -10.31721 -10.23503 -10.15492 -9.86568 -9.03074 -8.88145 -8.65268 -8.18494 -8.03911 -7.67798 -6.58536 -4.34970 1.86633 2.26572 2.31051 2.61737 3.31214 3.33951 3.50069 3.52462 3.61013 3.87583 3.93719 4.35319 4.42617 4.61174 4.73265 4.92420 4.97507 5.01160 5.13061 5.34540 5.46271 5.51838 5.59887 5.63722 5.65061 5.68968 5.74097 5.80643 5.82239 5.95061 6.06147 6.15351 6.18262 6.27401 6.38135 6.45602 6.61361 6.67514 6.73415 6.88719 6.96185 7.27834 7.34015 7.55909 7.59750 7.80254 7.92078 8.16156 8.18684 8.57690 9.02374 9.35396 10.78588 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.004420 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.451646 B = 6333.037565 C = 7531.143749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.034 3.966 3 Si 1.062 2.938 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.589 4.589 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.067 0.933 11 C 0.562 3.438 12 O -0.560 6.560 13 N -0.609 5.609 14 C 0.125 3.875 15 C -0.126 4.126 16 H 0.121 0.879 17 C 0.051 3.949 18 O -0.354 6.354 19 C 0.071 3.929 20 C -0.109 4.109 21 C 0.509 3.491 22 O -0.505 6.505 23 O -0.509 6.509 24 C 0.129 3.871 25 C -0.021 4.021 26 C -0.079 4.079 27 C -0.132 4.132 28 C -0.145 4.145 29 C -0.128 4.128 30 C -0.126 4.126 31 H 0.274 0.726 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.412 0.588 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.441 -6.865 9.294 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.889 3.111 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.627 4.627 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.085 0.915 11 C 0.355 3.645 12 O -0.438 6.438 13 N -0.343 5.343 14 C 0.001 3.999 15 C -0.146 4.146 16 H 0.139 0.861 17 C -0.026 4.026 18 O -0.272 6.272 19 C -0.007 4.007 20 C -0.111 4.111 21 C 0.350 3.650 22 O -0.392 6.392 23 O -0.321 6.321 24 C 0.004 3.996 25 C -0.022 4.022 26 C -0.097 4.097 27 C -0.151 4.151 28 C -0.164 4.164 29 C -0.146 4.146 30 C -0.144 4.144 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.079 0.921 38 H 0.271 0.729 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.882 -5.609 8.686 11.044 hybrid contribution 0.995 -1.482 0.549 1.867 sum 4.877 -7.091 9.234 12.623 Atomic orbital electron populations 1.70786 1.06833 1.31327 1.43688 1.25786 0.96308 1.02307 0.92921 0.83629 0.75115 0.75417 0.76904 1.20577 1.21065 1.21274 1.21529 0.94578 0.89454 1.57090 0.92552 1.18104 0.95747 0.93256 0.89929 0.91533 1.21084 0.78918 0.86702 0.77845 1.90605 1.61317 1.28823 1.63080 1.48608 1.49894 1.19556 1.16224 1.22379 1.04188 0.88037 0.85261 1.23779 0.95449 0.94497 1.00826 0.86067 1.23566 0.95251 0.84488 0.99294 1.89228 1.38872 1.22983 1.76106 1.23294 0.82641 0.94741 0.99977 1.22720 0.93975 0.99628 0.94820 1.22506 0.80620 0.79270 0.82622 1.90722 1.66801 1.39745 1.41960 1.84551 1.48639 1.40291 1.58575 1.21969 0.93960 0.97926 0.85705 1.20106 0.92514 0.92645 0.96975 1.20788 0.99369 0.97263 0.92266 1.20979 0.95799 1.01276 0.97006 1.20827 0.93623 1.03398 0.98518 1.20888 0.98455 1.01422 0.93877 1.20969 0.96056 1.00579 0.96793 0.91410 0.90793 0.87701 0.87697 0.92025 0.87771 0.92058 0.72941 0.88916 0.91399 0.87054 0.87420 0.87506 0.87366 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.56 55.43 0.75 -23.05 16 2 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16 3 Si 1.06 22.73 29.91 -169.99 -5.08 17.64 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.59 -14.36 6.06 -34.44 -0.21 -14.57 16 8 H 0.06 1.42 7.82 -52.49 -0.41 1.01 16 9 C 0.05 1.18 1.28 -94.08 -0.12 1.06 16 10 H 0.07 1.61 6.50 -51.93 -0.34 1.28 16 11 C 0.56 12.52 7.16 -10.99 -0.08 12.44 16 12 O -0.56 -13.71 15.70 5.55 0.09 -13.62 16 13 N -0.61 -11.27 3.14 -169.31 -0.53 -11.80 16 14 C 0.12 2.06 5.49 -2.32 -0.01 2.05 16 15 C -0.13 -1.69 3.78 -87.71 -0.33 -2.03 16 16 H 0.12 1.53 7.02 -51.93 -0.36 1.16 16 17 C 0.05 0.67 7.05 37.88 0.27 0.94 16 18 O -0.35 -5.42 11.49 -35.23 -0.40 -5.82 16 19 C 0.07 0.89 6.62 37.88 0.25 1.14 16 20 C -0.11 -1.40 1.04 -152.92 -0.16 -1.56 16 21 C 0.51 5.88 7.11 36.00 0.26 6.13 16 22 O -0.51 -6.93 16.45 -18.75 -0.31 -7.24 16 23 O -0.51 -4.36 13.42 -39.26 -0.53 -4.89 16 24 C 0.13 1.95 6.03 -2.48 -0.01 1.93 16 25 C -0.02 -0.50 4.13 -104.62 -0.43 -0.93 16 26 C -0.08 -1.78 8.33 -39.58 -0.33 -2.11 16 27 C -0.13 -2.63 10.05 -39.59 -0.40 -3.03 16 28 C -0.15 -2.71 10.05 -39.59 -0.40 -3.11 16 29 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 30 C -0.13 -2.72 9.40 -39.58 -0.37 -3.09 16 31 H 0.27 7.32 6.47 -40.82 -0.26 7.05 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.10 1.93 6.27 -51.93 -0.33 1.61 16 34 H 0.10 1.44 7.52 -51.93 -0.39 1.04 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.27 7.51 -51.93 -0.39 0.88 16 37 H 0.06 0.64 7.99 -51.92 -0.41 0.23 16 38 H 0.41 1.63 9.10 45.56 0.41 2.04 16 39 H 0.09 1.44 7.24 -51.93 -0.38 1.06 16 40 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 41 H 0.11 2.58 7.88 -52.48 -0.41 2.16 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 43 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.11 2.25 7.96 -52.49 -0.42 1.83 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -31.82 371.76 -8.00 -39.82 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.01 Total: 10.21 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.58 Total: -6.85 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.22 Total: -34.86 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.15 Total: -31.57 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.08 Total: 17.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.82 -8.00 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.432 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds