Wall clock time and date at job start Wed Apr 1 2020 03:20:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1
5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1
6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1
7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2
11 11 S 1.81408 * 109.46799 * 180.02562 * 10 9 7
12 12 O 1.42102 * 110.54035 * 291.62208 * 11 10 9
13 13 O 1.42098 * 110.54418 * 68.37375 * 11 10 9
14 14 N 1.65603 * 104.44779 * 180.02562 * 11 10 9
15 15 C 1.46946 * 120.78237 * 269.71563 * 14 11 10
16 16 C 1.52717 * 109.18468 * 233.88873 * 15 14 11
17 17 C 1.53097 * 109.50227 * 305.95723 * 16 15 14
18 18 H 1.08997 * 109.48423 * 300.71342 * 17 16 15
19 19 C 1.50700 * 109.48474 * 180.67121 * 17 16 15
20 20 O 1.20824 * 120.00272 * 240.06975 * 19 17 16
21 21 O 1.34231 * 119.99598 * 60.06676 * 19 17 16
22 22 C 1.52895 * 109.40775 * 60.69343 * 17 16 15
23 23 H 1.08996 * 109.26078 * 57.82697 * 22 17 16
24 24 C 1.52660 * 110.10891 * 177.07483 * 22 17 16
25 25 C 1.52981 * 109.78568 * 61.68811 * 24 22 17
26 26 C 1.53046 * 109.24755 * 59.85377 * 25 24 22
27 27 C 1.52918 * 109.34288 * 299.47693 * 26 25 24
28 28 C 1.47193 * 120.79052 * 89.99593 * 14 11 10
29 29 H 1.09006 * 109.96558 * 5.35778 * 28 14 11
30 30 H 0.97000 * 120.00333 * 359.97438 * 1 2 3
31 31 H 1.09002 * 109.47152 * 60.00329 * 9 7 2
32 32 H 1.09001 * 109.46980 * 300.00429 * 9 7 2
33 33 H 1.09001 * 109.47194 * 299.99742 * 10 9 7
34 34 H 1.08992 * 109.47399 * 59.99914 * 10 9 7
35 35 H 1.08998 * 109.56148 * 353.78161 * 15 14 11
36 36 H 1.09007 * 109.55205 * 114.09571 * 15 14 11
37 37 H 1.08999 * 109.54729 * 185.88671 * 16 15 14
38 38 H 1.08996 * 109.34255 * 65.90521 * 16 15 14
39 39 H 0.96696 * 116.99806 * 180.02562 * 21 19 17
40 40 H 1.08999 * 109.41774 * 181.78849 * 24 22 17
41 41 H 1.09003 * 109.41478 * 301.65864 * 24 22 17
42 42 H 1.09007 * 109.50586 * 179.78358 * 25 24 22
43 43 H 1.08995 * 109.50910 * 299.92073 * 25 24 22
44 44 H 1.09000 * 109.49754 * 59.43920 * 26 25 24
45 45 H 1.09007 * 109.48959 * 179.51887 * 26 25 24
46 46 H 1.09001 * 109.43264 * 300.36853 * 27 26 25
47 47 H 1.08999 * 109.43359 * 180.51464 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0005
11 16 1.3383 -5.2331 -0.0013
12 8 0.6640 -5.4201 1.2355
13 8 0.6647 -5.4194 -1.2385
14 7 2.5206 -6.3927 -0.0005
15 6 3.0540 -6.9238 -1.2626
16 6 2.9427 -8.4468 -1.2531
17 6 3.6205 -9.0010 0.0028
18 1 4.6690 -8.7032 0.0115
19 6 3.5250 -10.5050 0.0036
20 8 2.9562 -11.0738 0.9051
21 8 4.0716 -11.2126 -0.9975
22 6 2.9223 -8.4452 1.2443
23 1 1.8659 -8.7119 1.2124
24 6 3.5391 -9.0441 2.5058
25 6 5.0166 -8.6576 2.5935
26 6 5.1374 -7.1326 2.6389
27 6 4.5366 -6.5388 1.3642
28 6 3.0576 -6.9204 1.2643
29 1 2.5005 -6.5085 2.1058
30 1 -0.4850 0.8400 0.0004
31 1 0.6241 -2.5568 -0.8903
32 1 0.6247 -2.5571 0.8897
33 1 2.8720 -3.6043 -0.8905
34 1 2.8720 -3.6043 0.8894
35 1 2.4809 -6.5226 -2.0985
36 1 4.1008 -6.6377 -1.3652
37 1 3.4305 -8.8537 -2.1389
38 1 1.8907 -8.7320 -1.2542
39 1 3.9844 -12.1746 -0.9537
40 1 3.0126 -8.6650 3.3817
41 1 3.4509 -10.1300 2.4718
42 1 5.4514 -9.0843 3.4975
43 1 5.5451 -9.0388 1.7197
44 1 4.5995 -6.7507 3.5066
45 1 6.1886 -6.8530 2.7101
46 1 5.0706 -6.9268 0.4967
47 1 4.6301 -5.4531 1.3908
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601065837.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:17
Heat of formation + Delta-G solvation = -183.502691 kcal
Electronic energy + Delta-G solvation = -30327.783094 eV
Core-core repulsion = 26215.608624 eV
Total energy + Delta-G solvation = -4112.174470 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.38798 -39.44563 -36.73091 -36.48680 -35.69420 -35.40582 -33.90014 -33.33489
-31.16875 -30.64979 -29.78621 -26.46349 -25.57828 -23.43094 -22.86070 -22.05481
-21.72507 -21.31317 -18.81075 -18.38053 -18.26638 -17.62899 -16.97085 -16.48842
-16.36139 -15.87662 -15.41021 -15.20726 -14.95347 -14.57505 -14.27572 -14.15325
-13.93169 -13.53060 -13.42652 -13.21786 -13.07127 -12.61803 -12.52999 -12.49494
-12.15964 -11.85725 -11.77545 -11.70252 -11.60708 -11.56433 -11.28638 -11.17776
-11.07778 -10.98998 -10.95050 -10.76161 -10.49941 -10.40566 -10.38858 -10.31615
-10.01751 -9.75225 -9.32253 -8.78158 -8.51214 -6.13355 -4.19228 0.71943
1.91954 2.73011 2.96760 3.26221 3.31209 3.32854 4.17452 4.26944
4.33185 4.38165 4.55097 4.55668 4.67716 4.79619 4.84307 4.90123
5.01889 5.05574 5.12521 5.21644 5.28062 5.28890 5.36147 5.46332
5.49106 5.53832 5.59073 5.65437 5.71022 5.75446 5.84674 5.88013
5.96702 5.98725 6.04781 6.13041 6.15020 6.33319 6.41928 6.47851
6.64012 7.28437 7.34480 7.62435 7.79197 8.16222 8.83957 9.45567
10.97619
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.019782 B = 0.003036 C = 0.002864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1415.073735 B = 9219.832284 C = 9775.331593
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.890 5.890
2 C 0.058 3.942
3 Si 0.900 3.100
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.521 4.521
8 H 0.061 0.939
9 C 0.028 3.972
10 C -0.588 4.588
11 S 2.587 3.413
12 O -0.963 6.963
13 O -0.964 6.964
14 N -1.006 6.006
15 C 0.119 3.881
16 C -0.123 4.123
17 C -0.075 4.075
18 H 0.115 0.885
19 C 0.483 3.517
20 O -0.507 6.507
21 O -0.517 6.517
22 C -0.075 4.075
23 H 0.083 0.917
24 C -0.132 4.132
25 C -0.122 4.122
26 C -0.119 4.119
27 C -0.136 4.136
28 C 0.157 3.843
29 H 0.112 0.888
30 H 0.266 0.734
31 H 0.033 0.967
32 H 0.033 0.967
33 H 0.119 0.881
34 H 0.119 0.881
35 H 0.102 0.898
36 H 0.071 0.929
37 H 0.088 0.912
38 H 0.075 0.925
39 H 0.408 0.592
40 H 0.069 0.931
41 H 0.093 0.907
42 H 0.062 0.938
43 H 0.056 0.944
44 H 0.068 0.932
45 H 0.065 0.935
46 H 0.070 0.930
47 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.725 -20.972 0.285 24.532
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.145 4.145
3 Si 0.727 3.273
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.560 4.560
8 H 0.079 0.921
9 C -0.011 4.011
10 C -0.721 4.721
11 S 2.687 3.313
12 O -0.953 6.953
13 O -0.954 6.954
14 N -0.841 5.841
15 C -0.006 4.006
16 C -0.162 4.162
17 C -0.094 4.094
18 H 0.133 0.867
19 C 0.326 3.674
20 O -0.395 6.395
21 O -0.329 6.329
22 C -0.095 4.095
23 H 0.102 0.898
24 C -0.170 4.170
25 C -0.159 4.159
26 C -0.157 4.157
27 C -0.175 4.175
28 C 0.051 3.949
29 H 0.130 0.870
30 H 0.075 0.925
31 H 0.051 0.949
32 H 0.051 0.949
33 H 0.138 0.862
34 H 0.137 0.863
35 H 0.120 0.880
36 H 0.090 0.910
37 H 0.107 0.893
38 H 0.093 0.907
39 H 0.266 0.734
40 H 0.087 0.913
41 H 0.111 0.889
42 H 0.081 0.919
43 H 0.075 0.925
44 H 0.087 0.913
45 H 0.083 0.917
46 H 0.088 0.912
47 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges 11.470 -20.773 0.487 23.734
hybrid contribution 1.004 0.573 -0.003 1.156
sum 12.474 -20.200 0.485 23.746
Atomic orbital electron populations
1.69944 1.06121 1.27335 1.49442 1.25069 0.94968 0.99531 0.94887
0.86529 0.79501 0.82541 0.78704 1.20069 1.21069 1.20072 1.20960
0.93012 0.89760 1.52307 0.92090 1.18959 0.92702 0.90603 0.98814
1.30495 1.13623 1.17970 1.10022 1.05779 0.74873 0.76478 0.74146
1.93533 1.71240 1.85192 1.45330 1.93528 1.71268 1.85255 1.45349
1.58221 1.59038 1.55886 1.10906 1.21284 1.00139 0.92967 0.86235
1.21817 1.01892 0.96439 0.96084 1.21145 1.03822 0.86124 0.98286
0.86692 1.23599 0.74093 0.91431 0.78296 1.90641 1.40445 1.72507
1.35928 1.84552 1.73519 1.25861 1.48929 1.21183 1.00885 0.94486
0.92974 0.89813 1.21859 0.95214 1.03071 0.96867 1.21611 0.96776
0.96026 1.01508 1.21532 1.00889 0.95301 0.97992 1.22008 0.95254
1.01686 0.98544 1.21085 0.94731 0.92794 0.86291 0.87043 0.92451
0.94914 0.94913 0.86237 0.86260 0.88021 0.91042 0.89345 0.90661
0.73376 0.91250 0.88904 0.91876 0.92501 0.91349 0.91657 0.91162
0.90813
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16
2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16
3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16
4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16
8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16
9 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16
10 C -0.59 -10.96 6.12 37.16 0.23 -10.73 16
11 S 2.59 45.64 5.46 -107.50 -0.59 45.05 16
12 O -0.96 -19.67 16.63 -57.54 -0.96 -20.62 16
13 O -0.96 -19.43 16.60 -57.54 -0.96 -20.38 16
14 N -1.01 -12.90 2.92 -106.55 -0.31 -13.21 16
15 C 0.12 1.22 5.93 -3.94 -0.02 1.20 16
16 C -0.12 -1.12 5.28 -26.83 -0.14 -1.27 16
17 C -0.07 -0.67 1.57 -91.78 -0.14 -0.82 16
18 H 0.12 0.86 5.04 -51.93 -0.26 0.60 16
19 C 0.48 4.53 7.34 36.01 0.26 4.79 16
20 O -0.51 -6.07 14.25 -18.75 -0.27 -6.33 16
21 O -0.52 -3.54 13.32 -39.26 -0.52 -4.06 16
22 C -0.08 -0.81 1.68 -90.80 -0.15 -0.96 16
23 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16
24 C -0.13 -1.29 5.10 -26.92 -0.14 -1.43 16
25 C -0.12 -0.98 5.67 -26.72 -0.15 -1.13 16
26 C -0.12 -0.97 5.92 -26.75 -0.16 -1.13 16
27 C -0.14 -1.25 4.94 -26.74 -0.13 -1.38 16
28 C 0.16 1.80 2.63 -67.47 -0.18 1.62 16
29 H 0.11 1.42 6.93 -51.93 -0.36 1.06 16
30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
31 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16
32 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16
33 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16
34 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16
35 H 0.10 1.12 6.87 -51.93 -0.36 0.76 16
36 H 0.07 0.56 7.29 -51.92 -0.38 0.18 16
37 H 0.09 0.64 8.10 -51.93 -0.42 0.21 16
38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
39 H 0.41 1.19 9.10 45.56 0.41 1.61 16
40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
41 H 0.09 1.01 5.27 -51.93 -0.27 0.74 16
42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
43 H 0.06 0.43 6.62 -51.93 -0.34 0.08 16
44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
46 H 0.07 0.55 5.43 -51.93 -0.28 0.27 16
47 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
LS Contribution 371.29 15.07 5.60 5.60
Total: -1.00 -35.66 371.29 -10.02 -45.68
By element:
Atomic # 1 Polarization: 8.05 SS G_CDS: -6.45 Total: 1.60 kcal
Atomic # 6 Polarization: -22.41 SS G_CDS: -1.28 Total: -23.69 kcal
Atomic # 7 Polarization: -39.27 SS G_CDS: 0.43 Total: -38.84 kcal
Atomic # 8 Polarization: -48.70 SS G_CDS: -2.70 Total: -51.40 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal
Atomic # 16 Polarization: 45.64 SS G_CDS: -0.59 Total: 45.05 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -35.66 -10.02 -45.68 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601065837.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -137.819 kcal
(2) G-P(sol) polarization free energy of solvation -35.665 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.483 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.684 kcal
(6) G-S(sol) free energy of system = (1) + (5) -183.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds