Wall clock time and date at job start Wed Apr 1 2020 03:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99670 * 2 1 4 4 H 1.48500 * 109.47293 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47192 * 120.00035 * 3 2 1 6 6 H 1.48501 * 109.47202 * 239.99959 * 3 2 1 7 7 C 1.37875 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 173.62326 * 7 2 1 9 9 C 1.50701 * 119.99694 * 353.62548 * 7 2 1 10 10 H 1.08999 * 109.47244 * 328.93324 * 9 7 2 11 11 C 1.50693 * 109.47112 * 208.92798 * 9 7 2 12 12 O 1.21287 * 120.00238 * 239.99811 * 11 9 7 13 13 N 1.34779 * 120.00052 * 60.00634 * 11 9 7 14 14 C 1.48090 * 127.84698 * 359.66849 * 13 11 9 15 15 C 1.54622 * 104.59300 * 140.12249 * 14 13 11 16 16 H 1.09002 * 113.09049 * 147.49535 * 15 14 13 17 17 C 1.54385 * 108.93914 * 273.64748 * 15 14 13 18 18 O 1.44384 * 104.92021 * 87.02547 * 17 15 14 19 19 C 1.44382 * 105.25166 * 40.76800 * 18 17 15 20 20 C 1.54385 * 104.93043 * 319.24955 * 19 18 17 21 21 C 1.50696 * 112.71036 * 147.23675 * 20 19 18 22 22 O 1.20830 * 119.99919 * 242.56417 * 21 20 19 23 23 O 1.34231 * 120.00350 * 62.56028 * 21 20 19 24 24 C 1.48088 * 127.84838 * 180.02562 * 13 11 9 25 25 C 1.50704 * 109.47073 * 88.93030 * 9 7 2 26 26 C 1.38232 * 120.00033 * 53.55600 * 25 9 7 27 27 C 1.38235 * 119.99995 * 179.76921 * 26 25 9 28 28 C 1.38231 * 120.00034 * 0.49845 * 27 26 25 29 29 C 1.38234 * 120.00045 * 359.75597 * 28 27 26 30 30 C 1.38237 * 120.00157 * 359.97438 * 29 28 27 31 31 H 0.96999 * 119.99538 * 174.70396 * 1 2 3 32 32 H 1.08993 * 110.38584 * 258.98734 * 14 13 11 33 33 H 1.09002 * 110.37833 * 21.34446 * 14 13 11 34 34 H 1.09003 * 110.35362 * 328.16663 * 17 15 14 35 35 H 1.09006 * 110.35488 * 205.88829 * 17 15 14 36 36 H 1.09003 * 110.34809 * 200.38406 * 19 18 17 37 37 H 1.09010 * 110.43762 * 78.15874 * 19 18 17 38 38 H 0.96698 * 117.00192 * 179.97438 * 23 21 20 39 39 H 1.09004 * 110.38136 * 338.66635 * 24 13 11 40 40 H 1.08998 * 110.38500 * 101.03493 * 24 13 11 41 41 H 1.08008 * 119.99995 * 359.97438 * 26 25 9 42 42 H 1.07998 * 120.00070 * 180.23066 * 27 26 25 43 43 H 1.08006 * 120.00409 * 179.72426 * 28 27 26 44 44 H 1.08001 * 120.00496 * 179.97438 * 29 28 27 45 45 H 1.07991 * 120.00740 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0796 -1.1968 -0.1033 9 6 1.2581 -2.4950 0.1460 10 1 0.3692 -2.3376 0.7568 11 6 2.1490 -3.5138 0.8087 12 8 2.4252 -4.5445 0.2321 13 7 2.6388 -3.2799 2.0424 14 6 2.4215 -2.0891 2.8955 15 6 2.2510 -2.6583 4.3230 16 1 2.6314 -1.9920 5.0972 17 6 0.7698 -3.0372 4.5377 18 8 0.6561 -4.3884 4.0418 19 6 1.8534 -5.0595 4.4899 20 6 2.9853 -4.0286 4.2911 21 6 4.0718 -4.1503 5.3282 22 8 4.2929 -3.2323 6.0821 23 8 4.7939 -5.2785 5.4146 24 6 3.5223 -4.1520 2.8497 25 6 0.8498 -2.9949 -1.2158 26 6 1.7976 -3.1403 -2.2115 27 6 1.4239 -3.6033 -3.4592 28 6 0.1007 -3.9112 -3.7143 29 6 -0.8480 -3.7609 -2.7203 30 6 -0.4734 -3.3031 -1.4708 31 1 -0.4849 -0.8365 -0.0775 32 1 3.2856 -1.4264 2.8496 33 1 1.5198 -1.5603 2.5866 34 1 0.1216 -2.3694 3.9703 35 1 0.5188 -3.0001 5.5978 36 1 2.0389 -5.9475 3.8855 37 1 1.7671 -5.3295 5.5425 38 1 5.4800 -5.3096 6.0953 39 1 3.4537 -5.1842 2.5061 40 1 4.5530 -3.8012 2.7972 41 1 2.8308 -2.8952 -2.0136 42 1 2.1650 -3.7204 -4.2360 43 1 -0.1921 -4.2688 -4.6905 44 1 -1.8819 -4.0010 -2.9196 45 1 -1.2146 -3.1852 -0.6943 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606086.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:56 Heat of formation + Delta-G solvation = -153.752758 kcal Electronic energy + Delta-G solvation = -31796.481775 eV Core-core repulsion = 27550.153408 eV Total energy + Delta-G solvation = -4246.328367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.56468 -40.95598 -40.28006 -39.21720 -37.25520 -36.97937 -35.88978 -33.07680 -32.56765 -32.03533 -31.64932 -29.22896 -27.16071 -26.74375 -25.46045 -25.05600 -23.29425 -22.99064 -22.31767 -20.89180 -20.45448 -19.29200 -19.07626 -18.36605 -17.89324 -17.59257 -17.09351 -16.87127 -16.52556 -16.18636 -16.06180 -15.68114 -15.64498 -15.48551 -15.30134 -14.76389 -14.63341 -14.30986 -14.07892 -13.96782 -13.86456 -13.82292 -13.33579 -13.22642 -12.89449 -12.70828 -12.61585 -12.59084 -12.44986 -12.25650 -11.98883 -11.95975 -11.91393 -11.79340 -11.66062 -10.97832 -10.90371 -10.66764 -10.54784 -9.69781 -9.65851 -9.34973 -8.59586 -6.35206 0.64235 0.69289 0.93987 1.56564 1.61253 1.69833 1.78784 1.81301 2.17294 2.57039 2.77718 2.87020 3.07674 3.20536 3.25357 3.57100 3.81662 3.88472 4.03643 4.08664 4.12826 4.20904 4.32564 4.38152 4.38627 4.42158 4.47666 4.53017 4.55397 4.58849 4.68191 4.71188 4.79824 4.84048 4.90108 4.90667 5.21390 5.30727 5.35925 5.45365 5.65451 5.68401 5.72014 5.73756 6.04509 6.15661 6.29977 6.48602 6.61649 6.87379 7.29958 7.41293 8.77634 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011281 B = 0.004420 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.451646 B = 6333.037565 C = 7531.143749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.002 4.002 3 Si 1.099 2.901 4 H -0.285 1.285 5 H -0.261 1.261 6 H -0.283 1.283 7 C -0.580 4.580 8 H 0.043 0.957 9 C 0.055 3.945 10 H 0.046 0.954 11 C 0.557 3.443 12 O -0.590 6.590 13 N -0.610 5.610 14 C 0.122 3.878 15 C -0.115 4.115 16 H 0.138 0.862 17 C 0.050 3.950 18 O -0.384 6.384 19 C 0.069 3.931 20 C -0.101 4.101 21 C 0.523 3.477 22 O -0.525 6.525 23 O -0.499 6.499 24 C 0.125 3.875 25 C -0.049 4.049 26 C -0.107 4.107 27 C -0.133 4.133 28 C -0.140 4.140 29 C -0.126 4.126 30 C -0.149 4.149 31 H 0.264 0.736 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.435 0.565 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.216 -7.573 9.850 13.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.204 4.204 3 Si 0.922 3.078 4 H -0.211 1.211 5 H -0.185 1.185 6 H -0.209 1.209 7 C -0.617 4.617 8 H 0.062 0.938 9 C 0.034 3.966 10 H 0.064 0.936 11 C 0.349 3.651 12 O -0.471 6.471 13 N -0.342 5.342 14 C -0.001 4.001 15 C -0.134 4.134 16 H 0.156 0.844 17 C -0.026 4.026 18 O -0.303 6.303 19 C -0.008 4.008 20 C -0.103 4.103 21 C 0.365 3.635 22 O -0.414 6.414 23 O -0.313 6.313 24 C 0.002 3.998 25 C -0.050 4.050 26 C -0.125 4.125 27 C -0.151 4.151 28 C -0.158 4.158 29 C -0.144 4.144 30 C -0.167 4.167 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.298 0.702 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.697 -6.338 9.298 12.194 hybrid contribution 0.782 -1.373 0.353 1.619 sum 5.479 -7.712 9.651 13.514 Atomic orbital electron populations 1.70871 1.07654 1.30728 1.46012 1.26857 0.96287 1.05035 0.92250 0.83149 0.74436 0.72222 0.77975 1.21094 1.18534 1.20877 1.21517 0.93782 0.90242 1.56198 0.93846 1.17975 0.95019 0.93342 0.90313 0.93624 1.20836 0.79131 0.86146 0.78972 1.90561 1.62592 1.29681 1.64256 1.48549 1.49388 1.20750 1.15505 1.22427 1.03069 0.87570 0.86988 1.23679 0.96029 0.95007 0.98675 0.84442 1.23636 0.94727 0.83577 1.00681 1.89201 1.40211 1.23927 1.76960 1.23451 0.81451 0.94273 1.01586 1.22558 0.94711 0.99287 0.93745 1.21965 0.80226 0.79595 0.81731 1.90731 1.67336 1.40625 1.42697 1.84493 1.48935 1.38488 1.59429 1.22147 0.93926 0.97045 0.86698 1.20199 0.93615 0.94236 0.96943 1.20808 0.98442 0.99410 0.93845 1.21353 0.97440 0.99915 0.96388 1.21316 0.92665 1.01715 1.00059 1.21317 1.00506 0.99785 0.92787 1.21141 0.95458 1.01802 0.98305 0.92542 0.90556 0.90212 0.89157 0.89029 0.87773 0.89224 0.70181 0.89355 0.90254 0.88918 0.84465 0.83197 0.83972 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.80 13.56 21.45 0.29 -50.51 16 2 C 0.00 -0.12 5.45 84.65 0.46 0.34 16 3 Si 1.10 46.32 29.91 68.60 2.05 48.37 16 4 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.58 -29.55 6.06 25.60 0.16 -29.40 16 8 H 0.04 2.28 7.82 -2.91 -0.02 2.25 16 9 C 0.05 2.70 1.28 -13.03 -0.02 2.68 16 10 H 0.05 2.40 6.50 -2.39 -0.02 2.39 16 11 C 0.56 26.08 7.16 87.65 0.63 26.71 16 12 O -0.59 -30.15 15.70 -3.05 -0.05 -30.20 16 13 N -0.61 -23.31 3.14 -807.95 -2.54 -25.85 16 14 C 0.12 4.15 5.49 86.63 0.48 4.63 16 15 C -0.11 -2.99 3.78 -8.91 -0.03 -3.02 16 16 H 0.14 3.20 7.02 -2.39 -0.02 3.19 16 17 C 0.05 1.30 7.05 72.45 0.51 1.81 16 18 O -0.38 -11.70 11.49 -148.98 -1.71 -13.41 16 19 C 0.07 1.63 6.62 72.45 0.48 2.11 16 20 C -0.10 -2.43 1.04 -51.15 -0.05 -2.49 16 21 C 0.52 10.69 7.11 71.23 0.51 11.19 16 22 O -0.52 -12.95 16.45 21.95 0.36 -12.59 16 23 O -0.50 -6.94 13.42 -51.43 -0.69 -7.63 16 24 C 0.12 3.75 6.03 86.52 0.52 4.27 16 25 C -0.05 -2.38 4.13 -19.86 -0.08 -2.47 16 26 C -0.11 -4.98 8.33 22.27 0.19 -4.79 16 27 C -0.13 -5.14 10.05 22.27 0.22 -4.92 16 28 C -0.14 -4.85 10.05 22.27 0.22 -4.63 16 29 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 30 C -0.15 -6.62 9.40 22.27 0.21 -6.42 16 31 H 0.26 14.86 6.47 -92.71 -0.60 14.26 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.08 3.12 6.27 -2.39 -0.01 3.11 16 34 H 0.09 2.59 7.52 -2.39 -0.02 2.57 16 35 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.10 2.44 7.51 -2.39 -0.02 2.42 16 37 H 0.09 1.62 7.99 -2.38 -0.02 1.60 16 38 H 0.44 1.84 9.10 -74.06 -0.67 1.17 16 39 H 0.09 2.74 7.24 -2.39 -0.02 2.72 16 40 H 0.08 2.20 7.99 -2.39 -0.02 2.18 16 41 H 0.09 4.53 7.88 -2.91 -0.02 4.50 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 44 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 45 H 0.11 4.62 7.96 -2.92 -0.02 4.60 16 Total: -1.00 -71.48 371.76 2.86 -68.62 By element: Atomic # 1 Polarization: 31.52 SS G_CDS: 0.53 Total: 32.05 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 4.62 Total: -8.85 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -2.25 Total: -76.36 kcal Atomic # 8 Polarization: -61.75 SS G_CDS: -2.09 Total: -63.83 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.05 Total: 48.37 kcal Total: -71.48 2.86 -68.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606086.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.134 kcal (2) G-P(sol) polarization free energy of solvation -71.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds