Wall clock time and date at job start Wed Apr 1 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47053 * 2 1 4 4 O 1.34447 * 124.91804 * 269.97851 * 3 2 1 5 5 C 1.34815 * 110.88510 * 180.02562 * 4 3 2 6 6 C 1.38946 * 133.49036 * 180.02562 * 5 4 3 7 7 C 1.37848 * 119.81678 * 179.97438 * 6 5 4 8 8 C 1.38744 * 120.68174 * 359.97438 * 7 6 5 9 9 C 1.36746 * 120.42022 * 0.02562 * 8 7 6 10 10 C 1.39409 * 119.71420 * 359.68164 * 9 8 7 11 11 C 1.33989 * 124.92593 * 89.99926 * 3 2 1 12 12 C 1.50701 * 126.90497 * 359.95701 * 11 3 2 13 13 C 1.50702 * 109.47206 * 90.00314 * 12 11 3 14 14 O 1.21294 * 119.99885 * 5.21967 * 13 12 11 15 15 N 1.34776 * 120.00238 * 185.22572 * 13 12 11 16 16 C 1.37095 * 120.00030 * 355.29383 * 15 13 12 17 17 H 1.08003 * 119.99788 * 318.73287 * 16 15 13 18 18 C 1.38951 * 119.99999 * 138.72602 * 16 15 13 19 19 N 1.31416 * 120.00115 * 352.50651 * 18 16 15 20 20 Si 1.86799 * 119.99977 * 172.50098 * 18 16 15 21 21 H 1.48501 * 109.46950 * 90.00468 * 20 18 16 22 22 H 1.48506 * 109.47187 * 210.00142 * 20 18 16 23 23 H 1.48495 * 109.46996 * 330.00164 * 20 18 16 24 24 C 1.46507 * 119.99955 * 175.57359 * 15 13 12 25 25 C 1.53002 * 109.46954 * 89.99621 * 24 15 13 26 26 C 1.50696 * 109.47042 * 179.97438 * 25 24 15 27 27 O 1.20828 * 120.00052 * 0.02562 * 26 25 24 28 28 O 1.34231 * 120.00354 * 180.02562 * 26 25 24 29 29 H 1.09005 * 109.47147 * 299.99856 * 1 2 3 30 30 H 1.08997 * 109.47180 * 60.00177 * 1 2 3 31 31 H 1.09004 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47360 * 239.99798 * 2 1 3 33 33 H 1.09000 * 109.47660 * 119.99990 * 2 1 3 34 34 H 1.07997 * 120.09231 * 359.96175 * 6 5 4 35 35 H 1.07992 * 119.65737 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.78843 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.13622 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.47381 * 330.00255 * 12 11 3 39 39 H 1.08998 * 109.47508 * 209.99945 * 12 11 3 40 40 H 0.96996 * 119.99708 * 185.00413 * 19 18 16 41 41 H 1.08996 * 109.47002 * 209.99355 * 24 15 13 42 42 H 1.09001 * 109.46839 * 330.00052 * 24 15 13 43 43 H 1.09003 * 109.47382 * 299.99892 * 25 24 15 44 44 H 1.09001 * 109.46554 * 59.99894 * 25 24 15 45 45 H 0.96696 * 117.00441 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2892 2.1463 -1.1024 5 6 2.7256 3.3793 -0.7755 6 6 3.1163 4.4844 -1.5216 7 6 3.5231 5.6350 -0.8807 8 6 3.5465 5.7031 0.5049 9 6 3.1659 4.6268 1.2576 10 6 2.7457 3.4566 0.6270 11 6 2.2880 2.1441 1.0986 12 6 2.1305 1.7014 2.5304 13 6 3.4173 1.0795 3.0084 14 8 4.3972 1.0881 2.2936 15 7 3.4792 0.5135 4.2300 16 6 2.4026 0.5881 5.0755 17 1 1.8420 1.5077 5.1561 18 6 2.0325 -0.5195 5.8285 19 7 2.6180 -1.6782 5.6244 20 14 0.7030 -0.3614 7.1311 21 1 -0.6220 -0.6430 6.5226 22 1 0.9624 -1.3331 8.2237 23 1 0.7117 1.0174 7.6824 24 6 4.6994 -0.1761 4.6568 25 6 5.6310 0.8190 5.3517 26 6 6.8858 0.1096 5.7913 27 8 7.0213 -1.0707 5.5709 28 8 7.8530 0.7888 6.4277 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.1016 4.4419 -2.6006 35 1 3.8267 6.4923 -1.4631 36 1 3.8674 6.6120 0.9920 37 1 3.1863 4.6847 2.3358 38 1 1.3259 0.9690 2.5980 39 1 1.8904 2.5633 3.1530 40 1 2.3105 -2.4669 6.0979 41 1 4.4408 -0.9766 5.3499 42 1 5.2021 -0.5973 3.7862 43 1 5.8897 1.6196 4.6587 44 1 5.1282 1.2403 6.2223 45 1 8.6394 0.2910 6.6898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597807832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:21 Heat of formation + Delta-G solvation = -107.337912 kcal Electronic energy + Delta-G solvation = -30519.574310 eV Core-core repulsion = 26275.258642 eV Total energy + Delta-G solvation = -4244.315668 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.18032 -39.79169 -38.55918 -37.68603 -35.79806 -35.10094 -34.31614 -32.44534 -31.92619 -30.81180 -30.25795 -29.03254 -27.15746 -25.25872 -24.06662 -23.54159 -22.53538 -21.15426 -20.63877 -19.74863 -19.06069 -17.75277 -17.02840 -16.81419 -16.39009 -16.15423 -15.88128 -15.74279 -15.36668 -15.27695 -14.58274 -14.30949 -14.08556 -13.93644 -13.82996 -13.56950 -13.06240 -12.80740 -12.71374 -12.47842 -12.40539 -12.03485 -11.99556 -11.87058 -11.63908 -11.46497 -11.24020 -11.15593 -11.11613 -10.95238 -10.91563 -10.83123 -10.45545 -10.42609 -10.09151 -10.04245 -9.60086 -9.20624 -8.56289 -8.36369 -7.67146 -7.58082 -6.39894 -4.26317 1.17071 1.59323 2.66582 2.70488 2.99483 3.05261 3.15466 3.17047 3.45410 3.82512 3.95189 4.05874 4.65489 4.79683 4.91062 4.95224 5.07790 5.23032 5.26912 5.34595 5.40808 5.45628 5.63377 5.64734 5.74201 5.82096 5.85097 5.95843 6.00716 6.03499 6.14293 6.26271 6.29655 6.30940 6.34068 6.39893 6.53533 6.53879 6.67754 6.78565 6.85643 6.92387 6.96966 7.25288 7.51949 7.53835 7.87467 8.29313 8.34400 8.98902 9.40757 9.84308 10.58157 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.003928 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.034517 B = 7126.207684 C = 8659.696798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.036 3.964 4 O -0.195 6.195 5 C 0.048 3.952 6 C -0.111 4.111 7 C -0.104 4.104 8 C -0.142 4.142 9 C -0.065 4.065 10 C -0.106 4.106 11 C -0.134 4.134 12 C -0.052 4.052 13 C 0.478 3.522 14 O -0.592 6.592 15 N -0.442 5.442 16 C -0.342 4.342 17 H 0.089 0.911 18 C 0.046 3.954 19 N -0.863 5.863 20 Si 0.917 3.083 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.268 1.268 24 C 0.120 3.880 25 C -0.123 4.123 26 C 0.483 3.517 27 O -0.514 6.514 28 O -0.526 6.526 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.273 0.727 41 H 0.129 0.871 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 8.603 -5.689 10.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.011 4.011 4 O -0.097 6.097 5 C 0.001 3.999 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.161 4.161 9 C -0.083 4.083 10 C -0.107 4.107 11 C -0.136 4.136 12 C -0.092 4.092 13 C 0.267 3.733 14 O -0.477 6.477 15 N -0.161 5.161 16 C -0.470 4.470 17 H 0.107 0.893 18 C -0.160 4.160 19 N -0.499 5.499 20 Si 0.743 3.257 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.004 4.004 25 C -0.162 4.162 26 C 0.325 3.675 27 O -0.402 6.402 28 O -0.337 6.337 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.079 0.921 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.336 8.189 -6.345 10.445 hybrid contribution -0.002 -0.246 1.090 1.118 sum -1.338 7.943 -5.255 9.617 Atomic orbital electron populations 1.21770 0.93888 1.02364 1.02435 1.20194 0.96243 0.87327 1.04706 1.22006 1.01786 0.94251 0.83070 1.83893 1.69964 1.21722 1.34169 1.19558 1.01211 0.85556 0.93570 1.19831 1.03645 0.90164 0.99288 1.20798 1.00039 0.96740 0.94612 1.20688 1.02819 0.98735 0.93824 1.20301 0.96756 0.91135 1.00070 1.19799 1.03059 0.94994 0.92848 1.20474 1.05427 0.92182 0.95512 1.19796 0.98424 1.01390 0.89552 1.20407 0.89191 0.82192 0.81555 1.90571 1.38040 1.62882 1.56197 1.43364 1.12018 1.49224 1.11470 1.19453 1.08221 0.98280 1.21054 0.89328 1.25515 0.97464 0.94610 0.98394 1.69640 1.39380 0.99307 1.41588 0.86085 0.80756 0.78516 0.80350 1.20051 1.20733 1.19283 1.21412 0.83923 0.94617 1.00463 1.21873 0.90231 1.01222 1.02921 1.23835 0.84403 0.85963 0.73307 1.90697 1.79383 1.17326 1.52752 1.84596 1.30576 1.47461 1.71091 0.91844 0.92626 0.91564 0.90171 0.88045 0.85593 0.85318 0.85776 0.85783 0.88184 0.89295 0.91644 0.85358 0.92126 0.88775 0.87910 0.74229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.89 37.15 0.37 -1.46 16 2 C -0.05 -0.72 6.05 -27.88 -0.17 -0.89 16 3 C 0.04 0.64 6.48 -35.80 -0.23 0.41 16 4 O -0.20 -3.49 10.58 3.90 0.04 -3.45 16 5 C 0.05 0.83 7.42 -38.47 -0.29 0.55 16 6 C -0.11 -1.54 10.07 -39.46 -0.40 -1.94 16 7 C -0.10 -1.27 10.01 -39.54 -0.40 -1.66 16 8 C -0.14 -1.86 9.98 -39.93 -0.40 -2.26 16 9 C -0.06 -1.02 10.05 -39.69 -0.40 -1.42 16 10 C -0.11 -1.92 6.38 -105.16 -0.67 -2.59 16 11 C -0.13 -2.54 4.85 -102.67 -0.50 -3.04 16 12 C -0.05 -1.00 4.54 -29.03 -0.13 -1.13 16 13 C 0.48 11.02 7.61 -10.98 -0.08 10.94 16 14 O -0.59 -15.27 15.67 5.55 0.09 -15.18 16 15 N -0.44 -10.41 2.52 -114.81 -0.29 -10.70 16 16 C -0.34 -7.93 8.48 -14.93 -0.13 -8.05 16 17 H 0.09 1.93 7.32 -52.48 -0.38 1.55 16 18 C 0.05 1.09 5.24 -17.47 -0.09 1.00 16 19 N -0.86 -21.71 10.93 55.50 0.61 -21.10 16 20 Si 0.92 18.21 29.56 -169.99 -5.03 13.18 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 C 0.12 2.83 4.25 -4.04 -0.02 2.81 16 25 C -0.12 -2.46 6.13 -27.88 -0.17 -2.63 16 26 C 0.48 9.04 8.33 36.00 0.30 9.34 16 27 O -0.51 -11.15 16.74 -18.75 -0.31 -11.46 16 28 O -0.53 -7.71 13.42 -39.26 -0.53 -8.23 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.10 1.69 7.68 -51.93 -0.40 1.30 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.86 7.61 -51.93 -0.39 1.46 16 39 H 0.09 1.59 7.85 -51.93 -0.41 1.18 16 40 H 0.27 6.55 8.32 -40.82 -0.34 6.21 16 41 H 0.13 3.30 5.22 -51.93 -0.27 3.03 16 42 H 0.06 1.55 7.44 -51.93 -0.39 1.16 16 43 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 44 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 45 H 0.40 3.92 9.10 45.56 0.41 4.33 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -31.42 388.14 -8.16 -39.58 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.19 Total: 13.55 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -3.40 Total: -2.03 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 0.32 Total: -31.80 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -0.71 Total: -38.33 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.42 -8.16 -39.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597807832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.759 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds