Wall clock time and date at job start Wed Apr 1 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47398 * 270.00240 * 3 2 1 5 5 H 1.48505 * 109.47242 * 30.00046 * 3 2 1 6 6 H 1.48497 * 109.47399 * 150.00109 * 3 2 1 7 7 C 1.37878 * 119.99619 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99431 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00173 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47247 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47453 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.53642 * 68.37552 * 11 10 9 13 13 O 1.42097 * 110.54125 * 291.63069 * 11 10 9 14 14 N 1.65592 * 104.45045 * 180.02562 * 11 10 9 15 15 C 1.47102 * 120.91064 * 255.56218 * 14 11 10 16 16 C 1.53117 * 109.11649 * 233.39938 * 15 14 11 17 17 C 1.53181 * 109.69340 * 306.15737 * 16 15 14 18 18 H 1.09001 * 109.51792 * 300.79236 * 17 16 15 19 19 C 1.50697 * 109.51605 * 180.61320 * 17 16 15 20 20 O 1.20825 * 120.00255 * 240.29217 * 19 17 16 21 21 O 1.34231 * 119.99902 * 60.30007 * 19 17 16 22 22 C 1.52776 * 109.18121 * 60.70340 * 17 16 15 23 23 H 1.09000 * 109.38873 * 57.70842 * 22 17 16 24 24 C 1.52806 * 110.70287 * 178.32013 * 22 17 16 25 25 C 1.53154 * 109.01680 * 181.05506 * 24 22 17 26 26 C 1.52906 * 109.86925 * 300.44868 * 25 24 22 27 27 C 1.53147 * 109.86352 * 59.04971 * 26 25 24 28 28 C 1.46682 * 120.90753 * 75.58048 * 14 11 10 29 29 H 1.09000 * 109.61230 * 244.97489 * 28 14 11 30 30 H 0.96997 * 119.99709 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47190 * 60.00461 * 9 7 2 32 32 H 1.08997 * 109.47643 * 300.00243 * 9 7 2 33 33 H 1.09005 * 109.46876 * 60.00226 * 10 9 7 34 34 H 1.08997 * 109.47059 * 300.00677 * 10 9 7 35 35 H 1.08998 * 109.52625 * 353.28419 * 15 14 11 36 36 H 1.08993 * 109.53623 * 113.50059 * 15 14 11 37 37 H 1.09002 * 109.43213 * 186.09341 * 16 15 14 38 38 H 1.08990 * 109.43910 * 66.22772 * 16 15 14 39 39 H 0.96708 * 116.99904 * 179.97438 * 21 19 17 40 40 H 1.08999 * 109.53988 * 300.91457 * 24 22 17 41 41 H 1.08992 * 109.54860 * 61.10152 * 24 22 17 42 42 H 1.09003 * 109.40514 * 60.57172 * 25 24 22 43 43 H 1.09002 * 109.40110 * 180.40194 * 25 24 22 44 44 H 1.09001 * 109.40260 * 179.17385 * 26 25 24 45 45 H 1.09005 * 109.40446 * 298.92716 * 26 25 24 46 46 H 1.08996 * 109.54648 * 60.28965 * 27 26 25 47 47 H 1.09000 * 109.54376 * 180.47459 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0011 12 8 0.6628 -5.4194 -1.2374 13 8 0.6655 -5.4199 1.2366 14 7 2.5202 -6.3927 -0.0018 15 6 2.8384 -7.1466 -1.2243 16 6 2.7654 -8.6459 -0.9220 17 6 3.6594 -8.9748 0.2776 18 1 4.6875 -8.6894 0.0547 19 6 3.5963 -10.4533 0.5621 20 8 3.1980 -10.8460 1.6331 21 8 3.9827 -11.3341 -0.3743 22 6 3.1673 -8.1987 1.4980 23 1 2.1259 -8.4540 1.6935 24 6 4.0110 -8.5334 2.7273 25 6 3.4694 -7.7566 3.9309 26 6 3.5320 -6.2547 3.6510 27 6 2.7069 -5.9229 2.4042 28 6 3.2785 -6.6966 1.2165 29 1 4.3254 -6.4298 1.0720 30 1 -0.4849 0.8400 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8896 33 1 2.8725 -3.6048 0.8878 34 1 2.8712 -3.6039 -0.8922 35 1 2.1190 -6.8967 -2.0040 36 1 3.8437 -6.8909 -1.5589 37 1 3.1047 -9.2082 -1.7921 38 1 1.7357 -8.9200 -0.6929 39 1 3.9246 -12.2719 -0.1455 40 1 3.9543 -9.6032 2.9281 41 1 5.0480 -8.2509 2.5459 42 1 2.4352 -8.0480 4.1144 43 1 4.0715 -7.9854 4.8103 44 1 3.1314 -5.7100 4.5060 45 1 4.5686 -5.9594 3.4885 46 1 1.6683 -6.2105 2.5670 47 1 2.7620 -4.8527 2.2047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:10 Heat of formation + Delta-G solvation = -201.880932 kcal Electronic energy + Delta-G solvation = -30413.794944 eV Core-core repulsion = 26300.823534 eV Total energy + Delta-G solvation = -4112.971410 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.91628 -40.18804 -38.35178 -37.16326 -36.97267 -36.64143 -35.89526 -34.44946 -33.13458 -31.29484 -30.54056 -27.64454 -26.98864 -24.13543 -23.95761 -23.46758 -22.78261 -21.16392 -20.92094 -19.80961 -18.97510 -18.86994 -17.99756 -17.60898 -17.46381 -17.07061 -16.66936 -16.52378 -16.03634 -15.90378 -15.53472 -15.15337 -15.05951 -14.60697 -14.39921 -14.29733 -14.14491 -13.84302 -13.72757 -13.49737 -13.32744 -13.12693 -12.95413 -12.91361 -12.80769 -12.72529 -12.67903 -12.34083 -12.20741 -12.11974 -12.10532 -11.94385 -11.72409 -11.71178 -11.51605 -11.22191 -11.05286 -11.02041 -10.77163 -10.64441 -9.88700 -8.25919 -6.40160 -0.70177 1.23524 1.41194 1.43063 1.54185 1.72468 2.14166 2.38288 2.83873 3.07506 3.20653 3.32984 3.60991 3.71954 3.80589 3.97434 4.04728 4.09172 4.10548 4.19882 4.27194 4.40821 4.46492 4.53258 4.57017 4.65993 4.70988 4.71664 4.77459 4.84816 4.91309 5.00690 5.09841 5.16392 5.24439 5.25607 5.27008 5.29250 5.30346 5.41618 5.43668 5.63408 5.68663 5.73439 5.78087 6.06061 6.73602 7.05650 7.30188 8.86397 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018963 B = 0.003166 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.206481 B = 8840.569884 C = 9562.492055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.588 4.588 11 S 2.605 3.395 12 O -0.998 6.998 13 O -0.986 6.986 14 N -0.996 5.996 15 C 0.109 3.891 16 C -0.119 4.119 17 C -0.071 4.071 18 H 0.145 0.855 19 C 0.489 3.511 20 O -0.540 6.540 21 O -0.509 6.509 22 C -0.077 4.077 23 H 0.054 0.946 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.109 4.109 27 C -0.177 4.177 28 C 0.164 3.836 29 H 0.113 0.887 30 H 0.267 0.733 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.052 0.948 39 H 0.426 0.574 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.208 -21.482 0.787 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.016 4.016 10 C -0.720 4.720 11 S 2.705 3.295 12 O -0.988 6.988 13 O -0.976 6.976 14 N -0.835 5.835 15 C -0.015 4.015 16 C -0.158 4.158 17 C -0.090 4.090 18 H 0.162 0.838 19 C 0.333 3.667 20 O -0.431 6.431 21 O -0.322 6.322 22 C -0.098 4.098 23 H 0.073 0.927 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.147 4.147 27 C -0.216 4.216 28 C 0.058 3.942 29 H 0.131 0.869 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.071 0.929 39 H 0.287 0.713 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.110 0.890 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.015 -21.265 0.935 25.485 hybrid contribution -0.194 0.710 0.266 0.783 sum 13.820 -20.555 1.201 24.798 Atomic orbital electron populations 1.70110 1.08129 1.28317 1.50914 1.26134 0.95844 1.03933 0.94376 0.85311 0.78690 0.77589 0.78673 1.19545 1.20941 1.17984 1.21510 0.93999 0.90686 1.51449 0.90501 1.18787 0.93538 0.93158 0.96094 1.30470 1.12722 1.16560 1.12224 1.04923 0.75245 0.76525 0.72779 1.93455 1.72771 1.85797 1.46805 1.93517 1.73764 1.85152 1.45118 1.57711 1.56122 1.52074 1.17597 1.21770 1.04231 0.90302 0.85243 1.21882 0.99266 0.96596 0.98034 1.21074 1.04801 0.86100 0.97023 0.83774 1.23563 0.71941 0.90362 0.80869 1.90674 1.44468 1.81195 1.26752 1.84499 1.78795 1.23120 1.45823 1.21298 1.00521 0.93629 0.94343 0.92737 1.21789 0.99308 1.01563 0.92964 1.21520 1.00916 0.94501 0.98533 1.21473 1.00580 0.96490 0.96146 1.22702 1.03040 0.99606 0.96228 1.21171 0.96873 0.94351 0.81755 0.86889 0.92417 0.97881 0.97717 0.84069 0.83995 0.88998 0.87135 0.86469 0.92938 0.71251 0.90204 0.89718 0.93703 0.90307 0.91731 0.89730 0.88986 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.42 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.21 4.98 29.85 0.15 1.36 16 10 C -0.59 -22.19 5.90 71.98 0.42 -21.76 16 11 S 2.61 94.43 4.86 -56.49 -0.27 94.15 16 12 O -1.00 -41.79 16.31 -127.65 -2.08 -43.87 16 13 O -0.99 -41.05 13.88 -127.65 -1.77 -42.82 16 14 N -1.00 -24.79 3.20 -491.26 -1.57 -26.36 16 15 C 0.11 2.02 6.48 86.30 0.56 2.57 16 16 C -0.12 -1.86 5.29 30.69 0.16 -1.70 16 17 C -0.07 -1.05 2.20 -11.55 -0.03 -1.07 16 18 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 19 C 0.49 7.92 7.36 71.24 0.52 8.44 16 20 O -0.54 -12.34 14.38 21.97 0.32 -12.02 16 21 O -0.51 -5.25 13.33 -51.43 -0.69 -5.94 16 22 C -0.08 -1.55 1.20 -10.86 -0.01 -1.56 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 C -0.12 -2.07 4.96 30.58 0.15 -1.92 16 25 C -0.12 -2.24 5.91 30.61 0.18 -2.06 16 26 C -0.11 -2.21 5.90 30.61 0.18 -2.03 16 27 C -0.18 -4.67 3.69 30.59 0.11 -4.55 16 28 C 0.16 3.46 2.66 44.98 0.12 3.58 16 29 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.14 4.67 6.26 -2.39 -0.01 4.66 16 34 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 35 H 0.09 2.01 6.60 -2.39 -0.02 2.00 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.22 8.11 -2.39 -0.02 1.20 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.43 1.19 9.10 -74.05 -0.67 0.52 16 40 H 0.08 1.61 5.47 -2.39 -0.01 1.60 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.09 3.05 5.77 -2.39 -0.01 3.04 16 47 H 0.06 1.70 5.35 -2.39 -0.01 1.69 16 Total: -1.00 -80.10 369.75 -0.23 -80.33 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.31 Total: 18.18 kcal Atomic # 6 Polarization: -53.13 SS G_CDS: 3.22 Total: -49.91 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.29 Total: -83.14 kcal Atomic # 8 Polarization: -100.43 SS G_CDS: -4.22 Total: -104.65 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 94.43 SS G_CDS: -0.27 Total: 94.15 kcal Total: -80.10 -0.23 -80.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.550 kcal (2) G-P(sol) polarization free energy of solvation -80.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds