Wall clock time and date at job start Wed Apr 1 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99554 * 2 1 4 4 H 1.48502 * 109.46603 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47112 * 299.99538 * 3 2 1 6 6 H 1.48504 * 109.47262 * 59.99916 * 3 2 1 7 7 C 1.37870 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00285 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.50317 * 300.06648 * 9 7 2 11 11 C 1.53045 * 109.52119 * 60.14770 * 9 7 2 12 12 C 1.53036 * 109.53638 * 181.33058 * 11 9 7 13 13 C 1.53621 * 109.24641 * 298.51339 * 12 11 9 14 14 N 1.46919 * 108.54352 * 54.85483 * 13 12 11 15 15 S 1.65606 * 120.63262 * 126.37216 * 14 13 12 16 16 O 1.42096 * 104.27244 * 339.34942 * 15 14 13 17 17 O 1.42097 * 104.27611 * 211.49139 * 15 14 13 18 18 C 1.81401 * 104.44897 * 95.41954 * 15 14 13 19 19 C 1.53004 * 109.47098 * 300.53537 * 18 15 14 20 20 C 1.53003 * 109.47225 * 180.02562 * 19 18 15 21 21 C 1.52998 * 109.46893 * 59.99808 * 20 19 18 22 22 C 1.50706 * 109.47068 * 60.00330 * 21 20 19 23 23 O 1.20829 * 119.99599 * 359.97438 * 22 21 20 24 24 O 1.34227 * 120.00246 * 179.97438 * 22 21 20 25 25 C 1.53001 * 109.47828 * 300.00557 * 21 20 19 26 26 C 1.52998 * 109.47125 * 59.99440 * 25 21 20 27 27 C 1.46931 * 118.74083 * 306.09762 * 14 13 12 28 28 H 0.97000 * 120.00416 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.45977 * 301.35390 * 11 9 7 30 30 H 1.08998 * 109.45976 * 61.32673 * 11 9 7 31 31 H 1.09002 * 109.50022 * 58.58639 * 12 11 9 32 32 H 1.09001 * 109.49816 * 178.68096 * 12 11 9 33 33 H 1.09003 * 109.73980 * 295.11879 * 13 12 11 34 34 H 1.09001 * 109.66933 * 174.55248 * 13 12 11 35 35 H 1.08998 * 109.47395 * 60.53906 * 18 15 14 36 36 H 1.09003 * 109.46941 * 60.00498 * 19 18 15 37 37 H 1.08998 * 109.47298 * 300.00428 * 19 18 15 38 38 H 1.09002 * 109.46812 * 300.00296 * 20 19 18 39 39 H 1.08989 * 109.47306 * 180.02562 * 20 19 18 40 40 H 1.08992 * 109.47398 * 179.97438 * 21 20 19 41 41 H 0.96698 * 117.00030 * 180.02562 * 24 22 21 42 42 H 1.08989 * 109.47535 * 179.97438 * 25 21 20 43 43 H 1.09006 * 109.46405 * 300.00200 * 25 21 20 44 44 H 1.08998 * 109.47178 * 60.00481 * 26 25 21 45 45 H 1.08999 * 109.47057 * 180.02562 * 26 25 21 46 46 H 1.09003 * 109.58703 * 173.64771 * 27 14 13 47 47 H 1.09004 * 109.58442 * 294.07091 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6237 -2.5563 0.8912 11 6 0.3731 -2.5839 -1.2490 12 6 -0.4172 -3.8943 -1.2316 13 6 0.5630 -5.0770 -1.2483 14 7 1.5001 -4.9231 -0.1273 15 16 1.7167 -6.1482 0.9658 16 8 0.5494 -6.9474 0.8320 17 8 2.0124 -5.4815 2.1853 18 6 3.1737 -7.0430 0.3599 19 6 2.9013 -7.5641 -1.0526 20 6 4.1300 -8.3194 -1.5634 21 6 4.4273 -9.4975 -0.6336 22 6 3.2417 -10.4274 -0.6061 23 8 2.2595 -10.1734 -1.2625 24 8 3.2767 -11.5376 0.1475 25 6 4.6996 -8.9765 0.7790 26 6 3.4710 -8.2212 1.2896 27 6 2.2461 -3.6639 0.0021 28 1 -0.4851 0.8400 -0.0004 29 1 -0.3194 -1.7423 -1.2642 30 1 1.0032 -2.5519 -2.1378 31 1 -1.0289 -3.9383 -0.3305 32 1 -1.0597 -3.9433 -2.1107 33 1 1.1154 -5.0842 -2.1880 34 1 0.0124 -6.0114 -1.1387 35 1 4.0310 -6.3702 0.3400 36 1 2.6892 -6.7247 -1.7149 37 1 2.0440 -8.2369 -1.0327 38 1 4.9876 -7.6468 -1.5832 39 1 3.9362 -8.6902 -2.5697 40 1 5.3023 -10.0358 -0.9976 41 1 2.4926 -12.1033 0.1325 42 1 4.9110 -9.8159 1.4413 43 1 5.5572 -8.3039 0.7590 44 1 2.6134 -8.8937 1.3095 45 1 3.6651 -7.8497 2.2958 46 1 2.8064 -3.6656 0.9371 47 1 2.9329 -3.5581 -0.8377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:48 Heat of formation + Delta-G solvation = -207.125927 kcal Electronic energy + Delta-G solvation = -30395.230866 eV Core-core repulsion = 26282.032016 eV Total energy + Delta-G solvation = -4113.198850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77049 -39.28525 -38.83297 -38.25003 -37.04475 -36.98983 -35.19363 -32.86133 -32.54799 -31.91419 -31.71240 -27.02977 -25.77865 -25.13572 -23.85114 -23.42635 -22.96866 -21.15278 -20.66709 -19.69431 -18.92417 -18.74668 -18.07674 -17.87569 -17.32052 -17.11539 -16.81835 -16.50609 -15.67970 -15.40304 -15.22709 -15.15493 -14.91017 -14.54421 -14.46233 -14.39232 -14.21185 -13.83683 -13.71280 -13.31173 -13.23686 -13.19327 -13.07070 -12.91478 -12.81588 -12.75186 -12.68255 -12.51293 -12.45320 -12.19959 -11.97618 -11.83300 -11.78205 -11.57731 -11.32383 -11.09962 -11.04742 -10.97520 -10.73550 -10.40751 -9.66650 -8.05181 -6.20795 -0.76504 1.27582 1.43392 1.45249 1.56455 1.64535 2.22023 2.46153 2.86570 3.05802 3.21771 3.32518 3.55140 3.77938 3.84187 3.87351 3.98649 4.21872 4.26440 4.30445 4.35146 4.43161 4.48564 4.57527 4.63707 4.67257 4.77246 4.82784 4.86862 4.90003 4.97958 4.98614 5.08404 5.11125 5.16158 5.19558 5.29632 5.31351 5.35653 5.57055 5.66955 5.74321 5.75416 6.00594 6.18975 6.39141 6.92473 7.04862 7.47618 8.99196 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.003069 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.915206 B = 9121.129572 C = 9367.561704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.009 3.991 3 Si 0.958 3.042 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.288 1.288 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.034 3.966 10 H -0.022 1.022 11 C -0.100 4.100 12 C -0.129 4.129 13 C 0.124 3.876 14 N -0.997 5.997 15 S 2.587 3.413 16 O -0.994 6.994 17 O -1.000 7.000 18 C -0.556 4.556 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.082 4.082 22 C 0.475 3.525 23 O -0.543 6.543 24 O -0.515 6.515 25 C -0.094 4.094 26 C -0.124 4.124 27 C 0.137 3.863 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.169 0.831 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.147 0.853 41 H 0.423 0.577 42 H 0.099 0.901 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.070 0.930 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.327 -22.688 -4.320 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.190 4.190 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.214 1.214 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.014 3.986 10 H -0.003 1.003 11 C -0.139 4.139 12 C -0.168 4.168 13 C -0.001 4.001 14 N -0.834 5.834 15 S 2.688 3.312 16 O -0.984 6.984 17 O -0.991 6.991 18 C -0.671 4.671 19 C -0.162 4.162 20 C -0.132 4.132 21 C -0.101 4.101 22 C 0.319 3.681 23 O -0.434 6.434 24 O -0.328 6.328 25 C -0.132 4.132 26 C -0.164 4.164 27 C 0.013 3.987 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.187 0.813 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.165 0.835 41 H 0.284 0.716 42 H 0.118 0.882 43 H 0.131 0.869 44 H 0.076 0.924 45 H 0.110 0.890 46 H 0.088 0.912 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.670 -22.393 -3.694 25.992 hybrid contribution -0.737 0.898 0.040 1.162 sum 11.933 -21.495 -3.654 24.855 Atomic orbital electron populations 1.70068 1.07467 1.26949 1.51483 1.25802 0.95623 1.02669 0.94880 0.85505 0.79399 0.79465 0.77238 1.18356 1.20625 1.21448 1.21553 0.93508 0.91468 1.50300 0.91648 1.18916 0.93592 0.92516 0.93612 1.00346 1.21367 0.98767 0.95886 0.97852 1.21973 0.97996 0.96133 1.00729 1.21621 0.90658 0.98510 0.89272 1.57451 1.54206 1.27784 1.44007 1.05548 0.77686 0.74060 0.73877 1.93484 1.47270 1.71066 1.86618 1.93528 1.86941 1.73579 1.45009 1.30314 1.19316 1.10458 1.06967 1.21707 1.01696 1.01850 0.90991 1.21430 0.97928 0.95481 0.98332 1.21319 0.95141 0.94230 0.99361 1.24115 0.89294 0.80152 0.74573 1.90699 1.36029 1.73640 1.43015 1.84490 1.48855 1.34971 1.64486 1.21517 0.97008 1.01226 0.93487 1.21621 1.01099 0.94985 0.98661 1.21508 0.93993 0.81869 1.01372 0.93235 0.92522 0.93507 0.95218 0.90092 0.88717 0.89358 0.81289 0.89324 0.90230 0.87228 0.90160 0.83498 0.71601 0.88238 0.86895 0.92429 0.89012 0.91199 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 11.32 21.44 0.24 -54.04 16 2 C 0.01 0.47 5.30 84.65 0.45 0.92 16 3 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.53 -28.77 8.56 25.60 0.22 -28.55 16 8 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.72 2.25 -11.46 -0.03 1.69 16 10 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 11 C -0.10 -4.73 4.96 30.62 0.15 -4.57 16 12 C -0.13 -5.11 6.10 30.82 0.19 -4.92 16 13 C 0.12 4.08 5.81 86.51 0.50 4.59 16 14 N -1.00 -35.34 2.90 -512.28 -1.48 -36.83 16 15 S 2.59 87.68 4.87 -56.49 -0.28 87.40 16 16 O -0.99 -39.07 16.35 -127.65 -2.09 -41.16 16 17 O -1.00 -41.78 16.78 -127.65 -2.14 -43.92 16 18 C -0.56 -11.54 2.86 30.60 0.09 -11.46 16 19 C -0.12 -2.42 4.78 30.60 0.15 -2.28 16 20 C -0.09 -1.14 5.09 30.59 0.16 -0.98 16 21 C -0.08 -0.85 3.11 -11.54 -0.04 -0.88 16 22 C 0.47 7.75 6.11 71.24 0.44 8.18 16 23 O -0.54 -13.15 14.42 21.96 0.32 -12.83 16 24 O -0.51 -6.04 13.33 -51.39 -0.68 -6.73 16 25 C -0.09 -0.90 5.39 30.59 0.16 -0.74 16 26 C -0.12 -2.20 4.99 30.59 0.15 -2.05 16 27 C 0.14 5.47 5.63 86.36 0.49 5.95 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.06 3.08 6.05 -2.39 -0.01 3.07 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.09 2.48 7.94 -2.39 -0.02 2.46 16 34 H 0.09 2.81 6.72 -2.39 -0.02 2.79 16 35 H 0.17 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.09 1.64 7.02 -2.39 -0.02 1.62 16 37 H 0.08 2.01 5.50 -2.39 -0.01 1.99 16 38 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 40 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.42 2.31 9.10 -74.06 -0.67 1.64 16 42 H 0.10 0.72 8.11 -2.39 -0.02 0.70 16 43 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.06 1.19 7.22 -2.39 -0.02 1.17 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.07 2.82 7.03 -2.39 -0.02 2.80 16 47 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 Total: -1.00 -81.77 372.03 -0.70 -82.47 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.31 Total: 15.26 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.08 Total: -35.08 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.24 Total: -90.86 kcal Atomic # 8 Polarization: -100.05 SS G_CDS: -4.60 Total: -104.64 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 87.68 SS G_CDS: -0.28 Total: 87.40 kcal Total: -81.77 -0.70 -82.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.653 kcal (2) G-P(sol) polarization free energy of solvation -81.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds