Wall clock time and date at job start Wed Apr 1 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00158 * 2 1 4 4 H 1.48507 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46722 * 299.99434 * 3 2 1 6 6 H 1.48494 * 109.47270 * 59.99724 * 3 2 1 7 7 C 1.37880 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00541 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99419 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46839 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47439 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54535 * 74.15643 * 11 10 9 13 13 O 1.42112 * 110.54084 * 297.40799 * 11 10 9 14 14 N 1.65602 * 104.45432 * 185.78571 * 11 10 9 15 15 C 1.47026 * 120.75927 * 313.06301 * 14 11 10 16 16 C 1.53159 * 108.87603 * 233.12835 * 15 14 11 17 17 C 1.53066 * 109.53016 * 305.83471 * 16 15 14 18 18 H 1.09002 * 109.51250 * 301.51849 * 17 16 15 19 19 C 1.50704 * 109.54326 * 181.40519 * 17 16 15 20 20 O 1.20827 * 119.99841 * 240.21226 * 19 17 16 21 21 O 1.34223 * 119.99997 * 60.20610 * 19 17 16 22 22 C 1.53355 * 109.24497 * 61.45388 * 17 16 15 23 23 H 1.09000 * 109.68542 * 177.16986 * 22 17 16 24 24 C 1.53077 * 108.77208 * 57.19981 * 22 17 16 25 25 C 1.52920 * 109.74064 * 182.22600 * 24 22 17 26 26 C 1.53051 * 109.27457 * 60.58251 * 25 24 22 27 27 C 1.52968 * 109.22413 * 299.32137 * 26 25 24 28 28 C 1.46746 * 120.76631 * 133.03714 * 14 11 10 29 29 H 1.09005 * 108.83418 * 244.85087 * 28 14 11 30 30 H 0.97007 * 119.99937 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47181 * 60.00326 * 9 7 2 32 32 H 1.09002 * 109.47174 * 299.99797 * 9 7 2 33 33 H 1.09002 * 109.47324 * 59.99666 * 10 9 7 34 34 H 1.09002 * 109.47152 * 299.99908 * 10 9 7 35 35 H 1.09000 * 109.56997 * 113.31158 * 15 14 11 36 36 H 1.09000 * 109.57234 * 352.94360 * 15 14 11 37 37 H 1.09003 * 109.46004 * 185.82131 * 16 15 14 38 38 H 1.08998 * 109.45290 * 65.84731 * 16 15 14 39 39 H 0.96705 * 117.00219 * 180.02562 * 21 19 17 40 40 H 1.09005 * 109.42345 * 62.14328 * 24 22 17 41 41 H 1.08993 * 109.37918 * 302.28355 * 24 22 17 42 42 H 1.09006 * 109.50064 * 300.64327 * 25 24 22 43 43 H 1.08995 * 109.53296 * 180.54416 * 25 24 22 44 44 H 1.09011 * 109.51008 * 179.40075 * 26 25 24 45 45 H 1.08998 * 109.56002 * 59.27682 * 26 25 24 46 46 H 1.08996 * 109.40206 * 179.88312 * 27 26 25 47 47 H 1.09001 * 109.39634 * 299.62857 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 -0.0002 12 8 0.7746 -5.4829 -1.2806 13 8 0.5579 -5.3589 1.1809 14 7 2.5131 -6.3887 0.1615 15 6 3.7307 -6.3434 -0.6613 16 6 3.9076 -7.6951 -1.3594 17 6 3.8887 -8.8158 -0.3170 18 1 4.6847 -8.6510 0.4092 19 6 4.0972 -10.1430 -0.9998 20 8 3.2508 -11.0018 -0.9223 21 8 5.2230 -10.3710 -1.6941 22 6 2.5332 -8.8162 0.4002 23 1 2.4932 -9.6431 1.1092 24 6 1.4241 -8.9768 -0.6426 25 6 0.0585 -8.9246 0.0435 26 6 -0.1057 -7.5714 0.7396 27 6 0.9913 -7.4107 1.7934 28 6 2.3632 -7.4813 1.1297 29 1 3.1374 -7.3854 1.8910 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8903 33 1 2.8718 -3.6043 0.8905 34 1 2.8717 -3.6044 -0.8895 35 1 4.5937 -6.1451 -0.0257 36 1 3.6370 -5.5559 -1.4091 37 1 4.8600 -7.7083 -1.8895 38 1 3.0946 -7.8460 -2.0696 39 1 5.3115 -11.2372 -2.1149 40 1 1.5389 -9.9352 -1.1492 41 1 1.4943 -8.1704 -1.3724 42 1 -0.0088 -9.7240 0.7814 43 1 -0.7282 -9.0489 -0.7006 44 1 -1.0826 -7.5260 1.2211 45 1 -0.0246 -6.7707 0.0045 46 1 0.8783 -6.4469 2.2896 47 1 0.9046 -8.2087 2.5309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:13 Heat of formation + Delta-G solvation = -135.253019 kcal Electronic energy + Delta-G solvation = -30942.177304 eV Core-core repulsion = 26832.095097 eV Total energy + Delta-G solvation = -4110.082207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25777 -39.57237 -37.04014 -36.41232 -35.97341 -34.84187 -33.90865 -33.41691 -31.23978 -30.53772 -29.32321 -26.32706 -25.64227 -23.34194 -22.90289 -22.51444 -21.70021 -20.54110 -19.36742 -18.28664 -18.23358 -17.47057 -16.77551 -16.37115 -15.95932 -15.92823 -15.62188 -15.35414 -15.02302 -14.75171 -14.55644 -13.90935 -13.65657 -13.60199 -13.47278 -13.12574 -12.71999 -12.55002 -12.54244 -12.44596 -12.16807 -11.85518 -11.77763 -11.56187 -11.38021 -11.34494 -11.24790 -11.14065 -11.08634 -10.76311 -10.69408 -10.46519 -10.39906 -10.28532 -10.10703 -10.01311 -9.70576 -9.29608 -9.22120 -8.76901 -8.53368 -6.15165 -4.20919 0.73077 1.94559 2.74018 2.99792 3.23464 3.30865 3.33983 4.11125 4.25465 4.33254 4.39367 4.57831 4.74411 4.77317 4.84112 4.94947 5.04467 5.19596 5.20733 5.23333 5.32956 5.38273 5.39918 5.51684 5.53975 5.55147 5.63016 5.65473 5.71898 5.73610 5.86746 6.04599 6.09522 6.12974 6.24688 6.31910 6.34857 6.43735 6.49728 6.52401 6.72457 6.94790 7.26323 7.32642 7.64132 7.77860 8.14347 8.82689 9.44137 10.95848 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.003274 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.348942 B = 8549.246552 C = 9431.475859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.595 4.595 11 S 2.582 3.418 12 O -0.966 6.966 13 O -0.950 6.950 14 N -1.000 6.000 15 C 0.124 3.876 16 C -0.129 4.129 17 C -0.074 4.074 18 H 0.111 0.889 19 C 0.483 3.517 20 O -0.508 6.508 21 O -0.517 6.517 22 C -0.078 4.078 23 H 0.089 0.911 24 C -0.130 4.130 25 C -0.122 4.122 26 C -0.117 4.117 27 C -0.162 4.162 28 C 0.171 3.829 29 H 0.074 0.926 30 H 0.265 0.735 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.408 0.592 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.151 0.849 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.146 -19.918 0.321 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.009 4.009 10 C -0.727 4.727 11 S 2.685 3.315 12 O -0.956 6.956 13 O -0.940 6.940 14 N -0.838 5.838 15 C -0.002 4.002 16 C -0.168 4.168 17 C -0.093 4.093 18 H 0.128 0.872 19 C 0.325 3.675 20 O -0.396 6.396 21 O -0.329 6.329 22 C -0.098 4.098 23 H 0.107 0.893 24 C -0.167 4.167 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.201 4.201 28 C 0.065 3.935 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.266 0.734 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.168 0.832 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.777 -19.821 0.425 21.681 hybrid contribution 1.196 0.519 -0.391 1.361 sum 9.972 -19.301 0.034 21.725 Atomic orbital electron populations 1.69963 1.06120 1.27125 1.49563 1.25072 0.94974 0.99565 0.94877 0.86421 0.79944 0.83174 0.77806 1.19613 1.20768 1.20765 1.21038 0.93091 0.89738 1.52143 0.91982 1.18944 0.92614 0.90468 0.98857 1.30462 1.13955 1.18379 1.09938 1.06315 0.74769 0.75499 0.74910 1.93535 1.75112 1.83846 1.43059 1.93553 1.68567 1.84677 1.47205 1.57896 1.35060 1.40528 1.50340 1.21377 0.87748 0.97258 0.93825 1.21970 1.03950 0.93381 0.97478 1.21158 1.00703 0.89155 0.98266 0.87151 1.23581 0.78279 0.90026 0.75601 1.90689 1.43438 1.46817 1.58623 1.84550 1.42055 1.42507 1.63795 1.21484 0.92274 0.98070 0.98004 0.89305 1.21873 0.93720 1.03130 0.98004 1.21611 0.96931 0.97832 0.99574 1.21914 0.99831 0.96033 0.97654 1.22838 0.91236 1.06898 0.99152 1.20804 0.98946 0.84558 0.89202 0.90801 0.92552 0.95165 0.94581 0.86011 0.86586 0.90668 0.89527 0.89509 0.89862 0.73383 0.90436 0.90884 0.92181 0.92170 0.91111 0.93293 0.83249 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.76 4.98 -27.88 -0.14 0.62 16 10 C -0.59 -11.04 5.47 37.16 0.20 -10.83 16 11 S 2.58 44.75 3.64 -107.50 -0.39 44.36 16 12 O -0.97 -19.59 16.75 -57.54 -0.96 -20.55 16 13 O -0.95 -17.70 11.17 -57.54 -0.64 -18.34 16 14 N -1.00 -12.76 2.55 -106.85 -0.27 -13.03 16 15 C 0.12 1.22 6.14 -3.67 -0.02 1.20 16 16 C -0.13 -1.17 4.92 -26.62 -0.13 -1.30 16 17 C -0.07 -0.65 2.37 -91.55 -0.22 -0.87 16 18 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 19 C 0.48 4.58 7.34 36.01 0.26 4.85 16 20 O -0.51 -6.24 14.58 -18.75 -0.27 -6.51 16 21 O -0.52 -3.62 13.31 -39.24 -0.52 -4.14 16 22 C -0.08 -0.84 1.79 -90.36 -0.16 -1.00 16 23 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 24 C -0.13 -1.68 4.35 -26.73 -0.12 -1.80 16 25 C -0.12 -1.62 5.92 -26.75 -0.16 -1.78 16 26 C -0.12 -1.78 4.68 -26.72 -0.13 -1.90 16 27 C -0.16 -2.15 4.82 -26.97 -0.13 -2.28 16 28 C 0.17 1.96 2.94 -67.98 -0.20 1.76 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 34 H 0.12 1.92 7.38 -51.92 -0.38 1.54 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.84 6.98 -51.93 -0.36 0.47 16 37 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 38 H 0.08 0.89 6.17 -51.93 -0.32 0.57 16 39 H 0.41 1.26 9.10 45.56 0.41 1.68 16 40 H 0.08 1.03 5.76 -51.93 -0.30 0.73 16 41 H 0.07 1.05 5.71 -51.93 -0.30 0.76 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 45 H 0.05 0.87 3.28 -27.12 -0.09 0.78 16 46 H 0.15 2.26 5.08 -56.87 -0.29 1.97 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -34.86 359.52 -9.51 -44.37 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.23 Total: 4.30 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -1.34 Total: -26.30 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.46 Total: -38.48 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -2.40 Total: -49.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -0.39 Total: 44.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.86 -9.51 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.885 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds