Wall clock time and date at job start Wed Apr 1 2020 03:20:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86803 * 119.99951 * 2 1
4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1
5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1
6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1
7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1
10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2
11 11 S 1.81408 * 109.46799 * 180.02562 * 10 9 7
12 12 O 1.42102 * 110.54035 * 291.62208 * 11 10 9
13 13 O 1.42098 * 110.54418 * 68.37375 * 11 10 9
14 14 N 1.65603 * 104.44779 * 180.02562 * 11 10 9
15 15 C 1.46946 * 120.78237 * 269.71563 * 14 11 10
16 16 C 1.52717 * 109.18468 * 233.88873 * 15 14 11
17 17 C 1.53097 * 109.50227 * 305.95723 * 16 15 14
18 18 H 1.08997 * 109.48423 * 300.71342 * 17 16 15
19 19 C 1.50700 * 109.48474 * 180.67121 * 17 16 15
20 20 O 1.20824 * 120.00272 * 240.06975 * 19 17 16
21 21 O 1.34231 * 119.99598 * 60.06676 * 19 17 16
22 22 C 1.52895 * 109.40775 * 60.69343 * 17 16 15
23 23 H 1.08996 * 109.26078 * 57.82697 * 22 17 16
24 24 C 1.52660 * 110.10891 * 177.07483 * 22 17 16
25 25 C 1.52981 * 109.78568 * 61.68811 * 24 22 17
26 26 C 1.53046 * 109.24755 * 59.85377 * 25 24 22
27 27 C 1.52918 * 109.34288 * 299.47693 * 26 25 24
28 28 C 1.47193 * 120.79052 * 89.99593 * 14 11 10
29 29 H 1.09006 * 109.96558 * 5.35778 * 28 14 11
30 30 H 0.97000 * 120.00333 * 359.97438 * 1 2 3
31 31 H 1.09002 * 109.47152 * 60.00329 * 9 7 2
32 32 H 1.09001 * 109.46980 * 300.00429 * 9 7 2
33 33 H 1.09001 * 109.47194 * 299.99742 * 10 9 7
34 34 H 1.08992 * 109.47399 * 59.99914 * 10 9 7
35 35 H 1.08998 * 109.56148 * 353.78161 * 15 14 11
36 36 H 1.09007 * 109.55205 * 114.09571 * 15 14 11
37 37 H 1.08999 * 109.54729 * 185.88671 * 16 15 14
38 38 H 1.08996 * 109.34255 * 65.90521 * 16 15 14
39 39 H 0.96696 * 116.99806 * 180.02562 * 21 19 17
40 40 H 1.08999 * 109.41774 * 181.78849 * 24 22 17
41 41 H 1.09003 * 109.41478 * 301.65864 * 24 22 17
42 42 H 1.09007 * 109.50586 * 179.78358 * 25 24 22
43 43 H 1.08995 * 109.50910 * 299.92073 * 25 24 22
44 44 H 1.09000 * 109.49754 * 59.43920 * 26 25 24
45 45 H 1.09007 * 109.48959 * 179.51887 * 26 25 24
46 46 H 1.09001 * 109.43264 * 300.36853 * 27 26 25
47 47 H 1.08999 * 109.43359 * 180.51464 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2841 2.7464 0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0046 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2511 -2.4992 -0.0005
10 6 2.2454 -3.6620 -0.0005
11 16 1.3383 -5.2331 -0.0013
12 8 0.6640 -5.4201 1.2355
13 8 0.6647 -5.4194 -1.2385
14 7 2.5206 -6.3927 -0.0005
15 6 3.0540 -6.9238 -1.2626
16 6 2.9427 -8.4468 -1.2531
17 6 3.6205 -9.0010 0.0028
18 1 4.6690 -8.7032 0.0115
19 6 3.5250 -10.5050 0.0036
20 8 2.9562 -11.0738 0.9051
21 8 4.0716 -11.2126 -0.9975
22 6 2.9223 -8.4452 1.2443
23 1 1.8659 -8.7119 1.2124
24 6 3.5391 -9.0441 2.5058
25 6 5.0166 -8.6576 2.5935
26 6 5.1374 -7.1326 2.6389
27 6 4.5366 -6.5388 1.3642
28 6 3.0576 -6.9204 1.2643
29 1 2.5005 -6.5085 2.1058
30 1 -0.4850 0.8400 0.0004
31 1 0.6241 -2.5568 -0.8903
32 1 0.6247 -2.5571 0.8897
33 1 2.8720 -3.6043 -0.8905
34 1 2.8720 -3.6043 0.8894
35 1 2.4809 -6.5226 -2.0985
36 1 4.1008 -6.6377 -1.3652
37 1 3.4305 -8.8537 -2.1389
38 1 1.8907 -8.7320 -1.2542
39 1 3.9844 -12.1746 -0.9537
40 1 3.0126 -8.6650 3.3817
41 1 3.4509 -10.1300 2.4718
42 1 5.4514 -9.0843 3.4975
43 1 5.5451 -9.0388 1.7197
44 1 4.5995 -6.7507 3.5066
45 1 6.1886 -6.8530 2.7101
46 1 5.0706 -6.9268 0.4967
47 1 4.6301 -5.4531 1.3908
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001601065837.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:20:16
Heat of formation + Delta-G solvation = -209.282124 kcal
Electronic energy + Delta-G solvation = -30328.900974 eV
Core-core repulsion = 26215.608624 eV
Total energy + Delta-G solvation = -4113.292350 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.15070 -40.20615 -38.25068 -37.19933 -37.01455 -36.42605 -35.88382 -34.18612
-33.11479 -31.42307 -30.57517 -27.64331 -27.20626 -24.22284 -23.64276 -23.59421
-22.52204 -22.39254 -19.99518 -19.22503 -19.07970 -19.00534 -18.33607 -17.66643
-17.39522 -17.05065 -16.68178 -16.53026 -16.25226 -15.79554 -15.19274 -15.01831
-14.93365 -14.81317 -14.45526 -14.27144 -14.07498 -13.84244 -13.73046 -13.40090
-13.33424 -13.20694 -13.12489 -13.03278 -12.89292 -12.79507 -12.56912 -12.41483
-12.22918 -12.17265 -12.11896 -11.96909 -11.80286 -11.72217 -11.49970 -11.29363
-11.12975 -10.95916 -10.80057 -10.63492 -9.84432 -8.25255 -6.39746 -0.72336
1.21361 1.41653 1.45269 1.53371 1.71454 2.12996 2.38876 2.86280
3.07996 3.14575 3.39898 3.59643 3.74439 3.86976 3.95524 4.06116
4.10896 4.15393 4.17863 4.28282 4.33121 4.42672 4.51083 4.57932
4.61693 4.71522 4.74775 4.78764 4.85840 4.88883 4.95046 5.10651
5.19514 5.24987 5.26714 5.27609 5.28756 5.30704 5.42034 5.44838
5.60510 5.68675 5.69049 5.76830 6.06268 6.74048 7.04159 7.30664
8.86865
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.019782 B = 0.003036 C = 0.002864
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1415.073735 B = 9219.832284 C = 9775.331593
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.936 5.936
2 C -0.005 4.005
3 Si 0.974 3.026
4 H -0.261 1.261
5 H -0.286 1.286
6 H -0.262 1.262
7 C -0.538 4.538
8 H 0.078 0.922
9 C 0.021 3.979
10 C -0.582 4.582
11 S 2.606 3.394
12 O -0.998 6.998
13 O -0.993 6.993
14 N -0.994 5.994
15 C 0.108 3.892
16 C -0.120 4.120
17 C -0.072 4.072
18 H 0.143 0.857
19 C 0.489 3.511
20 O -0.540 6.540
21 O -0.508 6.508
22 C -0.074 4.074
23 H 0.052 0.948
24 C -0.130 4.130
25 C -0.116 4.116
26 C -0.117 4.117
27 C -0.133 4.133
28 C 0.152 3.848
29 H 0.090 0.910
30 H 0.267 0.733
31 H 0.005 0.995
32 H 0.002 0.998
33 H 0.146 0.854
34 H 0.141 0.859
35 H 0.093 0.907
36 H 0.111 0.889
37 H 0.118 0.882
38 H 0.053 0.947
39 H 0.426 0.574
40 H 0.058 0.942
41 H 0.083 0.917
42 H 0.071 0.929
43 H 0.071 0.929
44 H 0.059 0.941
45 H 0.084 0.916
46 H 0.094 0.906
47 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.796 -21.500 -0.513 27.288
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.203 4.203
3 Si 0.798 3.202
4 H -0.186 1.186
5 H -0.211 1.211
6 H -0.187 1.187
7 C -0.577 4.577
8 H 0.096 0.904
9 C -0.018 4.018
10 C -0.715 4.715
11 S 2.706 3.294
12 O -0.989 6.989
13 O -0.983 6.983
14 N -0.832 5.832
15 C -0.016 4.016
16 C -0.159 4.159
17 C -0.091 4.091
18 H 0.160 0.840
19 C 0.333 3.667
20 O -0.430 6.430
21 O -0.321 6.321
22 C -0.095 4.095
23 H 0.070 0.930
24 C -0.167 4.167
25 C -0.153 4.153
26 C -0.155 4.155
27 C -0.172 4.172
28 C 0.046 3.954
29 H 0.108 0.892
30 H 0.076 0.924
31 H 0.023 0.977
32 H 0.020 0.980
33 H 0.164 0.836
34 H 0.159 0.841
35 H 0.111 0.889
36 H 0.129 0.871
37 H 0.136 0.864
38 H 0.072 0.928
39 H 0.288 0.712
40 H 0.077 0.923
41 H 0.101 0.899
42 H 0.090 0.910
43 H 0.089 0.911
44 H 0.077 0.923
45 H 0.103 0.897
46 H 0.112 0.888
47 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 15.556 -21.315 -0.330 26.390
hybrid contribution -0.289 0.590 0.229 0.695
sum 15.267 -20.725 -0.101 25.742
Atomic orbital electron populations
1.70104 1.08165 1.28391 1.50887 1.26142 0.95833 1.03966 0.94368
0.85358 0.78125 0.77193 0.79554 1.18568 1.21150 1.18704 1.21495
0.94056 0.90649 1.51521 0.90353 1.18815 0.93636 0.93293 0.96087
1.30367 1.12591 1.16094 1.12421 1.04866 0.75190 0.76682 0.72707
1.93482 1.72866 1.85738 1.46782 1.93481 1.72688 1.85746 1.46427
1.57823 1.58331 1.54269 1.12808 1.21663 1.01989 0.93586 0.84321
1.21820 1.01089 0.95619 0.97379 1.21128 1.04895 0.86107 0.96927
0.83993 1.23562 0.73457 0.91610 0.78118 1.90648 1.41925 1.73127
1.37345 1.84495 1.72619 1.27465 1.47555 1.21109 0.99557 0.94039
0.94752 0.92977 1.21807 0.96755 1.02270 0.95912 1.21584 0.95059
0.96032 1.02635 1.21539 1.01766 0.95158 0.97081 1.22035 0.93075
1.01981 1.00113 1.21250 0.96307 0.93078 0.84726 0.89223 0.92422
0.97716 0.97956 0.83600 0.84061 0.88852 0.87093 0.86411 0.92814
0.71236 0.92343 0.89858 0.91027 0.91058 0.92261 0.89713 0.88798
0.90739
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16
2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16
3 Si 0.97 42.84 29.54 68.60 2.03 44.87 16
4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16
5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16
6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16
7 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16
8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16
9 C 0.02 1.08 4.98 29.85 0.15 1.22 16
10 C -0.58 -21.56 6.12 71.98 0.44 -21.12 16
11 S 2.61 94.23 5.46 -56.49 -0.31 93.92 16
12 O -1.00 -42.98 16.63 -127.65 -2.12 -45.10 16
13 O -0.99 -41.32 16.60 -127.65 -2.12 -43.44 16
14 N -0.99 -24.61 2.92 -491.02 -1.43 -26.05 16
15 C 0.11 1.96 5.93 86.20 0.51 2.47 16
16 C -0.12 -1.91 5.28 30.53 0.16 -1.75 16
17 C -0.07 -1.11 1.57 -11.54 -0.02 -1.13 16
18 H 0.14 1.45 5.04 -2.39 -0.01 1.44 16
19 C 0.49 8.15 7.34 71.24 0.52 8.68 16
20 O -0.54 -12.54 14.25 21.97 0.31 -12.23 16
21 O -0.51 -5.36 13.32 -51.43 -0.68 -6.04 16
22 C -0.07 -1.55 1.68 -10.91 -0.02 -1.57 16
23 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16
24 C -0.13 -2.45 5.10 30.48 0.16 -2.29 16
25 C -0.12 -1.54 5.67 30.60 0.17 -1.37 16
26 C -0.12 -1.57 5.92 30.58 0.18 -1.39 16
27 C -0.13 -2.03 4.94 30.59 0.15 -1.88 16
28 C 0.15 3.35 2.63 44.91 0.12 3.47 16
29 H 0.09 2.37 6.93 -2.38 -0.02 2.35 16
30 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16
32 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16
33 H 0.15 4.57 8.14 -2.39 -0.02 4.55 16
34 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16
35 H 0.09 1.90 6.87 -2.39 -0.02 1.88 16
36 H 0.11 1.19 7.29 -2.38 -0.02 1.17 16
37 H 0.12 1.23 8.10 -2.39 -0.02 1.21 16
38 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16
39 H 0.43 1.27 9.10 -74.06 -0.67 0.59 16
40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
41 H 0.08 1.78 5.27 -2.39 -0.01 1.77 16
42 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16
43 H 0.07 0.77 6.62 -2.39 -0.02 0.75 16
44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16
45 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16
46 H 0.09 0.99 5.43 -2.39 -0.01 0.98 16
47 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
Total: -1.00 -80.95 371.29 -0.50 -81.46
By element:
Atomic # 1 Polarization: 14.91 SS G_CDS: 0.32 Total: 15.23 kcal
Atomic # 6 Polarization: -49.01 SS G_CDS: 3.22 Total: -45.79 kcal
Atomic # 7 Polarization: -81.73 SS G_CDS: -1.15 Total: -82.88 kcal
Atomic # 8 Polarization: -102.19 SS G_CDS: -4.61 Total: -106.81 kcal
Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal
Atomic # 16 Polarization: 94.23 SS G_CDS: -0.31 Total: 93.92 kcal
Total: -80.95 -0.50 -81.46 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601065837.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -127.824 kcal
(2) G-P(sol) polarization free energy of solvation -80.954 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.778 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) -209.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds