Wall clock time and date at job start Wed Apr 1 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48498 * 109.47135 * 240.00395 * 3 2 1 5 5 H 1.48500 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47050 * 120.00564 * 3 2 1 7 7 C 1.37874 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47067 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47240 * 179.97438 * 11 10 9 13 13 O 1.42098 * 110.54246 * 68.38021 * 12 11 10 14 14 O 1.42095 * 110.54260 * 291.62896 * 12 11 10 15 15 N 1.65596 * 104.44777 * 180.02562 * 12 11 10 16 16 C 1.47960 * 122.26720 * 96.84996 * 15 12 11 17 17 C 1.52700 * 110.98909 * 231.69313 * 16 15 12 18 18 C 1.53823 * 111.69146 * 311.59090 * 17 16 15 19 19 H 1.09003 * 109.97777 * 298.09242 * 18 17 16 20 20 C 1.50696 * 109.91051 * 176.97189 * 18 17 16 21 21 O 1.20828 * 120.00588 * 242.24147 * 20 18 17 22 22 O 1.34231 * 119.99616 * 61.96766 * 20 18 17 23 23 C 1.51543 * 107.20229 * 57.54955 * 18 17 16 24 24 H 1.09003 * 110.18600 * 54.30167 * 23 18 17 25 25 C 1.53019 * 116.91143 * 181.13350 * 23 18 17 26 26 C 1.55465 * 102.74433 * 157.85383 * 25 23 18 27 27 C 1.55057 * 106.32756 * 335.96572 * 26 25 23 28 28 C 1.45300 * 122.27144 * 276.86683 * 15 12 11 29 29 H 1.08998 * 109.52477 * 238.15138 * 28 15 12 30 30 H 0.97004 * 119.99982 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46894 * 59.99899 * 9 7 2 32 32 H 1.08999 * 109.46694 * 299.99863 * 9 7 2 33 33 H 1.09004 * 109.47224 * 59.99997 * 10 9 7 34 34 H 1.09002 * 109.47628 * 300.00133 * 10 9 7 35 35 H 1.08999 * 109.47203 * 60.00225 * 11 10 9 36 36 H 1.08995 * 109.47519 * 299.99856 * 11 10 9 37 37 H 1.08996 * 109.17129 * 352.08128 * 16 15 12 38 38 H 1.08998 * 109.17366 * 111.35354 * 16 15 12 39 39 H 1.09008 * 109.03668 * 191.02785 * 17 16 15 40 40 H 1.09000 * 109.04038 * 72.16327 * 17 16 15 41 41 H 0.96708 * 117.00150 * 180.27335 * 22 20 18 42 42 H 1.09001 * 110.75678 * 276.16588 * 25 23 18 43 43 H 1.09001 * 110.75752 * 39.35552 * 25 23 18 44 44 H 1.09001 * 110.08279 * 95.18584 * 26 25 23 45 45 H 1.08997 * 110.08245 * 216.74549 * 26 25 23 46 46 H 1.08995 * 110.29917 * 114.96212 * 27 26 25 47 47 H 1.08998 * 110.30344 * 237.11243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 16 2.6591 -6.3659 -0.0035 13 8 3.3576 -6.4267 1.2325 14 8 3.3541 -6.4257 -1.2415 15 7 1.7087 -7.7220 -0.0033 16 6 1.3761 -8.4536 -1.2456 17 6 -0.1310 -8.6665 -1.3681 18 6 -0.7344 -9.2221 -0.0668 19 1 -0.3004 -10.1963 0.1587 20 6 -2.2296 -9.3467 -0.2067 21 8 -2.9593 -8.7067 0.5130 22 8 -2.7510 -10.1645 -1.1347 23 6 -0.3995 -8.2400 1.0376 24 1 -0.7362 -7.2394 0.7660 25 6 -0.8770 -8.5940 2.4476 26 6 0.0774 -7.7639 3.3514 27 6 1.3578 -7.5090 2.5150 28 6 1.1446 -8.2738 1.2167 29 1 1.4777 -9.3045 1.3385 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6248 -2.5570 0.8897 33 1 2.8726 -3.6047 0.8877 34 1 2.8713 -3.6039 -0.8922 35 1 0.8527 -5.0447 -0.8905 36 1 0.8547 -5.0450 0.8894 37 1 1.7277 -7.8806 -2.1035 38 1 1.8742 -9.4231 -1.2343 39 1 -0.3261 -9.3688 -2.1787 40 1 -0.6067 -7.7142 -1.6024 41 1 -3.7156 -10.2081 -1.1895 42 1 -1.9124 -8.2859 2.5935 43 1 -0.7627 -9.6612 2.6376 44 1 -0.3902 -6.8162 3.6186 45 1 0.3242 -8.3269 4.2516 46 1 1.4712 -6.4440 2.3122 47 1 2.2342 -7.8904 3.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:22 Heat of formation + Delta-G solvation = -181.693076 kcal Electronic energy + Delta-G solvation = -29980.794606 eV Core-core repulsion = 25868.698607 eV Total energy + Delta-G solvation = -4112.095999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16457 -39.48472 -37.10351 -36.41686 -35.78359 -35.42171 -34.67067 -33.38889 -32.19083 -29.27978 -28.04820 -27.80070 -25.88286 -23.77774 -22.56884 -21.83092 -21.30323 -20.40959 -20.15243 -18.77736 -18.26780 -17.17347 -16.92374 -16.69156 -16.55977 -15.92544 -15.63210 -15.36616 -15.09880 -14.52529 -14.35058 -14.30665 -14.14301 -13.80149 -13.73103 -13.01711 -12.69649 -12.56432 -12.48226 -12.28356 -12.05883 -11.94042 -11.90406 -11.83693 -11.79513 -11.33542 -11.25368 -11.11529 -11.10411 -10.99426 -10.89886 -10.88174 -10.79275 -10.69068 -10.43042 -10.38524 -9.95309 -9.48657 -9.24041 -8.94314 -8.40380 -6.05315 -4.08718 0.39233 1.91218 2.64520 2.70996 3.32144 3.36110 3.39157 3.89639 3.97988 4.16576 4.27184 4.40930 4.42808 4.54652 4.64264 4.75543 4.83684 5.01599 5.07588 5.10100 5.15405 5.23361 5.26089 5.30206 5.30945 5.39388 5.45336 5.49755 5.57401 5.71757 5.82645 5.86319 5.94440 5.96415 6.03236 6.08623 6.21775 6.24919 6.27675 6.44075 6.47508 6.86284 7.56704 7.60532 7.66633 7.92278 8.32607 8.97247 9.55982 11.05772 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003133 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.649810 B = 8934.506548 C = 9538.958755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.032 3.968 10 C -0.105 4.105 11 C -0.611 4.611 12 S 2.599 3.401 13 O -0.953 6.953 14 O -0.961 6.961 15 N -0.998 5.998 16 C 0.128 3.872 17 C -0.128 4.128 18 C -0.065 4.065 19 H 0.112 0.888 20 C 0.481 3.519 21 O -0.505 6.505 22 O -0.519 6.519 23 C -0.103 4.103 24 H 0.093 0.907 25 C -0.115 4.115 26 C -0.122 4.122 27 C -0.130 4.130 28 C 0.150 3.850 29 H 0.083 0.917 30 H 0.262 0.738 31 H 0.020 0.980 32 H 0.021 0.979 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.409 0.591 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 -24.795 0.338 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.144 4.144 11 C -0.743 4.743 12 S 2.696 3.304 13 O -0.943 6.943 14 O -0.951 6.951 15 N -0.834 5.834 16 C 0.003 3.997 17 C -0.167 4.167 18 C -0.084 4.084 19 H 0.130 0.870 20 C 0.323 3.677 21 O -0.392 6.392 22 O -0.331 6.331 23 C -0.123 4.123 24 H 0.111 0.889 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.169 4.169 28 C 0.043 3.957 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.268 0.732 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.093 0.907 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.647 -24.491 0.542 24.640 hybrid contribution -1.097 1.127 -0.112 1.577 sum -3.744 -23.364 0.430 23.666 Atomic orbital electron populations 1.69952 1.06084 1.26889 1.50447 1.25015 0.94878 0.99340 0.95073 0.86619 0.79580 0.82847 0.78767 1.20114 1.21235 1.20108 1.21213 0.93202 0.90904 1.51265 0.92433 1.19049 0.93490 0.90403 0.97723 1.21495 0.99357 0.91677 1.01875 1.30671 1.16399 1.15977 1.11204 1.05483 0.75781 0.74894 0.74207 1.93586 1.70325 1.85582 1.44803 1.93548 1.70415 1.85881 1.45298 1.57924 1.69577 1.43657 1.12199 1.21376 0.94078 0.98024 0.86242 1.21966 0.96249 1.02722 0.95774 1.20879 0.87321 1.02111 0.98066 0.86969 1.23524 0.92343 0.75391 0.76445 1.90738 1.62177 1.43175 1.43077 1.84539 1.30208 1.62480 1.55839 1.22181 0.96312 0.99817 0.94007 0.88888 1.22173 1.00346 0.99764 0.93044 1.22563 0.94555 1.00772 0.98114 1.22273 0.99184 1.01228 0.94167 1.21265 0.91343 0.98742 0.84378 0.89859 0.92836 0.96176 0.96112 0.91605 0.91661 0.85516 0.85446 0.88190 0.90742 0.89056 0.90605 0.73247 0.89979 0.91644 0.90890 0.91192 0.90711 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16 10 C -0.10 -2.13 5.16 -26.74 -0.14 -2.27 16 11 C -0.61 -9.55 6.03 37.16 0.22 -9.33 16 12 S 2.60 38.31 4.92 -107.50 -0.53 37.78 16 13 O -0.95 -16.03 15.07 -57.54 -0.87 -16.90 16 14 O -0.96 -16.54 16.69 -57.54 -0.96 -17.50 16 15 N -1.00 -10.95 3.18 -106.23 -0.34 -11.29 16 16 C 0.13 1.09 6.34 -3.39 -0.02 1.07 16 17 C -0.13 -0.92 5.22 -26.46 -0.14 -1.06 16 18 C -0.06 -0.49 2.44 -92.08 -0.22 -0.72 16 19 H 0.11 0.65 8.00 -51.93 -0.42 0.23 16 20 C 0.48 4.24 7.50 36.00 0.27 4.51 16 21 O -0.50 -6.07 15.38 -18.75 -0.29 -6.36 16 22 O -0.52 -3.34 13.39 -39.26 -0.53 -3.86 16 23 C -0.10 -0.96 1.44 -90.03 -0.13 -1.09 16 24 H 0.09 1.02 8.13 -51.93 -0.42 0.59 16 25 C -0.12 -1.03 5.77 -25.41 -0.15 -1.18 16 26 C -0.12 -1.13 6.88 -24.33 -0.17 -1.29 16 27 C -0.13 -1.42 4.89 -26.06 -0.13 -1.55 16 28 C 0.15 1.47 2.83 -67.67 -0.19 1.27 16 29 H 0.08 0.68 8.00 -51.93 -0.42 0.27 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.13 1.79 8.14 -51.92 -0.42 1.36 16 36 H 0.13 1.82 7.11 -51.93 -0.37 1.46 16 37 H 0.10 0.89 7.08 -51.93 -0.37 0.52 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.41 1.14 9.10 45.56 0.41 1.56 16 42 H 0.08 0.85 7.15 -51.93 -0.37 0.48 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.93 5.15 -51.93 -0.27 0.66 16 47 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -36.12 380.29 -10.23 -46.35 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.83 Total: -0.03 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -1.34 Total: -24.61 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.40 Total: -37.23 kcal Atomic # 8 Polarization: -41.97 SS G_CDS: -2.64 Total: -44.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 38.31 SS G_CDS: -0.53 Total: 37.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.12 -10.23 -46.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.343 kcal (2) G-P(sol) polarization free energy of solvation -36.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds