Wall clock time and date at job start Wed Apr 1 2020 03:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99763 * 2 1 4 4 H 1.48496 * 109.46669 * 90.00240 * 3 2 1 5 5 H 1.48501 * 109.46759 * 210.00022 * 3 2 1 6 6 H 1.48494 * 109.47372 * 330.00312 * 3 2 1 7 7 C 1.37873 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00075 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47174 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47088 * 180.02562 * 10 9 7 12 12 S 1.81396 * 109.47257 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54370 * 291.62596 * 12 11 10 14 14 O 1.42105 * 110.54399 * 68.37485 * 12 11 10 15 15 N 1.65594 * 104.45341 * 179.97438 * 12 11 10 16 16 C 1.47915 * 122.27496 * 263.54670 * 15 12 11 17 17 C 1.52700 * 111.05605 * 127.88921 * 16 15 12 18 18 C 1.53855 * 111.63821 * 48.40973 * 17 16 15 19 19 H 1.09003 * 109.90386 * 183.40858 * 18 17 16 20 20 C 1.50697 * 109.90207 * 62.34776 * 18 17 16 21 21 O 1.20824 * 120.00218 * 335.45673 * 20 18 17 22 22 O 1.34227 * 119.99636 * 155.45734 * 20 18 17 23 23 C 1.51328 * 107.22717 * 302.83858 * 18 17 16 24 24 H 1.09003 * 109.59715 * 307.88956 * 23 18 17 25 25 C 1.52202 * 117.80028 * 181.71508 * 23 18 17 26 26 C 1.55064 * 105.12863 * 212.11348 * 25 23 18 27 27 C 1.55465 * 106.31736 * 3.92054 * 26 25 23 28 28 C 1.45522 * 122.26977 * 83.25191 * 15 12 11 29 29 H 1.08994 * 110.34814 * 120.84358 * 28 15 12 30 30 H 0.96996 * 119.99995 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47604 * 300.01272 * 9 7 2 32 32 H 1.09003 * 109.46648 * 60.00868 * 9 7 2 33 33 H 1.09002 * 109.47085 * 300.00630 * 10 9 7 34 34 H 1.09003 * 109.46803 * 60.00744 * 10 9 7 35 35 H 1.09006 * 109.47235 * 300.00580 * 11 10 9 36 36 H 1.08995 * 109.47117 * 60.00238 * 11 10 9 37 37 H 1.09005 * 109.15937 * 248.29590 * 16 15 12 38 38 H 1.08999 * 109.15696 * 7.53136 * 16 15 12 39 39 H 1.09004 * 109.04451 * 168.96895 * 17 16 15 40 40 H 1.09006 * 109.04386 * 287.92323 * 17 16 15 41 41 H 0.96699 * 117.00057 * 179.97438 * 22 20 18 42 42 H 1.08995 * 110.31463 * 331.02949 * 25 23 18 43 43 H 1.09002 * 110.31373 * 93.10061 * 25 23 18 44 44 H 1.09000 * 110.08556 * 123.13447 * 26 25 23 45 45 H 1.08999 * 110.08565 * 244.64637 * 26 25 23 46 46 H 1.09004 * 110.74574 * 142.41537 * 27 26 25 47 47 H 1.09000 * 110.74422 * 265.76285 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6528 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 16 2.6592 -6.3658 -0.0004 13 8 3.3569 -6.4261 -1.2369 14 8 3.3551 -6.4262 1.2371 15 7 1.7089 -7.7219 -0.0005 16 6 1.3703 -8.4492 1.2422 17 6 -0.1380 -8.6536 1.3647 18 6 -0.7428 -9.2084 0.0633 19 1 -1.8256 -9.2863 0.1611 20 6 -0.1563 -10.5634 -0.2380 21 8 0.9291 -10.8630 0.2002 22 8 -0.8397 -11.4376 -0.9933 23 6 -0.3940 -8.2366 -1.0430 24 1 -0.6897 -7.2289 -0.7511 25 6 -0.9144 -8.5364 -2.4415 26 6 0.1665 -7.9794 -3.4036 27 6 1.3266 -7.4643 -2.5060 28 6 1.1451 -8.2755 -1.2225 29 1 1.4845 -9.3014 -1.3657 30 1 -0.4850 -0.8400 -0.0004 31 1 0.6246 -2.5571 0.8895 32 1 0.6243 -2.5567 -0.8904 33 1 2.8721 -3.6042 -0.8905 34 1 2.8719 -3.6043 0.8896 35 1 0.8533 -5.0450 0.8886 36 1 0.8541 -5.0445 -0.8914 37 1 1.8636 -9.4212 1.2336 38 1 1.7238 -7.8763 2.0995 39 1 -0.3374 -9.3533 2.1763 40 1 -0.6088 -7.6979 1.5955 41 1 -0.4227 -12.2940 -1.1597 42 1 -1.0272 -9.6115 -2.5808 43 1 -1.8665 -8.0323 -2.6071 44 1 0.5254 -8.7707 -4.0618 45 1 -0.2439 -7.1598 -3.9935 46 1 2.2926 -7.6730 -2.9659 47 1 1.2155 -6.3987 -2.3053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065360.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:32 Heat of formation + Delta-G solvation = -207.346905 kcal Electronic energy + Delta-G solvation = -30370.019111 eV Core-core repulsion = 26256.810679 eV Total energy + Delta-G solvation = -4113.208432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25501 -39.93767 -38.40510 -37.19358 -37.14841 -36.80870 -36.01722 -34.26402 -34.20695 -30.09114 -29.36500 -28.81211 -26.40555 -25.51226 -24.00596 -22.91486 -22.40448 -21.88623 -20.58719 -20.04571 -19.10142 -18.99581 -18.26708 -17.81104 -17.40008 -17.20667 -16.80301 -16.37269 -15.79019 -15.68616 -15.47756 -15.37334 -15.21989 -14.89817 -14.84887 -14.39952 -13.95071 -13.90011 -13.64174 -13.38095 -13.33844 -13.22177 -13.19466 -13.10394 -12.97323 -12.63411 -12.56132 -12.47061 -12.29325 -12.14292 -11.95227 -11.92849 -11.81755 -11.75062 -11.70954 -11.41539 -11.26960 -11.11457 -10.69957 -10.56697 -9.85624 -8.71715 -6.42685 -0.89203 1.24500 1.51876 1.54675 1.60339 1.78752 2.15935 2.53859 2.70318 3.02270 3.09802 3.12858 3.45167 3.59041 3.61728 3.75135 3.85326 3.89905 4.06354 4.15824 4.23913 4.29166 4.37686 4.42155 4.46660 4.50675 4.54643 4.71990 4.73458 4.77726 4.82752 4.85392 4.87571 5.06136 5.09718 5.11508 5.15577 5.19092 5.24299 5.29756 5.35666 5.45584 5.58127 5.74481 5.94584 6.15377 6.55364 7.06055 7.37703 8.70057 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002974 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.028005 B = 9413.148744 C = 9772.692830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.034 4.034 3 Si 1.116 2.884 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.630 4.630 8 H 0.049 0.951 9 C 0.018 3.982 10 C -0.098 4.098 11 C -0.608 4.608 12 S 2.617 3.383 13 O -0.979 6.979 14 O -0.990 6.990 15 N -0.987 5.987 16 C 0.107 3.893 17 C -0.120 4.120 18 C -0.065 4.065 19 H 0.140 0.860 20 C 0.488 3.512 21 O -0.539 6.539 22 O -0.509 6.509 23 C -0.105 4.105 24 H 0.104 0.896 25 C -0.114 4.114 26 C -0.117 4.117 27 C -0.144 4.144 28 C 0.133 3.867 29 H 0.079 0.921 30 H 0.259 0.741 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.424 0.576 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -25.187 -2.799 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.232 4.232 3 Si 0.938 3.062 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.668 4.668 8 H 0.067 0.933 9 C -0.020 4.020 10 C -0.137 4.137 11 C -0.739 4.739 12 S 2.714 3.286 13 O -0.969 6.969 14 O -0.980 6.980 15 N -0.824 5.824 16 C -0.017 4.017 17 C -0.159 4.159 18 C -0.084 4.084 19 H 0.158 0.842 20 C 0.332 3.668 21 O -0.429 6.429 22 O -0.322 6.322 23 C -0.126 4.126 24 H 0.122 0.878 25 C -0.152 4.152 26 C -0.155 4.155 27 C -0.182 4.182 28 C 0.027 3.973 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.021 0.979 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.285 0.715 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.940 -23.291 -2.585 24.175 hybrid contribution 0.144 -1.928 -0.008 1.933 sum -5.797 -25.219 -2.593 26.007 Atomic orbital electron populations 1.70889 1.07735 1.30084 1.48435 1.27366 0.96676 1.06631 0.92574 0.82943 0.74204 0.71195 0.77908 1.19706 1.19680 1.20467 1.22571 0.94842 0.93698 1.55662 0.93313 1.19101 0.94591 0.92947 0.95343 1.21173 0.98458 0.92242 1.01839 1.30640 1.16633 1.13506 1.13119 1.04656 0.75713 0.75206 0.72978 1.93545 1.71388 1.86189 1.45790 1.93508 1.71491 1.86513 1.46529 1.57545 1.69499 1.41862 1.13534 1.21822 0.97219 0.98263 0.84414 1.21935 0.94131 1.03672 0.96125 1.20854 1.03852 0.87101 0.96586 0.84228 1.23654 0.82545 0.86993 0.73594 1.90695 1.22772 1.78535 1.50942 1.84530 1.52251 1.30247 1.65215 1.21952 0.94710 1.00583 0.95309 0.87769 1.21958 0.99012 1.02720 0.91535 1.22535 0.94014 1.01446 0.97546 1.22646 1.01018 0.99280 0.95254 1.21693 0.93773 0.98268 0.83584 0.90274 0.93168 0.97988 0.97929 0.91839 0.91935 0.83381 0.83603 0.89722 0.89445 0.88266 0.88144 0.71477 0.89827 0.89041 0.90399 0.90214 0.90611 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.99 13.65 21.45 0.29 -56.70 16 2 C -0.03 -1.99 5.46 84.65 0.46 -1.53 16 3 Si 1.12 50.46 29.90 68.60 2.05 52.51 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.63 -36.28 9.11 25.60 0.23 -36.05 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 9 C 0.02 0.94 4.28 29.85 0.13 1.06 16 10 C -0.10 -4.06 5.16 30.59 0.16 -3.90 16 11 C -0.61 -18.55 6.05 71.98 0.44 -18.11 16 12 S 2.62 82.39 4.92 -56.49 -0.28 82.11 16 13 O -0.98 -35.59 15.07 -127.65 -1.92 -37.51 16 14 O -0.99 -36.99 16.69 -127.65 -2.13 -39.12 16 15 N -0.99 -24.07 3.18 -489.24 -1.56 -25.63 16 16 C 0.11 2.26 5.80 86.01 0.50 2.76 16 17 C -0.12 -1.60 5.27 30.78 0.16 -1.44 16 18 C -0.06 -0.77 2.98 -11.80 -0.04 -0.80 16 19 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 20 C 0.49 7.04 5.80 71.23 0.41 7.45 16 21 O -0.54 -11.40 13.40 21.97 0.29 -11.11 16 22 O -0.51 -4.61 12.42 -51.39 -0.64 -5.25 16 23 C -0.11 -1.51 2.04 -10.92 -0.02 -1.53 16 24 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 25 C -0.11 -1.34 6.44 31.04 0.20 -1.14 16 26 C -0.12 -1.77 6.88 32.15 0.22 -1.55 16 27 C -0.14 -3.18 4.65 31.42 0.15 -3.03 16 28 C 0.13 2.82 2.69 45.84 0.12 2.94 16 29 H 0.08 1.79 6.04 -2.39 -0.01 1.78 16 30 H 0.26 15.72 7.22 -92.71 -0.67 15.05 16 31 H 0.00 0.10 8.01 -2.39 -0.02 0.08 16 32 H 0.00 0.13 8.01 -2.39 -0.02 0.11 16 33 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 36 H 0.15 3.85 6.73 -2.39 -0.02 3.83 16 37 H 0.08 2.02 5.86 -2.38 -0.01 2.01 16 38 H 0.09 1.90 7.08 -2.39 -0.02 1.88 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.42 0.91 9.10 -74.06 -0.67 0.24 16 42 H 0.08 0.86 6.68 -2.39 -0.02 0.85 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.08 1.94 7.60 -2.39 -0.02 1.92 16 47 H 0.06 1.49 5.68 -2.39 -0.01 1.48 16 Total: -1.00 -80.21 370.30 -0.35 -80.56 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.41 Total: 15.01 kcal Atomic # 6 Polarization: -58.01 SS G_CDS: 3.12 Total: -54.88 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -1.26 Total: -82.33 kcal Atomic # 8 Polarization: -88.58 SS G_CDS: -4.40 Total: -92.98 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 2.05 Total: 52.51 kcal Atomic # 16 Polarization: 82.39 SS G_CDS: -0.28 Total: 82.11 kcal Total: -80.21 -0.35 -80.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065360.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.788 kcal (2) G-P(sol) polarization free energy of solvation -80.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds