Wall clock time and date at job start Wed Apr 1 2020 03:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47053 * 2 1 4 4 O 1.34447 * 124.91804 * 269.97851 * 3 2 1 5 5 C 1.34815 * 110.88510 * 180.02562 * 4 3 2 6 6 C 1.38946 * 133.49036 * 180.02562 * 5 4 3 7 7 C 1.37848 * 119.81678 * 179.97438 * 6 5 4 8 8 C 1.38744 * 120.68174 * 359.97438 * 7 6 5 9 9 C 1.36746 * 120.42022 * 0.02562 * 8 7 6 10 10 C 1.39409 * 119.71420 * 359.68164 * 9 8 7 11 11 C 1.33989 * 124.92593 * 89.99926 * 3 2 1 12 12 C 1.50701 * 126.90497 * 359.95701 * 11 3 2 13 13 C 1.50702 * 109.47206 * 90.00314 * 12 11 3 14 14 O 1.21294 * 119.99885 * 5.21967 * 13 12 11 15 15 N 1.34776 * 120.00238 * 185.22572 * 13 12 11 16 16 C 1.37095 * 120.00030 * 355.29383 * 15 13 12 17 17 H 1.08003 * 119.99788 * 318.73287 * 16 15 13 18 18 C 1.38951 * 119.99999 * 138.72602 * 16 15 13 19 19 N 1.31416 * 120.00115 * 352.50651 * 18 16 15 20 20 Si 1.86799 * 119.99977 * 172.50098 * 18 16 15 21 21 H 1.48501 * 109.46950 * 90.00468 * 20 18 16 22 22 H 1.48506 * 109.47187 * 210.00142 * 20 18 16 23 23 H 1.48495 * 109.46996 * 330.00164 * 20 18 16 24 24 C 1.46507 * 119.99955 * 175.57359 * 15 13 12 25 25 C 1.53002 * 109.46954 * 89.99621 * 24 15 13 26 26 C 1.50696 * 109.47042 * 179.97438 * 25 24 15 27 27 O 1.20828 * 120.00052 * 0.02562 * 26 25 24 28 28 O 1.34231 * 120.00354 * 180.02562 * 26 25 24 29 29 H 1.09005 * 109.47147 * 299.99856 * 1 2 3 30 30 H 1.08997 * 109.47180 * 60.00177 * 1 2 3 31 31 H 1.09004 * 109.46668 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47360 * 239.99798 * 2 1 3 33 33 H 1.09000 * 109.47660 * 119.99990 * 2 1 3 34 34 H 1.07997 * 120.09231 * 359.96175 * 6 5 4 35 35 H 1.07992 * 119.65737 * 179.97438 * 7 6 5 36 36 H 1.07998 * 119.78843 * 180.02562 * 8 7 6 37 37 H 1.07998 * 120.13622 * 179.97438 * 9 8 7 38 38 H 1.09004 * 109.47381 * 330.00255 * 12 11 3 39 39 H 1.08998 * 109.47508 * 209.99945 * 12 11 3 40 40 H 0.96996 * 119.99708 * 185.00413 * 19 18 16 41 41 H 1.08996 * 109.47002 * 209.99355 * 24 15 13 42 42 H 1.09001 * 109.46839 * 330.00052 * 24 15 13 43 43 H 1.09003 * 109.47382 * 299.99892 * 25 24 15 44 44 H 1.09001 * 109.46554 * 59.99894 * 25 24 15 45 45 H 0.96696 * 117.00441 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2892 2.1463 -1.1024 5 6 2.7256 3.3793 -0.7755 6 6 3.1163 4.4844 -1.5216 7 6 3.5231 5.6350 -0.8807 8 6 3.5465 5.7031 0.5049 9 6 3.1659 4.6268 1.2576 10 6 2.7457 3.4566 0.6270 11 6 2.2880 2.1441 1.0986 12 6 2.1305 1.7014 2.5304 13 6 3.4173 1.0795 3.0084 14 8 4.3972 1.0881 2.2936 15 7 3.4792 0.5135 4.2300 16 6 2.4026 0.5881 5.0755 17 1 1.8420 1.5077 5.1561 18 6 2.0325 -0.5195 5.8285 19 7 2.6180 -1.6782 5.6244 20 14 0.7030 -0.3614 7.1311 21 1 -0.6220 -0.6430 6.5226 22 1 0.9624 -1.3331 8.2237 23 1 0.7117 1.0174 7.6824 24 6 4.6994 -0.1761 4.6568 25 6 5.6310 0.8190 5.3517 26 6 6.8858 0.1096 5.7913 27 8 7.0213 -1.0707 5.5709 28 8 7.8530 0.7888 6.4277 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.1016 4.4419 -2.6006 35 1 3.8267 6.4923 -1.4631 36 1 3.8674 6.6120 0.9920 37 1 3.1863 4.6847 2.3358 38 1 1.3259 0.9690 2.5980 39 1 1.8904 2.5633 3.1530 40 1 2.3105 -2.4669 6.0979 41 1 4.4408 -0.9766 5.3499 42 1 5.2021 -0.5973 3.7862 43 1 5.8897 1.6196 4.6587 44 1 5.1282 1.2403 6.2223 45 1 8.6394 0.2910 6.6898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597807832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:21 Heat of formation + Delta-G solvation = -124.822519 kcal Electronic energy + Delta-G solvation = -30520.332500 eV Core-core repulsion = 26275.258642 eV Total energy + Delta-G solvation = -4245.073858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.44329 -41.33295 -40.34613 -38.79830 -37.27295 -36.83030 -35.69658 -33.82508 -33.61022 -32.47547 -31.43116 -30.31654 -28.54043 -27.08579 -25.48892 -24.94345 -23.69649 -22.41473 -22.05850 -21.30439 -20.68887 -19.26503 -18.60041 -18.06726 -17.87180 -17.65429 -17.52205 -17.13791 -16.91958 -16.39965 -16.19502 -15.85075 -15.77019 -15.21630 -15.04705 -14.70579 -14.55964 -14.33898 -14.20709 -14.01818 -13.66948 -13.48878 -13.34756 -13.02599 -12.97483 -12.86474 -12.81022 -12.70365 -12.63277 -12.56478 -12.26515 -12.06451 -12.03969 -11.87445 -11.67064 -11.65638 -11.05716 -10.86365 -10.35952 -9.52767 -9.46320 -8.93573 -8.21443 -6.14020 0.01432 0.44956 1.17897 1.34365 1.47323 1.53253 1.63252 1.76640 1.94941 2.10509 2.38595 2.80413 3.11138 3.15940 3.45152 3.71629 3.94599 4.03317 4.07009 4.10692 4.14278 4.18705 4.29437 4.39847 4.44393 4.50383 4.56292 4.62895 4.63893 4.74170 4.76978 4.82941 4.96853 5.02783 5.02989 5.08511 5.24356 5.35603 5.38071 5.41697 5.52621 5.55297 5.57164 5.66047 5.82568 6.03870 6.26362 6.44846 6.99116 7.14933 7.57255 8.01208 8.77526 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.003928 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.034517 B = 7126.207684 C = 8659.696798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C 0.029 3.971 4 O -0.204 6.204 5 C 0.019 3.981 6 C -0.115 4.115 7 C -0.092 4.092 8 C -0.133 4.133 9 C -0.090 4.090 10 C -0.136 4.136 11 C -0.163 4.163 12 C -0.037 4.037 13 C 0.470 3.530 14 O -0.626 6.626 15 N -0.449 5.449 16 C -0.349 4.349 17 H 0.104 0.896 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.984 3.016 21 H -0.270 1.270 22 H -0.289 1.289 23 H -0.255 1.255 24 C 0.124 3.876 25 C -0.115 4.115 26 C 0.494 3.506 27 O -0.549 6.549 28 O -0.508 6.508 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.272 0.728 41 H 0.109 0.891 42 H 0.027 0.973 43 H 0.095 0.905 44 H 0.116 0.884 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 11.256 -5.721 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.018 4.018 4 O -0.106 6.106 5 C -0.027 4.027 6 C -0.133 4.133 7 C -0.109 4.109 8 C -0.150 4.150 9 C -0.108 4.108 10 C -0.137 4.137 11 C -0.165 4.165 12 C -0.076 4.076 13 C 0.261 3.739 14 O -0.513 6.513 15 N -0.167 5.167 16 C -0.476 4.476 17 H 0.122 0.878 18 C -0.196 4.196 19 N -0.536 5.536 20 Si 0.808 3.192 21 H -0.195 1.195 22 H -0.215 1.215 23 H -0.179 1.179 24 C 0.000 4.000 25 C -0.154 4.154 26 C 0.338 3.662 27 O -0.440 6.440 28 O -0.321 6.321 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.170 0.830 35 H 0.191 0.809 36 H 0.176 0.824 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.046 0.954 43 H 0.114 0.886 44 H 0.134 0.866 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -1.786 10.875 -6.360 12.724 hybrid contribution 0.277 -0.979 1.060 1.469 sum -1.509 9.897 -5.300 11.327 Atomic orbital electron populations 1.21729 0.91620 1.03633 1.02636 1.20247 0.98142 0.85989 1.04075 1.22400 1.01351 0.94985 0.83090 1.83859 1.70328 1.22348 1.34103 1.20130 1.02577 0.86087 0.93943 1.20343 1.02743 0.89496 1.00715 1.21367 0.97713 0.97247 0.94599 1.21155 1.00646 0.98817 0.94413 1.20536 0.98151 0.91596 1.00560 1.20067 1.04480 0.95455 0.93713 1.20570 1.07152 0.93496 0.95269 1.19634 0.96154 1.01429 0.90419 1.21020 0.90068 0.81847 0.81005 1.90531 1.39562 1.64228 1.56995 1.43568 1.12293 1.48925 1.11953 1.19825 1.08073 0.98983 1.20768 0.87821 1.26318 0.99332 0.93991 1.00007 1.69794 1.40899 1.00111 1.42827 0.85052 0.78062 0.78725 0.77404 1.19496 1.21488 1.17907 1.21163 0.84688 0.95361 0.98792 1.21623 0.90609 1.00091 1.03073 1.23422 0.84675 0.85165 0.72976 1.90697 1.80159 1.18770 1.54352 1.84506 1.30891 1.46892 1.69829 0.92423 0.91579 0.89718 0.88946 0.90419 0.82978 0.80863 0.82371 0.85825 0.88007 0.88081 0.91819 0.87314 0.95392 0.88634 0.86582 0.71228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.89 71.98 0.71 -2.72 16 2 C -0.05 -1.48 6.05 29.85 0.18 -1.30 16 3 C 0.03 1.07 6.48 24.72 0.16 1.23 16 4 O -0.20 -7.44 10.58 -8.97 -0.09 -7.53 16 5 C 0.02 0.66 7.42 22.99 0.17 0.83 16 6 C -0.11 -2.94 10.07 22.35 0.23 -2.72 16 7 C -0.09 -1.90 10.01 22.30 0.22 -1.67 16 8 C -0.13 -3.08 9.98 22.04 0.22 -2.86 16 9 C -0.09 -2.81 10.05 22.20 0.22 -2.58 16 10 C -0.14 -5.02 6.38 -20.22 -0.13 -5.15 16 11 C -0.16 -6.41 4.85 -18.60 -0.09 -6.50 16 12 C -0.04 -1.47 4.54 29.10 0.13 -1.34 16 13 C 0.47 22.62 7.61 87.66 0.67 23.29 16 14 O -0.63 -33.93 15.67 -3.07 -0.05 -33.98 16 15 N -0.45 -21.88 2.52 -635.52 -1.60 -23.48 16 16 C -0.35 -16.31 8.48 84.04 0.71 -15.59 16 17 H 0.10 4.45 7.32 -2.91 -0.02 4.43 16 18 C 0.01 0.29 5.24 84.93 0.45 0.74 16 19 N -0.90 -46.50 10.93 21.66 0.24 -46.26 16 20 Si 0.98 36.98 29.56 68.60 2.03 39.00 16 21 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.29 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 24 C 0.12 6.13 4.25 86.38 0.37 6.50 16 25 C -0.12 -4.65 6.13 29.85 0.18 -4.46 16 26 C 0.49 18.46 8.33 71.23 0.59 19.06 16 27 O -0.55 -24.31 16.74 21.96 0.37 -23.94 16 28 O -0.51 -13.92 13.42 -51.43 -0.69 -14.61 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.46 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.08 2.78 7.68 -2.39 -0.02 2.76 16 34 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 35 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.12 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.10 3.94 7.61 -2.38 -0.02 3.92 16 39 H 0.10 3.69 7.85 -2.39 -0.02 3.67 16 40 H 0.27 13.42 8.32 -92.71 -0.77 12.65 16 41 H 0.11 5.87 5.22 -2.39 -0.01 5.85 16 42 H 0.03 1.52 7.44 -2.39 -0.02 1.50 16 43 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 44 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 45 H 0.43 7.30 9.10 -74.06 -0.67 6.62 16 Total: -1.00 -71.56 388.14 5.55 -66.01 By element: Atomic # 1 Polarization: 39.68 SS G_CDS: 0.36 Total: 40.04 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 5.00 Total: 4.75 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.36 Total: -69.74 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -0.47 Total: -80.06 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.00 kcal Total: -71.56 5.55 -66.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597807832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.812 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds