Wall clock time and date at job start Wed Apr 1 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99763 * 2 1 4 4 H 1.48496 * 109.46669 * 90.00240 * 3 2 1 5 5 H 1.48501 * 109.46759 * 210.00022 * 3 2 1 6 6 H 1.48494 * 109.47372 * 330.00312 * 3 2 1 7 7 C 1.37873 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47174 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47088 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47257 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54370 * 291.62596 * 12 11 10 14 14 O 1.42105 * 110.54399 * 68.37485 * 12 11 10 15 15 N 1.65594 * 104.45341 * 179.97438 * 12 11 10 16 16 C 1.47915 * 122.27496 * 263.54670 * 15 12 11 17 17 C 1.52700 * 111.05605 * 127.88921 * 16 15 12 18 18 C 1.53855 * 111.63821 * 48.40973 * 17 16 15 19 19 H 1.09003 * 109.90386 * 183.40858 * 18 17 16 20 20 C 1.50697 * 109.90207 * 62.34776 * 18 17 16 21 21 O 1.20824 * 120.00218 * 335.45673 * 20 18 17 22 22 O 1.34227 * 119.99636 * 155.45734 * 20 18 17 23 23 C 1.51328 * 107.22717 * 302.83858 * 18 17 16 24 24 H 1.09003 * 109.59715 * 307.88956 * 23 18 17 25 25 C 1.52202 * 117.80028 * 181.71508 * 23 18 17 26 26 C 1.55064 * 105.12863 * 212.11348 * 25 23 18 27 27 C 1.55465 * 106.31736 * 3.92054 * 26 25 23 28 28 C 1.45522 * 122.26977 * 83.25191 * 15 12 11 29 29 H 1.08994 * 110.34814 * 120.84358 * 28 15 12 30 30 H 0.96996 * 119.99995 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47604 * 300.01272 * 9 7 2 32 32 H 1.09003 * 109.46648 * 60.00868 * 9 7 2 33 33 H 1.09002 * 109.47085 * 300.00630 * 10 9 7 34 34 H 1.09003 * 109.46803 * 60.00744 * 10 9 7 35 35 H 1.09006 * 109.47235 * 300.00580 * 11 10 9 36 36 H 1.08995 * 109.47117 * 60.00238 * 11 10 9 37 37 H 1.09005 * 109.15937 * 248.29590 * 16 15 12 38 38 H 1.08999 * 109.15696 * 7.53136 * 16 15 12 39 39 H 1.09004 * 109.04451 * 168.96895 * 17 16 15 40 40 H 1.09006 * 109.04386 * 287.92323 * 17 16 15 41 41 H 0.96699 * 117.00057 * 179.97438 * 22 20 18 42 42 H 1.08995 * 110.31463 * 331.02949 * 25 23 18 43 43 H 1.09002 * 110.31373 * 93.10061 * 25 23 18 44 44 H 1.09000 * 110.08556 * 123.13447 * 26 25 23 45 45 H 1.08999 * 110.08565 * 244.64637 * 26 25 23 46 46 H 1.09004 * 110.74574 * 142.41537 * 27 26 25 47 47 H 1.09000 * 110.74422 * 265.76285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 16 2.6592 -6.3658 -0.0004 13 8 3.3569 -6.4261 -1.2369 14 8 3.3551 -6.4262 1.2371 15 7 1.7089 -7.7219 -0.0005 16 6 1.3703 -8.4492 1.2422 17 6 -0.1380 -8.6536 1.3647 18 6 -0.7428 -9.2084 0.0633 19 1 -1.8256 -9.2863 0.1611 20 6 -0.1563 -10.5634 -0.2380 21 8 0.9291 -10.8630 0.2002 22 8 -0.8397 -11.4376 -0.9933 23 6 -0.3940 -8.2366 -1.0430 24 1 -0.6897 -7.2289 -0.7511 25 6 -0.9144 -8.5364 -2.4415 26 6 0.1665 -7.9794 -3.4036 27 6 1.3266 -7.4643 -2.5060 28 6 1.1451 -8.2755 -1.2225 29 1 1.4845 -9.3014 -1.3657 30 1 -0.4850 -0.8400 -0.0004 31 1 0.6246 -2.5571 0.8895 32 1 0.6243 -2.5567 -0.8904 33 1 2.8721 -3.6042 -0.8905 34 1 2.8719 -3.6043 0.8896 35 1 0.8533 -5.0450 0.8886 36 1 0.8541 -5.0445 -0.8914 37 1 1.8636 -9.4212 1.2336 38 1 1.7238 -7.8763 2.0995 39 1 -0.3374 -9.3533 2.1763 40 1 -0.6088 -7.6979 1.5955 41 1 -0.4227 -12.2940 -1.1597 42 1 -1.0272 -9.6115 -2.5808 43 1 -1.8665 -8.0323 -2.6071 44 1 0.5254 -8.7707 -4.0618 45 1 -0.2439 -7.1598 -3.9935 46 1 2.2926 -7.6730 -2.9659 47 1 1.2155 -6.3987 -2.3053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:32 Heat of formation + Delta-G solvation = -181.304684 kcal Electronic energy + Delta-G solvation = -30368.889835 eV Core-core repulsion = 26256.810679 eV Total energy + Delta-G solvation = -4112.079157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.58396 -39.24292 -37.11785 -36.55712 -35.77997 -35.25623 -34.92215 -33.43492 -32.30108 -29.36263 -28.08699 -27.50113 -25.66614 -23.64193 -23.08948 -21.81885 -21.44291 -20.69440 -19.94761 -18.86672 -18.39237 -17.37808 -16.98136 -16.84395 -16.36494 -16.24972 -15.79063 -15.21786 -14.82594 -14.45667 -14.37572 -14.21081 -14.04769 -13.76803 -13.72731 -13.32375 -13.10853 -12.63758 -12.33128 -12.20696 -12.06319 -12.04828 -11.98503 -11.87589 -11.84636 -11.58125 -11.45285 -11.32003 -11.09322 -11.02803 -10.96784 -10.81837 -10.71830 -10.59704 -10.37806 -10.14642 -10.10651 -9.77747 -8.96178 -8.57678 -8.37970 -6.42162 -4.11935 0.38064 1.84933 2.63327 2.69252 3.42419 3.45818 3.61732 3.84522 3.97363 4.09596 4.26116 4.34042 4.50706 4.52942 4.62747 4.71776 4.82879 4.96891 4.99100 5.05032 5.08493 5.14942 5.19113 5.26229 5.35806 5.39509 5.45313 5.48240 5.51342 5.69214 5.73467 5.79187 5.83610 5.93725 5.96279 6.01318 6.13556 6.16885 6.28016 6.31285 6.47947 6.70117 7.24795 7.36969 7.55564 8.12238 8.40532 8.81946 9.60263 10.98649 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002974 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.028005 B = 9413.148744 C = 9772.692830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.607 4.607 8 H 0.052 0.948 9 C 0.019 3.981 10 C -0.097 4.097 11 C -0.616 4.616 12 S 2.601 3.399 13 O -0.953 6.953 14 O -0.959 6.959 15 N -0.993 5.993 16 C 0.113 3.887 17 C -0.121 4.121 18 C -0.066 4.066 19 H 0.109 0.891 20 C 0.486 3.514 21 O -0.505 6.505 22 O -0.516 6.516 23 C -0.112 4.112 24 H 0.099 0.901 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.135 4.135 28 C 0.142 3.858 29 H 0.085 0.915 30 H 0.268 0.732 31 H 0.011 0.989 32 H 0.011 0.989 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.408 0.592 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 -24.369 -2.654 25.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.188 4.188 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.645 4.645 8 H 0.070 0.930 9 C -0.020 4.020 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.698 3.302 13 O -0.943 6.943 14 O -0.950 6.950 15 N -0.829 5.829 16 C -0.011 4.011 17 C -0.160 4.160 18 C -0.085 4.085 19 H 0.128 0.872 20 C 0.328 3.672 21 O -0.393 6.393 22 O -0.328 6.328 23 C -0.132 4.132 24 H 0.117 0.883 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.173 4.173 28 C 0.035 3.965 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.267 0.733 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.114 0.886 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.329 -22.438 -2.431 22.980 hybrid contribution -0.365 -2.062 -0.018 2.094 sum -4.694 -24.500 -2.449 25.065 Atomic orbital electron populations 1.70770 1.06884 1.30546 1.46659 1.25882 0.96530 1.02806 0.93573 0.83508 0.74737 0.74936 0.76863 1.21352 1.21338 1.20932 1.22099 0.94566 0.91874 1.55964 0.92973 1.19175 0.94153 0.92265 0.96374 1.21347 0.99064 0.91153 1.02124 1.30734 1.16651 1.16352 1.10933 1.05389 0.75782 0.74767 0.74244 1.93578 1.70225 1.85621 1.44910 1.93554 1.70245 1.85852 1.45328 1.57830 1.69687 1.43178 1.12155 1.21655 0.94681 0.99342 0.85445 1.21911 0.96704 1.02287 0.95096 1.20784 1.02227 0.87955 0.97530 0.87248 1.23486 0.83118 0.86516 0.74082 1.90693 1.21292 1.77776 1.49498 1.84573 1.52613 1.29465 1.66135 1.21939 0.97303 0.99782 0.94185 0.88321 1.21962 0.98975 1.02059 0.92890 1.22532 0.94748 1.00994 0.97620 1.22603 1.00642 0.99661 0.94356 1.21529 0.91596 0.98990 0.84405 0.89673 0.92153 0.97084 0.97066 0.91467 0.91505 0.85565 0.85611 0.88586 0.88977 0.89865 0.89668 0.73343 0.90666 0.90659 0.91216 0.90729 0.88600 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.70 13.65 55.43 0.76 -26.94 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.37 29.90 -169.99 -5.08 20.28 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.61 -17.34 9.11 -34.44 -0.31 -17.65 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.47 4.28 -27.88 -0.12 0.35 16 10 C -0.10 -2.01 5.16 -26.73 -0.14 -2.15 16 11 C -0.62 -9.60 6.05 37.16 0.22 -9.37 16 12 S 2.60 40.73 4.92 -107.50 -0.53 40.20 16 13 O -0.95 -16.93 15.07 -57.54 -0.87 -17.80 16 14 O -0.96 -17.67 16.69 -57.54 -0.96 -18.63 16 15 N -0.99 -12.38 3.18 -105.99 -0.34 -12.72 16 16 C 0.11 1.24 5.80 -3.42 -0.02 1.22 16 17 C -0.12 -0.96 5.27 -26.44 -0.14 -1.10 16 18 C -0.07 -0.49 2.98 -92.17 -0.27 -0.77 16 19 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 20 C 0.49 4.06 5.80 36.00 0.21 4.26 16 21 O -0.51 -5.61 13.40 -18.75 -0.25 -5.86 16 22 O -0.52 -3.08 12.42 -39.25 -0.49 -3.57 16 23 C -0.11 -0.95 2.04 -90.81 -0.19 -1.13 16 24 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 25 C -0.12 -0.90 6.44 -26.05 -0.17 -1.06 16 26 C -0.12 -1.02 6.88 -24.33 -0.17 -1.19 16 27 C -0.13 -1.51 4.65 -25.46 -0.12 -1.63 16 28 C 0.14 1.57 2.69 -67.44 -0.18 1.39 16 29 H 0.09 0.99 6.04 -51.93 -0.31 0.67 16 30 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 31 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 32 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 36 H 0.13 1.73 6.73 -51.93 -0.35 1.38 16 37 H 0.10 1.15 5.86 -51.93 -0.30 0.84 16 38 H 0.09 1.02 7.08 -51.93 -0.37 0.65 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.41 0.94 9.10 45.56 0.41 1.35 16 42 H 0.07 0.52 6.68 -51.93 -0.35 0.17 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 1.19 7.60 -51.93 -0.39 0.79 16 47 H 0.07 0.87 5.68 -51.93 -0.30 0.57 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -36.78 370.30 -10.18 -46.96 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.51 Total: 0.95 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -1.49 Total: -28.47 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.42 Total: -39.66 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.57 Total: -45.85 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.08 Total: 20.28 kcal Atomic # 16 Polarization: 40.73 SS G_CDS: -0.53 Total: 40.20 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.78 -10.18 -46.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.343 kcal (2) G-P(sol) polarization free energy of solvation -36.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds