Wall clock time and date at job start Wed Apr 1 2020 03:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99893 * 2 1 4 4 H 1.48498 * 109.47135 * 240.00395 * 3 2 1 5 5 H 1.48500 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47050 * 120.00564 * 3 2 1 7 7 C 1.37874 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99924 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.46953 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47067 * 179.97438 * 10 9 7 12 12 S 1.81406 * 109.47240 * 179.97438 * 11 10 9 13 13 O 1.42098 * 110.54246 * 68.38021 * 12 11 10 14 14 O 1.42095 * 110.54260 * 291.62896 * 12 11 10 15 15 N 1.65596 * 104.44777 * 180.02562 * 12 11 10 16 16 C 1.47960 * 122.26720 * 96.84996 * 15 12 11 17 17 C 1.52700 * 110.98909 * 231.69313 * 16 15 12 18 18 C 1.53823 * 111.69146 * 311.59090 * 17 16 15 19 19 H 1.09003 * 109.97777 * 298.09242 * 18 17 16 20 20 C 1.50696 * 109.91051 * 176.97189 * 18 17 16 21 21 O 1.20828 * 120.00588 * 242.24147 * 20 18 17 22 22 O 1.34231 * 119.99616 * 61.96766 * 20 18 17 23 23 C 1.51543 * 107.20229 * 57.54955 * 18 17 16 24 24 H 1.09003 * 110.18600 * 54.30167 * 23 18 17 25 25 C 1.53019 * 116.91143 * 181.13350 * 23 18 17 26 26 C 1.55465 * 102.74433 * 157.85383 * 25 23 18 27 27 C 1.55057 * 106.32756 * 335.96572 * 26 25 23 28 28 C 1.45300 * 122.27144 * 276.86683 * 15 12 11 29 29 H 1.08998 * 109.52477 * 238.15138 * 28 15 12 30 30 H 0.97004 * 119.99982 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.46894 * 59.99899 * 9 7 2 32 32 H 1.08999 * 109.46694 * 299.99863 * 9 7 2 33 33 H 1.09004 * 109.47224 * 59.99997 * 10 9 7 34 34 H 1.09002 * 109.47628 * 300.00133 * 10 9 7 35 35 H 1.08999 * 109.47203 * 60.00225 * 11 10 9 36 36 H 1.08995 * 109.47519 * 299.99856 * 11 10 9 37 37 H 1.08996 * 109.17129 * 352.08128 * 16 15 12 38 38 H 1.08998 * 109.17366 * 111.35354 * 16 15 12 39 39 H 1.09008 * 109.03668 * 191.02785 * 17 16 15 40 40 H 1.09000 * 109.04038 * 72.16327 * 17 16 15 41 41 H 0.96708 * 117.00150 * 180.27335 * 22 20 18 42 42 H 1.09001 * 110.75678 * 276.16588 * 25 23 18 43 43 H 1.09001 * 110.75752 * 39.35552 * 25 23 18 44 44 H 1.09001 * 110.08279 * 95.18584 * 26 25 23 45 45 H 1.08997 * 110.08245 * 216.74549 * 26 25 23 46 46 H 1.08995 * 110.29917 * 114.96212 * 27 26 25 47 47 H 1.08998 * 110.30344 * 237.11243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 16 2.6591 -6.3659 -0.0035 13 8 3.3576 -6.4267 1.2325 14 8 3.3541 -6.4257 -1.2415 15 7 1.7087 -7.7220 -0.0033 16 6 1.3761 -8.4536 -1.2456 17 6 -0.1310 -8.6665 -1.3681 18 6 -0.7344 -9.2221 -0.0668 19 1 -0.3004 -10.1963 0.1587 20 6 -2.2296 -9.3467 -0.2067 21 8 -2.9593 -8.7067 0.5130 22 8 -2.7510 -10.1645 -1.1347 23 6 -0.3995 -8.2400 1.0376 24 1 -0.7362 -7.2394 0.7660 25 6 -0.8770 -8.5940 2.4476 26 6 0.0774 -7.7639 3.3514 27 6 1.3578 -7.5090 2.5150 28 6 1.1446 -8.2738 1.2167 29 1 1.4777 -9.3045 1.3385 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6248 -2.5570 0.8897 33 1 2.8726 -3.6047 0.8877 34 1 2.8713 -3.6039 -0.8922 35 1 0.8527 -5.0447 -0.8905 36 1 0.8547 -5.0450 0.8894 37 1 1.7277 -7.8806 -2.1035 38 1 1.8742 -9.4231 -1.2343 39 1 -0.3261 -9.3688 -2.1787 40 1 -0.6067 -7.7142 -1.6024 41 1 -3.7156 -10.2081 -1.1895 42 1 -1.9124 -8.2859 2.5935 43 1 -0.7627 -9.6612 2.6376 44 1 -0.3902 -6.8162 3.6186 45 1 0.3242 -8.3269 4.2516 46 1 1.4712 -6.4440 2.3122 47 1 2.2342 -7.8904 3.0390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:21 Heat of formation + Delta-G solvation = -207.095534 kcal Electronic energy + Delta-G solvation = -29981.896139 eV Core-core repulsion = 25868.698607 eV Total energy + Delta-G solvation = -4113.197532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85445 -40.20536 -38.33910 -37.09501 -37.03136 -36.52732 -36.15886 -34.19898 -34.14657 -29.98275 -29.71232 -28.77843 -26.65304 -25.65373 -23.31886 -22.66450 -22.39757 -21.71199 -20.89348 -19.89060 -18.92047 -18.68059 -18.10931 -17.70873 -17.51989 -17.17782 -16.58023 -16.48571 -16.27984 -16.02136 -15.65791 -15.08459 -14.94445 -14.58492 -14.53212 -14.41894 -14.11860 -13.79599 -13.54616 -13.45862 -13.26967 -13.24784 -13.06789 -13.01626 -12.75618 -12.72500 -12.68025 -12.48409 -12.22717 -12.07997 -11.86651 -11.84004 -11.76867 -11.68852 -11.57490 -11.45354 -11.38847 -11.23353 -11.01506 -10.59825 -9.91097 -8.24654 -6.36664 -0.80518 1.26380 1.38498 1.41501 1.49483 1.61179 2.16095 2.38088 2.75155 3.08477 3.10008 3.15128 3.55599 3.67035 3.71257 3.82266 3.86014 3.99703 4.08094 4.17433 4.33065 4.36732 4.43253 4.48026 4.54969 4.58809 4.65865 4.69118 4.81867 4.85283 4.86585 4.89593 5.01492 5.12135 5.14097 5.16949 5.21655 5.28929 5.30425 5.41239 5.51690 5.57536 5.64930 5.71407 5.75789 6.16101 6.78635 7.06320 7.32973 8.86698 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003133 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.649810 B = 8934.506548 C = 9538.958755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.554 4.554 8 H 0.062 0.938 9 C 0.033 3.967 10 C -0.103 4.103 11 C -0.617 4.617 12 S 2.626 3.374 13 O -0.973 6.973 14 O -0.983 6.983 15 N -0.991 5.991 16 C 0.120 3.880 17 C -0.123 4.123 18 C -0.063 4.063 19 H 0.144 0.856 20 C 0.486 3.514 21 O -0.545 6.545 22 O -0.511 6.511 23 C -0.102 4.102 24 H 0.068 0.932 25 C -0.109 4.109 26 C -0.119 4.119 27 C -0.139 4.139 28 C 0.148 3.852 29 H 0.115 0.885 30 H 0.265 0.735 31 H 0.000 1.000 32 H -0.001 1.001 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.425 0.575 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 -27.027 -0.117 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.142 4.142 11 C -0.747 4.747 12 S 2.722 3.278 13 O -0.964 6.964 14 O -0.974 6.974 15 N -0.829 5.829 16 C -0.004 4.004 17 C -0.162 4.162 18 C -0.082 4.082 19 H 0.161 0.839 20 C 0.330 3.670 21 O -0.435 6.435 22 O -0.324 6.324 23 C -0.123 4.123 24 H 0.086 0.914 25 C -0.147 4.147 26 C -0.157 4.157 27 C -0.177 4.177 28 C 0.041 3.959 29 H 0.133 0.867 30 H 0.074 0.926 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.286 0.714 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.015 -26.722 0.063 26.798 hybrid contribution -1.378 1.732 0.014 2.213 sum -3.393 -24.990 0.078 25.220 Atomic orbital electron populations 1.70079 1.07738 1.28002 1.51209 1.25965 0.95807 1.03339 0.94437 0.85510 0.78351 0.77992 0.79301 1.19067 1.20583 1.19140 1.21707 0.93764 0.92423 1.51345 0.92017 1.18936 0.93968 0.92020 0.95631 1.21282 0.98559 0.92353 1.01993 1.30693 1.16958 1.14743 1.12256 1.04456 0.75371 0.74904 0.73099 1.93557 1.71170 1.85979 1.45647 1.93513 1.71235 1.86344 1.46281 1.57656 1.69274 1.42037 1.13913 1.21699 0.95217 0.98842 0.84650 1.21953 0.95074 1.02801 0.96402 1.20928 0.86829 1.03031 0.97362 0.83862 1.23699 0.92658 0.74730 0.75952 1.90740 1.63170 1.44842 1.44745 1.84495 1.31825 1.61432 1.54683 1.22124 0.95863 0.99350 0.94937 0.91358 1.22122 0.99051 1.00901 0.92637 1.22542 0.93864 1.00570 0.98738 1.22330 0.99944 1.00056 0.95383 1.21459 0.91493 0.99721 0.83179 0.86731 0.92615 0.98161 0.98248 0.91557 0.91507 0.84348 0.84735 0.88685 0.87734 0.86450 0.92007 0.71377 0.91718 0.89351 0.92288 0.89439 0.92980 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.16 5.46 84.65 0.46 0.63 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.74 4.97 29.85 0.15 1.89 16 10 C -0.10 -4.33 5.16 30.59 0.16 -4.17 16 11 C -0.62 -19.88 6.03 71.98 0.43 -19.45 16 12 S 2.63 76.44 4.92 -56.49 -0.28 76.17 16 13 O -0.97 -32.54 15.07 -127.65 -1.92 -34.46 16 14 O -0.98 -33.17 16.69 -127.65 -2.13 -35.30 16 15 N -0.99 -20.03 3.18 -490.01 -1.56 -21.59 16 16 C 0.12 1.70 6.34 86.00 0.55 2.24 16 17 C -0.12 -1.44 5.22 30.77 0.16 -1.28 16 18 C -0.06 -0.78 2.44 -11.74 -0.03 -0.80 16 19 H 0.14 0.94 8.00 -2.39 -0.02 0.92 16 20 C 0.49 7.59 7.50 71.23 0.53 8.13 16 21 O -0.54 -12.78 15.38 21.96 0.34 -12.45 16 22 O -0.51 -5.16 13.39 -51.43 -0.69 -5.85 16 23 C -0.10 -1.76 1.44 -10.41 -0.02 -1.78 16 24 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 25 C -0.11 -1.80 5.77 31.45 0.18 -1.62 16 26 C -0.12 -2.13 6.88 32.15 0.22 -1.90 16 27 C -0.14 -2.93 4.89 31.03 0.15 -2.78 16 28 C 0.15 2.58 2.83 45.80 0.13 2.71 16 29 H 0.11 1.39 8.00 -2.39 -0.02 1.37 16 30 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.14 4.04 8.14 -2.39 -0.02 4.02 16 36 H 0.13 4.08 7.11 -2.39 -0.02 4.06 16 37 H 0.09 1.50 7.08 -2.39 -0.02 1.48 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.42 1.40 9.10 -74.05 -0.67 0.72 16 42 H 0.06 1.33 7.15 -2.39 -0.02 1.31 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.05 1.33 5.15 -2.39 -0.01 1.32 16 47 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 Total: -1.00 -79.55 380.29 -0.31 -79.86 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.30 Total: 13.55 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 3.32 Total: -50.08 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -1.27 Total: -78.13 kcal Atomic # 8 Polarization: -83.66 SS G_CDS: -4.40 Total: -88.06 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 76.44 SS G_CDS: -0.28 Total: 76.17 kcal Total: -79.55 -0.31 -79.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.232 kcal (2) G-P(sol) polarization free energy of solvation -79.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds