Wall clock time and date at job start Wed Apr 1 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47398 * 270.00240 * 3 2 1 5 5 H 1.48505 * 109.47242 * 30.00046 * 3 2 1 6 6 H 1.48497 * 109.47399 * 150.00109 * 3 2 1 7 7 C 1.37878 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99431 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47247 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47453 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.53642 * 68.37552 * 11 10 9 13 13 O 1.42097 * 110.54125 * 291.63069 * 11 10 9 14 14 N 1.65592 * 104.45045 * 180.02562 * 11 10 9 15 15 C 1.47102 * 120.91064 * 255.56218 * 14 11 10 16 16 C 1.53117 * 109.11649 * 233.39938 * 15 14 11 17 17 C 1.53181 * 109.69340 * 306.15737 * 16 15 14 18 18 H 1.09001 * 109.51792 * 300.79236 * 17 16 15 19 19 C 1.50697 * 109.51605 * 180.61320 * 17 16 15 20 20 O 1.20825 * 120.00255 * 240.29217 * 19 17 16 21 21 O 1.34231 * 119.99902 * 60.30007 * 19 17 16 22 22 C 1.52776 * 109.18121 * 60.70340 * 17 16 15 23 23 H 1.09000 * 109.38873 * 57.70842 * 22 17 16 24 24 C 1.52806 * 110.70287 * 178.32013 * 22 17 16 25 25 C 1.53154 * 109.01680 * 181.05506 * 24 22 17 26 26 C 1.52906 * 109.86925 * 300.44868 * 25 24 22 27 27 C 1.53147 * 109.86352 * 59.04971 * 26 25 24 28 28 C 1.46682 * 120.90753 * 75.58048 * 14 11 10 29 29 H 1.09000 * 109.61230 * 244.97489 * 28 14 11 30 30 H 0.96997 * 119.99709 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47190 * 60.00461 * 9 7 2 32 32 H 1.08997 * 109.47643 * 300.00243 * 9 7 2 33 33 H 1.09005 * 109.46876 * 60.00226 * 10 9 7 34 34 H 1.08997 * 109.47059 * 300.00677 * 10 9 7 35 35 H 1.08998 * 109.52625 * 353.28419 * 15 14 11 36 36 H 1.08993 * 109.53623 * 113.50059 * 15 14 11 37 37 H 1.09002 * 109.43213 * 186.09341 * 16 15 14 38 38 H 1.08990 * 109.43910 * 66.22772 * 16 15 14 39 39 H 0.96708 * 116.99904 * 179.97438 * 21 19 17 40 40 H 1.08999 * 109.53988 * 300.91457 * 24 22 17 41 41 H 1.08992 * 109.54860 * 61.10152 * 24 22 17 42 42 H 1.09003 * 109.40514 * 60.57172 * 25 24 22 43 43 H 1.09002 * 109.40110 * 180.40194 * 25 24 22 44 44 H 1.09001 * 109.40260 * 179.17385 * 26 25 24 45 45 H 1.09005 * 109.40446 * 298.92716 * 26 25 24 46 46 H 1.08996 * 109.54648 * 60.28965 * 27 26 25 47 47 H 1.09000 * 109.54376 * 180.47459 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0011 12 8 0.6628 -5.4194 -1.2374 13 8 0.6655 -5.4199 1.2366 14 7 2.5202 -6.3927 -0.0018 15 6 2.8384 -7.1466 -1.2243 16 6 2.7654 -8.6459 -0.9220 17 6 3.6594 -8.9748 0.2776 18 1 4.6875 -8.6894 0.0547 19 6 3.5963 -10.4533 0.5621 20 8 3.1980 -10.8460 1.6331 21 8 3.9827 -11.3341 -0.3743 22 6 3.1673 -8.1987 1.4980 23 1 2.1259 -8.4540 1.6935 24 6 4.0110 -8.5334 2.7273 25 6 3.4694 -7.7566 3.9309 26 6 3.5320 -6.2547 3.6510 27 6 2.7069 -5.9229 2.4042 28 6 3.2785 -6.6966 1.2165 29 1 4.3254 -6.4298 1.0720 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8725 -3.6048 0.8878 34 1 2.8712 -3.6039 -0.8922 35 1 2.1190 -6.8967 -2.0040 36 1 3.8437 -6.8909 -1.5589 37 1 3.1047 -9.2082 -1.7921 38 1 1.7357 -8.9200 -0.6929 39 1 3.9246 -12.2719 -0.1455 40 1 3.9543 -9.6032 2.9281 41 1 5.0480 -8.2509 2.5459 42 1 2.4352 -8.0480 4.1144 43 1 4.0715 -7.9854 4.8103 44 1 3.1314 -5.7100 4.5060 45 1 4.5686 -5.9594 3.4885 46 1 1.6683 -6.2105 2.5670 47 1 2.7620 -4.8527 2.2047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:10 Heat of formation + Delta-G solvation = -176.876403 kcal Electronic energy + Delta-G solvation = -30412.710666 eV Core-core repulsion = 26300.823534 eV Total energy + Delta-G solvation = -4111.887132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15698 -39.36545 -36.92818 -36.46801 -35.73029 -35.46178 -33.92299 -33.53150 -31.19993 -30.45358 -29.63714 -26.22989 -25.58600 -23.16363 -23.06134 -22.27806 -21.35419 -20.35901 -20.06318 -18.50376 -18.28128 -17.23721 -16.89876 -16.41745 -16.33458 -15.84242 -15.51079 -15.10875 -14.79428 -14.58870 -14.55920 -14.29150 -13.80585 -13.47081 -13.33163 -13.22710 -13.00233 -12.57620 -12.47020 -12.32092 -12.00633 -11.96620 -11.77582 -11.64610 -11.56752 -11.41005 -11.27735 -11.11887 -11.08109 -10.98631 -10.85618 -10.73205 -10.43931 -10.39713 -10.22750 -10.07095 -9.84518 -9.76680 -9.32117 -8.79767 -8.51545 -6.13734 -4.19374 0.73145 1.92003 2.72510 2.96842 3.25054 3.31460 3.34020 4.16411 4.24283 4.35849 4.36655 4.52616 4.62374 4.73432 4.79119 4.90593 4.97514 5.06867 5.15865 5.21390 5.26974 5.34690 5.36821 5.43439 5.48883 5.52949 5.56429 5.61558 5.71149 5.75766 5.84669 5.92256 5.98900 6.08139 6.09251 6.15297 6.21730 6.28142 6.40029 6.49272 6.64548 6.72142 7.28480 7.34190 7.62188 7.79258 8.16091 8.84027 9.45486 10.97278 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.003166 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.206481 B = 8840.569884 C = 9562.492055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.029 3.971 10 C -0.591 4.591 11 S 2.588 3.412 12 O -0.967 6.967 13 O -0.958 6.958 14 N -1.006 6.006 15 C 0.118 3.882 16 C -0.123 4.123 17 C -0.073 4.073 18 H 0.111 0.889 19 C 0.483 3.517 20 O -0.507 6.507 21 O -0.517 6.517 22 C -0.079 4.079 23 H 0.087 0.913 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.169 4.169 28 C 0.165 3.835 29 H 0.076 0.924 30 H 0.265 0.735 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.408 0.592 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.125 0.875 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.124 -20.701 1.389 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.724 4.724 11 S 2.689 3.311 12 O -0.958 6.958 13 O -0.948 6.948 14 N -0.842 5.842 15 C -0.007 4.007 16 C -0.162 4.162 17 C -0.092 4.092 18 H 0.129 0.871 19 C 0.326 3.674 20 O -0.395 6.395 21 O -0.329 6.329 22 C -0.100 4.100 23 H 0.106 0.894 24 C -0.163 4.163 25 C -0.155 4.155 26 C -0.151 4.151 27 C -0.208 4.208 28 C 0.059 3.941 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.266 0.734 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.143 0.857 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.921 -20.469 1.556 22.800 hybrid contribution 1.111 0.608 0.084 1.269 sum 11.032 -19.862 1.640 22.779 Atomic orbital electron populations 1.69956 1.06111 1.27208 1.49544 1.25068 0.94970 0.99533 0.94899 0.86475 0.79724 0.82876 0.78246 1.20462 1.20996 1.19747 1.20995 0.93048 0.89746 1.52165 0.92055 1.18953 0.92659 0.90552 0.98826 1.30572 1.13694 1.18023 1.10088 1.05753 0.74907 0.76423 0.74036 1.93502 1.71404 1.85325 1.45549 1.93521 1.72319 1.84822 1.44137 1.58075 1.56749 1.53554 1.15801 1.21419 1.02528 0.89844 0.86913 1.21897 1.00143 0.97422 0.96744 1.21071 1.03274 0.86394 0.98471 0.87101 1.23579 0.72725 0.89932 0.81208 1.90668 1.42899 1.80640 1.25260 1.84553 1.79601 1.21865 1.46866 1.21374 1.01893 0.94020 0.92676 0.89432 1.21838 0.98288 1.02236 0.93923 1.21523 1.01681 0.94904 0.97404 1.21486 0.99881 0.96114 0.97645 1.22736 1.04073 1.00073 0.93870 1.20934 0.95742 0.94052 0.83378 0.90618 0.92518 0.94957 0.94830 0.86141 0.86225 0.87622 0.91083 0.89312 0.90757 0.73356 0.89343 0.92304 0.91626 0.92017 0.91203 0.92113 0.85740 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 10 C -0.59 -11.14 5.90 37.16 0.22 -10.92 16 11 S 2.59 45.70 4.86 -107.50 -0.52 45.18 16 12 O -0.97 -19.57 16.31 -57.54 -0.94 -20.51 16 13 O -0.96 -18.81 13.88 -57.54 -0.80 -19.61 16 14 N -1.01 -13.17 3.20 -106.63 -0.34 -13.51 16 15 C 0.12 1.25 6.48 -3.65 -0.02 1.23 16 16 C -0.12 -1.12 5.29 -26.58 -0.14 -1.26 16 17 C -0.07 -0.65 2.20 -91.79 -0.20 -0.86 16 18 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 19 C 0.48 4.51 7.36 36.00 0.26 4.78 16 20 O -0.51 -6.09 14.38 -18.75 -0.27 -6.36 16 21 O -0.52 -3.52 13.33 -39.26 -0.52 -4.05 16 22 C -0.08 -0.86 1.20 -90.72 -0.11 -0.97 16 23 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 24 C -0.13 -1.24 4.96 -26.75 -0.13 -1.37 16 25 C -0.12 -1.19 5.91 -26.70 -0.16 -1.35 16 26 C -0.11 -1.23 5.90 -26.70 -0.16 -1.38 16 27 C -0.17 -2.25 3.69 -26.74 -0.10 -2.35 16 28 C 0.17 1.92 2.66 -67.80 -0.18 1.74 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.12 2.04 6.26 -51.92 -0.32 1.72 16 34 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 35 H 0.11 1.22 6.60 -51.93 -0.34 0.88 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.41 1.17 9.10 45.56 0.41 1.59 16 40 H 0.09 0.97 5.47 -51.93 -0.28 0.68 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.12 1.94 5.77 -51.93 -0.30 1.64 16 47 H 0.07 1.01 5.35 -51.93 -0.28 0.73 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -34.96 369.75 -9.95 -44.91 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.57 Total: 3.06 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -1.27 Total: -25.13 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.39 Total: -39.08 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -2.53 Total: -50.52 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 45.70 SS G_CDS: -0.52 Total: 45.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.96 -9.95 -44.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.966 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds