Wall clock time and date at job start Wed Apr 1 2020 03:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47395 * 2 1 4 4 C 1.50706 * 109.52150 * 59.91968 * 3 2 1 5 5 O 1.20827 * 119.99624 * 120.08154 * 4 3 2 6 6 O 1.34221 * 120.00407 * 300.08474 * 4 3 2 7 7 C 1.53037 * 109.49972 * 299.84308 * 3 2 1 8 8 C 1.53038 * 109.53598 * 301.41215 * 7 3 2 9 9 C 1.53632 * 109.24247 * 298.50894 * 8 7 3 10 10 N 1.46923 * 108.54195 * 54.85376 * 9 8 7 11 11 S 1.65602 * 120.62927 * 126.36823 * 10 9 8 12 12 O 1.42096 * 104.27820 * 153.65091 * 11 10 9 13 13 O 1.42100 * 104.27348 * 25.79584 * 11 10 9 14 14 C 1.81402 * 104.44976 * 269.72537 * 11 10 9 15 15 C 1.52999 * 109.46773 * 172.46364 * 14 11 10 16 16 C 1.50704 * 115.55266 * 39.79813 * 15 14 11 17 17 H 1.08004 * 119.99712 * 264.78620 * 16 15 14 18 18 C 1.37878 * 119.99966 * 84.78499 * 16 15 14 19 19 N 1.31514 * 120.00235 * 353.94707 * 18 16 15 20 20 Si 1.86793 * 119.99730 * 173.94942 * 18 16 15 21 21 H 1.48506 * 109.47289 * 89.99709 * 20 18 16 22 22 H 1.48504 * 109.47474 * 209.99768 * 20 18 16 23 23 H 1.48499 * 109.47529 * 330.00141 * 20 18 16 24 24 C 1.52998 * 117.49781 * 254.08558 * 15 14 11 25 25 C 1.53002 * 60.00314 * 252.51323 * 24 15 14 26 26 C 1.46923 * 118.74137 * 306.09930 * 10 9 8 27 27 H 1.09001 * 109.47280 * 299.99255 * 1 2 3 28 28 H 1.08997 * 109.47207 * 59.99535 * 1 2 3 29 29 H 1.09007 * 109.47191 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47191 * 240.00235 * 2 1 3 31 31 H 1.09005 * 109.47774 * 120.00310 * 2 1 3 32 32 H 0.96700 * 117.00232 * 180.02562 * 6 4 3 33 33 H 1.09001 * 109.45991 * 61.42856 * 7 3 2 34 34 H 1.09000 * 109.46496 * 181.40490 * 7 3 2 35 35 H 1.08993 * 109.50376 * 58.58656 * 8 7 3 36 36 H 1.09005 * 109.49952 * 178.68549 * 8 7 3 37 37 H 1.09004 * 109.73671 * 295.12136 * 9 8 7 38 38 H 1.08994 * 109.66682 * 174.55030 * 9 8 7 39 39 H 1.08994 * 109.47418 * 52.46487 * 14 11 10 40 40 H 1.09004 * 109.46780 * 292.46303 * 14 11 10 41 41 H 0.97003 * 120.00004 * 185.03498 * 19 18 16 42 42 H 1.08997 * 117.49925 * 0.02562 * 24 15 14 43 43 H 1.08999 * 117.49844 * 145.02875 * 24 15 14 44 44 H 1.08995 * 117.50058 * 252.51346 * 25 24 15 45 45 H 1.09001 * 117.50013 * 107.48882 * 25 24 15 46 46 H 1.08998 * 109.58980 * 173.64601 * 26 10 9 47 47 H 1.09001 * 109.58741 * 293.92896 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5367 2.1546 1.2291 5 8 2.3213 2.6156 2.0240 6 8 0.2169 2.2766 1.4409 7 6 1.5335 2.1634 -1.2513 8 6 2.0168 1.4221 -2.4999 9 6 3.5528 1.4262 -2.5284 10 7 4.0451 0.8625 -1.2640 11 16 5.1181 -0.3989 -1.2637 12 8 5.8177 -0.2634 -0.0344 13 8 5.7944 -0.2838 -2.5081 14 6 4.0734 -1.8817 -1.2416 15 6 4.9470 -3.1237 -1.4288 16 6 6.2685 -3.1041 -0.7046 17 1 7.1613 -2.7800 -1.2188 18 6 6.3378 -3.4998 0.6144 19 7 5.2360 -3.7803 1.2755 20 14 7.9965 -3.6375 1.4622 21 1 8.3395 -2.3375 2.0929 22 1 7.9332 -4.6924 2.5056 23 1 9.0357 -3.9919 0.4624 24 6 4.8959 -3.8252 -2.7875 25 6 4.2374 -4.4722 -1.5674 26 6 3.5719 1.4431 0.0000 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 -0.0579 2.7418 2.2429 33 1 0.4438 2.1858 -1.2414 34 1 1.9176 3.1833 -1.2633 35 1 1.6537 0.3947 -2.4765 36 1 1.6363 1.9227 -3.3903 37 1 3.9162 2.4479 -2.6390 38 1 3.9059 0.8184 -3.3614 39 1 3.3447 -1.8249 -2.0502 40 1 3.5521 -1.9447 -0.2864 41 1 5.2779 -3.9876 2.2222 42 1 4.2402 -3.4015 -3.5482 43 1 5.8183 -4.2725 -3.1580 44 1 4.7266 -5.3451 -1.1352 45 1 3.1482 -4.4744 -1.5253 46 1 3.9376 0.8466 0.8357 47 1 3.9389 2.4653 0.0926 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603608659.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:38 Heat of formation + Delta-G solvation = -142.784980 kcal Electronic energy + Delta-G solvation = -31371.975487 eV Core-core repulsion = 27261.566670 eV Total energy + Delta-G solvation = -4110.408817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04785 -38.57685 -36.74102 -36.31613 -36.19569 -34.96516 -34.12842 -32.05689 -31.79082 -29.96835 -28.21013 -25.50928 -25.14111 -24.64626 -23.11351 -21.78877 -21.20520 -19.70005 -19.21880 -18.12581 -18.01630 -17.28735 -16.42762 -16.31964 -15.97229 -15.52188 -15.18687 -14.89579 -14.65641 -14.33423 -13.95104 -13.90345 -13.70791 -13.44041 -13.33992 -13.08071 -12.86331 -12.55770 -12.21900 -11.91618 -11.78274 -11.68589 -11.49354 -11.30563 -11.17500 -11.11791 -11.00509 -10.93285 -10.88675 -10.79058 -10.72786 -10.51301 -10.42711 -10.34898 -10.24981 -10.08476 -9.70009 -8.99628 -8.75531 -8.52877 -8.09791 -6.15995 -4.30955 1.10758 2.10874 2.82530 3.33789 3.41606 3.44343 3.48000 4.32828 4.40673 4.52307 4.61133 4.76468 4.84112 4.94509 5.01201 5.12253 5.14383 5.20731 5.24250 5.32724 5.40010 5.46109 5.59441 5.67677 5.69854 5.76978 5.78191 5.84490 5.92705 5.97115 6.04493 6.11207 6.15352 6.25569 6.32097 6.35580 6.37688 6.40779 6.60848 6.68962 6.83330 6.96116 7.18066 7.39361 7.78513 7.78616 8.18528 8.78084 9.46604 10.91322 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.004673 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.847533 B = 5990.441863 C = 6389.173210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C -0.063 4.063 4 C 0.492 3.508 5 O -0.509 6.509 6 O -0.507 6.507 7 C -0.104 4.104 8 C -0.137 4.137 9 C 0.117 3.883 10 N -1.011 6.011 11 S 2.620 3.380 12 O -0.938 6.938 13 O -0.969 6.969 14 C -0.560 4.560 15 C 0.051 3.949 16 C -0.544 4.544 17 H 0.068 0.932 18 C 0.098 3.902 19 N -0.865 5.865 20 Si 0.888 3.112 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.204 4.204 25 C -0.143 4.143 26 C 0.143 3.857 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.403 0.597 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.265 0.735 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.102 0.898 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 10.810 -4.265 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.162 4.162 3 C -0.066 4.066 4 C 0.334 3.666 5 O -0.396 6.396 6 O -0.319 6.319 7 C -0.142 4.142 8 C -0.176 4.176 9 C -0.009 4.009 10 N -0.846 5.846 11 S 2.718 3.282 12 O -0.928 6.928 13 O -0.960 6.960 14 C -0.692 4.692 15 C 0.049 3.951 16 C -0.582 4.582 17 H 0.087 0.913 18 C -0.109 4.109 19 N -0.499 5.499 20 Si 0.714 3.286 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.241 4.241 25 C -0.182 4.182 26 C 0.016 3.984 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.531 10.746 -4.246 17.045 hybrid contribution -0.160 -0.092 1.209 1.223 sum -12.690 10.655 -3.037 16.846 Atomic orbital electron populations 1.22062 0.94527 1.01918 1.03314 1.21788 0.97272 0.92759 1.04369 1.21012 0.97561 0.96844 0.91141 1.23319 0.79929 0.76388 0.86989 1.90747 1.56878 1.45641 1.46383 1.84655 1.26220 1.72528 1.48516 1.21549 1.01501 0.98786 0.92331 1.22092 0.96196 1.01820 0.97498 1.21487 0.93358 1.00267 0.85784 1.58371 1.64983 1.50895 1.10355 1.04907 0.74774 0.74316 0.74231 1.93538 1.68850 1.84861 1.45516 1.93469 1.70807 1.86035 1.45674 1.30093 1.12620 1.17824 1.08711 1.18162 0.94762 0.87658 0.94488 1.20595 0.91991 1.48803 0.96790 0.91344 1.24886 0.96790 0.92214 0.97046 1.69944 1.27186 1.43994 1.08814 0.86627 0.84117 0.78360 0.79483 1.19521 1.20963 1.19398 1.23117 1.02014 1.07486 0.91504 1.22520 0.96632 0.98725 1.00320 1.21153 0.89490 1.01216 0.86502 0.90554 0.92362 0.92572 0.89431 0.90708 0.73864 0.90064 0.91319 0.90586 0.90287 0.91256 0.88833 0.88664 0.85391 0.92554 0.91309 0.89736 0.89657 0.91662 0.87939 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.04 37.16 0.34 -1.25 16 2 C -0.12 -1.51 4.21 -26.74 -0.11 -1.62 16 3 C -0.06 -0.75 0.51 -155.54 -0.08 -0.83 16 4 C 0.49 5.92 6.86 36.01 0.25 6.16 16 5 O -0.51 -7.82 16.68 -18.75 -0.31 -8.13 16 6 O -0.51 -4.27 10.23 -39.23 -0.40 -4.67 16 7 C -0.10 -0.97 4.26 -26.69 -0.11 -1.09 16 8 C -0.14 -1.27 5.75 -26.38 -0.15 -1.42 16 9 C 0.12 1.42 6.34 -3.48 -0.02 1.40 16 10 N -1.01 -15.88 2.65 -113.27 -0.30 -16.18 16 11 S 2.62 55.25 4.55 -107.50 -0.49 54.76 16 12 O -0.94 -23.51 15.95 -57.54 -0.92 -24.43 16 13 O -0.97 -22.18 16.71 -57.54 -0.96 -23.14 16 14 C -0.56 -11.41 5.16 37.16 0.19 -11.22 16 15 C 0.05 1.23 1.65 -155.66 -0.26 0.98 16 16 C -0.54 -14.89 6.95 -34.44 -0.24 -15.13 16 17 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 18 C 0.10 2.70 5.39 -17.82 -0.10 2.60 16 19 N -0.87 -23.78 12.93 55.43 0.72 -23.06 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.20 -4.34 9.88 -26.73 -0.26 -4.61 16 25 C -0.14 -3.19 9.47 -26.73 -0.25 -3.45 16 26 C 0.14 2.15 4.34 -3.71 -0.02 2.14 16 27 H 0.08 0.73 5.33 -51.93 -0.28 0.45 16 28 H 0.06 0.50 6.47 -51.93 -0.34 0.16 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.09 1.07 4.35 -51.93 -0.23 0.85 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.40 1.81 9.10 45.56 0.41 2.23 16 33 H 0.08 0.65 6.46 -51.93 -0.34 0.32 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.71 6.33 -51.93 -0.33 0.38 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 1.17 7.09 -51.93 -0.37 0.80 16 39 H 0.09 1.58 7.73 -51.93 -0.40 1.17 16 40 H 0.13 2.64 7.68 -51.92 -0.40 2.24 16 41 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 42 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 43 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.10 1.78 7.10 -51.93 -0.37 1.41 16 47 H 0.08 1.13 7.96 -51.93 -0.41 0.72 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -34.27 375.35 -9.25 -43.52 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.39 Total: 6.10 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: -0.83 Total: -27.33 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.42 Total: -39.24 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -2.59 Total: -60.37 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.49 Total: 54.76 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.27 -9.25 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603608659.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.264 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds