Wall clock time and date at job start Wed Apr 1 2020 03:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00158 * 2 1 4 4 H 1.48507 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46722 * 299.99434 * 3 2 1 6 6 H 1.48494 * 109.47270 * 59.99724 * 3 2 1 7 7 C 1.37880 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00541 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99419 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46839 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47439 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54535 * 74.15643 * 11 10 9 13 13 O 1.42112 * 110.54084 * 297.40799 * 11 10 9 14 14 N 1.65602 * 104.45432 * 185.78571 * 11 10 9 15 15 C 1.47026 * 120.75927 * 313.06301 * 14 11 10 16 16 C 1.53159 * 108.87603 * 233.12835 * 15 14 11 17 17 C 1.53066 * 109.53016 * 305.83471 * 16 15 14 18 18 H 1.09002 * 109.51250 * 301.51849 * 17 16 15 19 19 C 1.50704 * 109.54326 * 181.40519 * 17 16 15 20 20 O 1.20827 * 119.99841 * 240.21226 * 19 17 16 21 21 O 1.34223 * 119.99997 * 60.20610 * 19 17 16 22 22 C 1.53355 * 109.24497 * 61.45388 * 17 16 15 23 23 H 1.09000 * 109.68542 * 177.16986 * 22 17 16 24 24 C 1.53077 * 108.77208 * 57.19981 * 22 17 16 25 25 C 1.52920 * 109.74064 * 182.22600 * 24 22 17 26 26 C 1.53051 * 109.27457 * 60.58251 * 25 24 22 27 27 C 1.52968 * 109.22413 * 299.32137 * 26 25 24 28 28 C 1.46746 * 120.76631 * 133.03714 * 14 11 10 29 29 H 1.09005 * 108.83418 * 244.85087 * 28 14 11 30 30 H 0.97007 * 119.99937 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47181 * 60.00326 * 9 7 2 32 32 H 1.09002 * 109.47174 * 299.99797 * 9 7 2 33 33 H 1.09002 * 109.47324 * 59.99666 * 10 9 7 34 34 H 1.09002 * 109.47152 * 299.99908 * 10 9 7 35 35 H 1.09000 * 109.56997 * 113.31158 * 15 14 11 36 36 H 1.09000 * 109.57234 * 352.94360 * 15 14 11 37 37 H 1.09003 * 109.46004 * 185.82131 * 16 15 14 38 38 H 1.08998 * 109.45290 * 65.84731 * 16 15 14 39 39 H 0.96705 * 117.00219 * 180.02562 * 21 19 17 40 40 H 1.09005 * 109.42345 * 62.14328 * 24 22 17 41 41 H 1.08993 * 109.37918 * 302.28355 * 24 22 17 42 42 H 1.09006 * 109.50064 * 300.64327 * 25 24 22 43 43 H 1.08995 * 109.53296 * 180.54416 * 25 24 22 44 44 H 1.09011 * 109.51008 * 179.40075 * 26 25 24 45 45 H 1.08998 * 109.56002 * 59.27682 * 26 25 24 46 46 H 1.08996 * 109.40206 * 179.88312 * 27 26 25 47 47 H 1.09001 * 109.39634 * 299.62857 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 -0.0002 12 8 0.7746 -5.4829 -1.2806 13 8 0.5579 -5.3589 1.1809 14 7 2.5131 -6.3887 0.1615 15 6 3.7307 -6.3434 -0.6613 16 6 3.9076 -7.6951 -1.3594 17 6 3.8887 -8.8158 -0.3170 18 1 4.6847 -8.6510 0.4092 19 6 4.0972 -10.1430 -0.9998 20 8 3.2508 -11.0018 -0.9223 21 8 5.2230 -10.3710 -1.6941 22 6 2.5332 -8.8162 0.4002 23 1 2.4932 -9.6431 1.1092 24 6 1.4241 -8.9768 -0.6426 25 6 0.0585 -8.9246 0.0435 26 6 -0.1057 -7.5714 0.7396 27 6 0.9913 -7.4107 1.7934 28 6 2.3632 -7.4813 1.1297 29 1 3.1374 -7.3854 1.8910 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8903 33 1 2.8718 -3.6043 0.8905 34 1 2.8717 -3.6044 -0.8895 35 1 4.5937 -6.1451 -0.0257 36 1 3.6370 -5.5559 -1.4091 37 1 4.8600 -7.7083 -1.8895 38 1 3.0946 -7.8460 -2.0696 39 1 5.3115 -11.2372 -2.1149 40 1 1.5389 -9.9352 -1.1492 41 1 1.4943 -8.1704 -1.3724 42 1 -0.0088 -9.7240 0.7814 43 1 -0.7282 -9.0489 -0.7006 44 1 -1.0826 -7.5260 1.2211 45 1 -0.0246 -6.7707 0.0045 46 1 0.8783 -6.4469 2.2896 47 1 0.9046 -8.2087 2.5309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065836.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:13 Heat of formation + Delta-G solvation = -160.596814 kcal Electronic energy + Delta-G solvation = -30943.276293 eV Core-core repulsion = 26832.095097 eV Total energy + Delta-G solvation = -4111.181196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.04883 -40.41033 -38.32343 -37.34789 -37.06671 -36.07849 -35.74150 -34.32963 -33.13279 -31.47163 -30.32357 -27.58705 -27.15492 -24.25834 -24.00251 -23.46627 -23.26652 -21.46737 -20.52637 -19.38167 -18.95748 -18.92802 -18.05543 -17.51238 -17.17984 -16.96786 -16.65214 -16.50086 -16.30132 -16.14110 -15.68325 -15.20502 -14.89175 -14.60411 -14.44411 -14.30721 -14.13264 -13.77403 -13.61114 -13.50853 -13.40936 -13.26126 -12.95685 -12.83556 -12.78947 -12.52886 -12.46324 -12.36273 -12.26119 -12.15520 -12.10348 -11.82373 -11.56767 -11.52926 -11.32388 -11.22407 -11.05660 -10.87272 -10.65848 -10.34792 -9.79194 -8.26048 -6.40355 -0.63998 1.27008 1.41673 1.42272 1.55649 1.80366 2.19012 2.38414 2.84082 3.07556 3.37658 3.41626 3.56730 3.82167 3.91135 3.97123 4.00986 4.05854 4.13596 4.21879 4.29975 4.34240 4.50102 4.56631 4.59935 4.66235 4.67413 4.73226 4.79325 4.83446 4.90230 4.98489 5.09431 5.15716 5.16794 5.25797 5.28068 5.29056 5.35166 5.41023 5.48409 5.68417 5.72227 5.80294 5.85776 6.06036 6.73899 7.07648 7.30208 8.86477 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.003274 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.348942 B = 8549.246552 C = 9431.475859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.024 3.976 10 C -0.595 4.595 11 S 2.598 3.402 12 O -1.005 7.005 13 O -0.969 6.969 14 N -0.990 5.990 15 C 0.110 3.890 16 C -0.126 4.126 17 C -0.071 4.071 18 H 0.146 0.854 19 C 0.488 3.512 20 O -0.543 6.543 21 O -0.510 6.510 22 C -0.074 4.074 23 H 0.102 0.898 24 C -0.128 4.128 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.163 4.163 28 C 0.168 3.832 29 H 0.114 0.886 30 H 0.267 0.733 31 H -0.003 1.003 32 H 0.008 0.992 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.425 0.575 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.132 0.868 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 -20.876 1.233 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.096 0.904 9 C -0.015 4.015 10 C -0.726 4.726 11 S 2.700 3.300 12 O -0.995 6.995 13 O -0.959 6.959 14 N -0.832 5.832 15 C -0.014 4.014 16 C -0.164 4.164 17 C -0.090 4.090 18 H 0.164 0.836 19 C 0.332 3.668 20 O -0.433 6.433 21 O -0.324 6.324 22 C -0.094 4.094 23 H 0.120 0.880 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.164 4.164 27 C -0.203 4.203 28 C 0.063 3.937 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.015 0.985 32 H 0.027 0.973 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.131 0.869 38 H 0.076 0.924 39 H 0.287 0.713 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.038 0.962 46 H 0.149 0.851 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.812 -20.769 1.315 24.438 hybrid contribution -0.076 0.686 -0.710 0.990 sum 12.736 -20.082 0.605 23.788 Atomic orbital electron populations 1.70117 1.08161 1.28257 1.50980 1.26146 0.95848 1.03989 0.94386 0.85261 0.79313 0.77911 0.77761 1.17609 1.20500 1.20357 1.21564 0.94062 0.90681 1.51335 0.90376 1.18770 0.93526 0.93173 0.96021 1.30357 1.13020 1.17010 1.12195 1.05648 0.74967 0.75474 0.73881 1.93486 1.76476 1.84362 1.45142 1.93577 1.69980 1.84815 1.47515 1.57513 1.35127 1.39301 1.51211 1.21808 0.87400 0.97852 0.94356 1.21945 1.04362 0.92933 0.97204 1.21173 1.00425 0.88708 0.98722 0.83633 1.23633 0.78195 0.89771 0.75216 1.90689 1.44646 1.47985 1.59977 1.84498 1.40691 1.43915 1.63258 1.21438 0.92571 0.97789 0.97584 0.88000 1.21820 0.94332 1.02014 0.98364 1.21608 0.97276 0.97267 0.99682 1.21972 1.00548 0.96063 0.97774 1.22774 0.91759 1.06742 0.99003 1.21049 0.98813 0.84157 0.89670 0.86811 0.92428 0.98460 0.97333 0.83476 0.84581 0.86618 0.89773 0.86868 0.92366 0.71346 0.90869 0.92956 0.90328 0.93310 0.92040 0.96227 0.85138 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 13.29 21.45 0.28 -56.69 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 3 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 4 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.54 -29.50 9.11 25.60 0.23 -29.27 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.02 1.25 4.98 29.85 0.15 1.40 16 10 C -0.59 -21.99 5.47 71.98 0.39 -21.60 16 11 S 2.60 91.87 3.64 -56.49 -0.21 91.67 16 12 O -1.01 -43.01 16.75 -127.65 -2.14 -45.14 16 13 O -0.97 -37.45 11.17 -127.65 -1.43 -38.88 16 14 N -0.99 -23.36 2.55 -491.95 -1.26 -24.62 16 15 C 0.11 1.81 6.14 86.33 0.53 2.34 16 16 C -0.13 -1.87 4.92 30.67 0.15 -1.72 16 17 C -0.07 -0.98 2.37 -11.40 -0.03 -1.01 16 18 H 0.15 1.07 8.14 -2.39 -0.02 1.05 16 19 C 0.49 7.74 7.34 71.24 0.52 8.27 16 20 O -0.54 -12.23 14.58 21.96 0.32 -11.91 16 21 O -0.51 -5.30 13.31 -51.35 -0.68 -5.98 16 22 C -0.07 -1.37 1.79 -10.63 -0.02 -1.39 16 23 H 0.10 1.70 8.04 -2.39 -0.02 1.68 16 24 C -0.13 -3.23 4.35 30.59 0.13 -3.10 16 25 C -0.12 -3.25 5.92 30.58 0.18 -3.06 16 26 C -0.13 -3.93 4.68 30.60 0.14 -3.79 16 27 C -0.16 -4.13 4.82 30.44 0.15 -3.98 16 28 C 0.17 3.36 2.94 44.82 0.13 3.49 16 29 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.15 4.60 8.14 -2.39 -0.02 4.58 16 34 H 0.14 4.39 7.38 -2.39 -0.02 4.37 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.43 6.98 -2.39 -0.02 1.42 16 37 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 38 H 0.06 1.18 6.17 -2.39 -0.01 1.17 16 39 H 0.43 1.30 9.10 -74.05 -0.67 0.62 16 40 H 0.07 1.92 5.76 -2.38 -0.01 1.90 16 41 H 0.05 1.54 5.71 -2.39 -0.01 1.52 16 42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.02 0.73 3.28 -18.16 -0.06 0.67 16 46 H 0.13 3.91 5.08 -80.61 -0.41 3.50 16 47 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -80.56 359.52 -0.07 -80.63 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -0.12 Total: 19.38 kcal Atomic # 6 Polarization: -56.40 SS G_CDS: 3.13 Total: -53.27 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -0.97 Total: -81.31 kcal Atomic # 8 Polarization: -97.99 SS G_CDS: -3.93 Total: -101.92 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 91.87 SS G_CDS: -0.21 Total: 91.67 kcal Total: -80.56 -0.07 -80.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065836.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.963 kcal (2) G-P(sol) polarization free energy of solvation -80.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds