Wall clock time and date at job start Wed Apr 1 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99554 * 2 1 4 4 H 1.48502 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47112 * 299.99538 * 3 2 1 6 6 H 1.48504 * 109.47262 * 59.99916 * 3 2 1 7 7 C 1.37870 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00285 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50317 * 300.06648 * 9 7 2 11 11 C 1.53045 * 109.52119 * 60.14770 * 9 7 2 12 12 C 1.53036 * 109.53638 * 181.33058 * 11 9 7 13 13 C 1.53621 * 109.24641 * 298.51339 * 12 11 9 14 14 N 1.46919 * 108.54352 * 54.85483 * 13 12 11 15 15 S 1.65606 * 120.63262 * 126.37216 * 14 13 12 16 16 O 1.42096 * 104.27244 * 339.34942 * 15 14 13 17 17 O 1.42097 * 104.27611 * 211.49139 * 15 14 13 18 18 C 1.81401 * 104.44897 * 95.41954 * 15 14 13 19 19 C 1.53004 * 109.47098 * 300.53537 * 18 15 14 20 20 C 1.53003 * 109.47225 * 180.02562 * 19 18 15 21 21 C 1.52998 * 109.46893 * 59.99808 * 20 19 18 22 22 C 1.50706 * 109.47068 * 60.00330 * 21 20 19 23 23 O 1.20829 * 119.99599 * 359.97438 * 22 21 20 24 24 O 1.34227 * 120.00246 * 179.97438 * 22 21 20 25 25 C 1.53001 * 109.47828 * 300.00557 * 21 20 19 26 26 C 1.52998 * 109.47125 * 59.99440 * 25 21 20 27 27 C 1.46931 * 118.74083 * 306.09762 * 14 13 12 28 28 H 0.97000 * 120.00416 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.45977 * 301.35390 * 11 9 7 30 30 H 1.08998 * 109.45976 * 61.32673 * 11 9 7 31 31 H 1.09002 * 109.50022 * 58.58639 * 12 11 9 32 32 H 1.09001 * 109.49816 * 178.68096 * 12 11 9 33 33 H 1.09003 * 109.73980 * 295.11879 * 13 12 11 34 34 H 1.09001 * 109.66933 * 174.55248 * 13 12 11 35 35 H 1.08998 * 109.47395 * 60.53906 * 18 15 14 36 36 H 1.09003 * 109.46941 * 60.00498 * 19 18 15 37 37 H 1.08998 * 109.47298 * 300.00428 * 19 18 15 38 38 H 1.09002 * 109.46812 * 300.00296 * 20 19 18 39 39 H 1.08989 * 109.47306 * 180.02562 * 20 19 18 40 40 H 1.08992 * 109.47398 * 179.97438 * 21 20 19 41 41 H 0.96698 * 117.00030 * 180.02562 * 24 22 21 42 42 H 1.08989 * 109.47535 * 179.97438 * 25 21 20 43 43 H 1.09006 * 109.46405 * 300.00200 * 25 21 20 44 44 H 1.08998 * 109.47178 * 60.00481 * 26 25 21 45 45 H 1.08999 * 109.47057 * 180.02562 * 26 25 21 46 46 H 1.09003 * 109.58703 * 173.64771 * 27 14 13 47 47 H 1.09004 * 109.58442 * 294.07091 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6237 -2.5563 0.8912 11 6 0.3731 -2.5839 -1.2490 12 6 -0.4172 -3.8943 -1.2316 13 6 0.5630 -5.0770 -1.2483 14 7 1.5001 -4.9231 -0.1273 15 16 1.7167 -6.1482 0.9658 16 8 0.5494 -6.9474 0.8320 17 8 2.0124 -5.4815 2.1853 18 6 3.1737 -7.0430 0.3599 19 6 2.9013 -7.5641 -1.0526 20 6 4.1300 -8.3194 -1.5634 21 6 4.4273 -9.4975 -0.6336 22 6 3.2417 -10.4274 -0.6061 23 8 2.2595 -10.1734 -1.2625 24 8 3.2767 -11.5376 0.1475 25 6 4.6996 -8.9765 0.7790 26 6 3.4710 -8.2212 1.2896 27 6 2.2461 -3.6639 0.0021 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3194 -1.7423 -1.2642 30 1 1.0032 -2.5519 -2.1378 31 1 -1.0289 -3.9383 -0.3305 32 1 -1.0597 -3.9433 -2.1107 33 1 1.1154 -5.0842 -2.1880 34 1 0.0124 -6.0114 -1.1387 35 1 4.0310 -6.3702 0.3400 36 1 2.6892 -6.7247 -1.7149 37 1 2.0440 -8.2369 -1.0327 38 1 4.9876 -7.6468 -1.5832 39 1 3.9362 -8.6902 -2.5697 40 1 5.3023 -10.0358 -0.9976 41 1 2.4926 -12.1033 0.1325 42 1 4.9110 -9.8159 1.4413 43 1 5.5572 -8.3039 0.7590 44 1 2.6134 -8.8937 1.3095 45 1 3.6651 -7.8497 2.2958 46 1 2.8064 -3.6656 0.9371 47 1 2.9329 -3.5581 -0.8377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:48 Heat of formation + Delta-G solvation = -181.968343 kcal Electronic energy + Delta-G solvation = -30394.139952 eV Core-core repulsion = 26282.032016 eV Total energy + Delta-G solvation = -4112.107935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10730 -38.13684 -37.65077 -36.83623 -36.32300 -35.60742 -33.29913 -31.90288 -31.29080 -30.90293 -30.02547 -25.10795 -25.03939 -23.64538 -23.09431 -22.29108 -21.59961 -20.04420 -19.45182 -18.33324 -18.19836 -17.23718 -16.85895 -16.51669 -16.37573 -16.07797 -15.53297 -14.87540 -14.59082 -14.52523 -13.95924 -13.82778 -13.76082 -13.43209 -13.13070 -13.02070 -12.76963 -12.68481 -12.48591 -12.41061 -12.11775 -12.07714 -11.80400 -11.77155 -11.66784 -11.45991 -11.29450 -11.24413 -10.97269 -10.81645 -10.66665 -10.64817 -10.32352 -10.16049 -10.07749 -9.89667 -9.73604 -9.33090 -8.78937 -8.40371 -8.10570 -5.98294 -4.05831 0.51758 1.91974 2.72784 2.99115 3.30015 3.38322 3.41324 4.01425 4.10989 4.18908 4.39168 4.43872 4.46030 4.53640 4.82728 4.90250 5.04405 5.07207 5.12779 5.25930 5.30662 5.34082 5.46486 5.52140 5.63298 5.68956 5.75301 5.76101 5.81588 5.86825 5.99644 6.08514 6.26555 6.33738 6.38428 6.50160 6.65887 6.68994 6.94611 7.06768 7.28030 7.48945 7.61300 7.73932 8.00887 8.13260 8.42087 8.97905 9.58721 11.07165 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003069 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.915206 B = 9121.129572 C = 9367.561704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.042 3.958 10 H 0.032 0.968 11 C -0.109 4.109 12 C -0.130 4.130 13 C 0.122 3.878 14 N -0.990 5.990 15 S 2.602 3.398 16 O -0.960 6.960 17 O -0.953 6.953 18 C -0.599 4.599 19 C -0.117 4.117 20 C -0.096 4.096 21 C -0.081 4.081 22 C 0.478 3.522 23 O -0.502 6.502 24 O -0.519 6.519 25 C -0.101 4.101 26 C -0.112 4.112 27 C 0.125 3.875 28 H 0.260 0.740 29 H 0.094 0.906 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.410 0.590 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.502 -21.076 -2.831 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.050 0.950 11 C -0.147 4.147 12 C -0.170 4.170 13 C -0.003 4.003 14 N -0.829 5.829 15 S 2.696 3.304 16 O -0.950 6.950 17 O -0.943 6.943 18 C -0.707 4.707 19 C -0.155 4.155 20 C -0.134 4.134 21 C -0.100 4.100 22 C 0.320 3.680 23 O -0.389 6.389 24 O -0.331 6.331 25 C -0.139 4.139 26 C -0.151 4.151 27 C 0.001 3.999 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.269 0.731 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.899 -20.796 -2.236 22.731 hybrid contribution 0.486 0.529 -0.478 0.863 sum 9.385 -20.267 -2.714 22.499 Atomic orbital electron populations 1.69893 1.05888 1.26319 1.50473 1.24948 0.94843 0.99053 0.95050 0.86542 0.80093 0.83832 0.77511 1.19793 1.21121 1.21074 1.21127 0.92946 0.90361 1.50890 0.92451 1.18929 0.92980 0.90749 0.95147 0.94966 1.21578 0.99362 0.95410 0.98358 1.22017 0.97539 0.96504 1.00901 1.21542 0.90890 0.99821 0.88050 1.57576 1.53528 1.27804 1.43972 1.05271 0.76251 0.74215 0.74614 1.93536 1.44055 1.70971 1.86474 1.93594 1.86114 1.72259 1.42352 1.30688 1.23262 1.10371 1.06360 1.21601 1.00590 1.01643 0.91660 1.21375 0.98780 0.95075 0.98181 1.21148 0.94904 0.94654 0.99300 1.23555 0.89214 0.79837 0.75377 1.90702 1.34374 1.72662 1.41185 1.84520 1.47999 1.35307 1.65246 1.21460 0.98260 1.00623 0.93595 1.21397 0.99664 0.95579 0.98450 1.21811 0.94996 0.82657 1.00419 0.93036 0.88818 0.94668 0.92332 0.92659 0.92246 0.90041 0.84469 0.89819 0.87987 0.89952 0.90429 0.87044 0.73141 0.89859 0.89537 0.91035 0.89609 0.90713 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 11.32 55.43 0.63 -24.51 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -13.75 8.56 -34.44 -0.29 -14.05 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.11 -2.49 4.96 -26.69 -0.13 -2.63 16 12 C -0.13 -2.52 6.10 -26.39 -0.16 -2.68 16 13 C 0.12 2.05 5.81 -3.49 -0.02 2.03 16 14 N -0.99 -17.63 2.90 -113.27 -0.33 -17.95 16 15 S 2.60 43.75 4.87 -107.50 -0.52 43.22 16 16 O -0.96 -18.22 16.35 -57.54 -0.94 -19.16 16 17 O -0.95 -19.23 16.78 -57.54 -0.97 -20.20 16 18 C -0.60 -7.00 2.86 -26.73 -0.08 -7.07 16 19 C -0.12 -1.31 4.78 -26.73 -0.13 -1.44 16 20 C -0.10 -0.80 5.09 -26.73 -0.14 -0.94 16 21 C -0.08 -0.60 3.11 -91.77 -0.29 -0.89 16 22 C 0.48 4.50 6.11 36.01 0.22 4.72 16 23 O -0.50 -6.35 14.42 -18.75 -0.27 -6.63 16 24 O -0.52 -3.68 13.33 -39.25 -0.52 -4.20 16 25 C -0.10 -0.73 5.39 -26.73 -0.14 -0.87 16 26 C -0.11 -1.14 4.99 -26.73 -0.13 -1.27 16 27 C 0.13 2.51 5.63 -3.71 -0.02 2.49 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.09 2.43 6.05 -51.93 -0.31 2.12 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 34 H 0.08 1.30 6.72 -51.93 -0.35 0.95 16 35 H 0.14 1.34 8.14 -51.92 -0.42 0.92 16 36 H 0.08 0.91 7.02 -51.93 -0.36 0.54 16 37 H 0.10 1.35 5.50 -51.93 -0.29 1.06 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.63 8.10 -51.94 -0.42 0.21 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.41 1.45 9.10 45.56 0.41 1.86 16 42 H 0.08 0.51 8.11 -51.94 -0.42 0.08 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.78 7.22 -51.93 -0.37 0.40 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.07 1.50 7.03 -51.93 -0.36 1.13 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -34.91 372.03 -10.61 -45.52 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.66 Total: 2.49 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -1.61 Total: -20.15 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.30 Total: -42.46 kcal Atomic # 8 Polarization: -47.49 SS G_CDS: -2.70 Total: -50.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 43.75 SS G_CDS: -0.52 Total: 43.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.91 -10.61 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.448 kcal (2) G-P(sol) polarization free energy of solvation -34.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds