Wall clock time and date at job start Wed Apr 1 2020 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48503 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47121 * 299.99640 * 3 2 1 6 6 H 1.48496 * 109.47089 * 60.00137 * 3 2 1 7 7 C 1.37880 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99729 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50409 * 60.05932 * 9 7 2 11 11 C 1.53048 * 109.49599 * 299.99353 * 9 7 2 12 12 C 1.53037 * 109.53784 * 178.65490 * 11 9 7 13 13 C 1.53190 * 109.31284 * 61.36613 * 12 11 9 14 14 N 1.46928 * 108.77812 * 305.36453 * 13 12 11 15 15 S 1.65596 * 120.63279 * 233.58781 * 14 13 12 16 16 O 1.42102 * 104.27916 * 20.41738 * 15 14 13 17 17 O 1.42103 * 104.27938 * 148.27400 * 15 14 13 18 18 C 1.81405 * 104.44871 * 264.34463 * 15 14 13 19 19 H 1.08997 * 109.46670 * 292.67739 * 18 15 14 20 20 C 1.52998 * 109.46940 * 52.68024 * 18 15 14 21 21 C 1.52994 * 109.46854 * 179.97438 * 20 18 15 22 22 C 1.53005 * 109.47731 * 300.00166 * 21 20 18 23 23 C 1.53005 * 109.46821 * 59.99830 * 22 21 20 24 24 C 1.53001 * 109.46944 * 300.00109 * 23 22 21 25 25 H 1.08995 * 109.47509 * 300.00461 * 24 23 22 26 26 C 1.50703 * 109.46775 * 179.97438 * 24 23 22 27 27 O 1.20824 * 120.00165 * 240.00091 * 26 24 23 28 28 O 1.34225 * 120.00004 * 60.00471 * 26 24 23 29 29 C 1.46928 * 118.73486 * 53.85655 * 14 13 12 30 30 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.45695 * 58.63204 * 11 9 7 32 32 H 1.08999 * 109.44924 * 298.66833 * 11 9 7 33 33 H 1.09003 * 109.49521 * 301.41805 * 12 11 9 34 34 H 1.09003 * 109.52518 * 181.33384 * 12 11 9 35 35 H 1.09005 * 109.58698 * 185.57834 * 13 12 11 36 36 H 1.08992 * 109.70482 * 65.22311 * 13 12 11 37 37 H 1.08993 * 109.47277 * 300.00215 * 20 18 15 38 38 H 1.09001 * 109.47000 * 60.00063 * 20 18 15 39 39 H 1.09000 * 109.47301 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.47108 * 60.00322 * 21 20 18 41 41 H 1.09001 * 109.46953 * 300.00251 * 22 21 20 42 42 H 1.08989 * 109.47577 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47128 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47013 * 60.00458 * 23 22 21 45 45 H 0.96701 * 117.00685 * 179.97438 * 28 26 24 46 46 H 1.09004 * 109.58532 * 65.93426 * 29 14 13 47 47 H 1.09004 * 109.58376 * 186.35364 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6252 -2.5581 -0.8900 11 6 0.3704 -2.5806 1.2497 12 6 -0.4206 -3.8906 1.2339 13 6 0.5549 -5.0716 1.2521 14 7 1.4985 -4.9230 0.1357 15 16 1.7165 -6.1507 -0.9540 16 8 0.5482 -6.9488 -0.8212 17 8 2.0154 -5.4871 -2.1744 18 6 3.1714 -7.0453 -0.3428 19 1 4.0531 -6.4112 -0.4355 20 6 2.9620 -7.4162 1.1267 21 6 4.1888 -8.1712 1.6419 22 6 4.3872 -9.4450 0.8177 23 6 4.5966 -9.0740 -0.6518 24 6 3.3697 -8.3191 -1.1671 25 1 2.4877 -8.9527 -1.0744 26 6 3.5763 -7.9532 -2.6143 27 8 3.5656 -6.7930 -2.9517 28 8 3.7720 -8.9161 -3.5287 29 6 2.2494 -3.6666 0.0081 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3216 -1.7386 1.2617 32 1 0.9990 -2.5467 2.1396 33 1 -1.0305 -3.9364 0.3316 34 1 -1.0652 -3.9376 2.1116 35 1 0.0016 -6.0043 1.1411 36 1 1.1024 -5.0816 2.1944 37 1 2.8203 -6.5089 1.7137 38 1 2.0802 -8.0502 1.2192 39 1 4.0399 -8.4351 2.6889 40 1 5.0708 -7.5375 1.5493 41 1 3.5052 -10.0787 0.9103 42 1 5.2615 -9.9826 1.1845 43 1 4.7375 -9.9815 -1.2391 44 1 5.4787 -8.4403 -0.7445 45 1 3.8995 -8.6328 -4.4444 46 1 2.9322 -3.5617 0.8513 47 1 2.8146 -3.6718 -0.9240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:41 Heat of formation + Delta-G solvation = -175.204887 kcal Electronic energy + Delta-G solvation = -30836.468521 eV Core-core repulsion = 26724.653871 eV Total energy + Delta-G solvation = -4111.814650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.82011 -38.35642 -37.63106 -36.78833 -36.24813 -35.43611 -33.28512 -31.76878 -31.46063 -30.90121 -29.99889 -25.08077 -24.98693 -23.51560 -23.35576 -21.63856 -21.51410 -20.26011 -19.41011 -18.30520 -18.14456 -17.25527 -17.23097 -16.52183 -16.06526 -15.68423 -15.46391 -14.84493 -14.60395 -14.40909 -14.13171 -13.82877 -13.77644 -13.42431 -13.18062 -12.98564 -12.86402 -12.71242 -12.47738 -12.09478 -11.97433 -11.87689 -11.81697 -11.64717 -11.48135 -11.37902 -11.14873 -11.03055 -10.93752 -10.86268 -10.78868 -10.64631 -10.51539 -10.14756 -9.96900 -9.88043 -9.72390 -9.30602 -8.76894 -8.38469 -8.08984 -5.96163 -4.03282 0.55295 1.96442 2.66951 3.02673 3.31726 3.39942 3.43483 3.87093 4.13794 4.21650 4.40870 4.45637 4.55480 4.72281 4.87873 4.90069 4.94726 5.02445 5.11017 5.30564 5.34857 5.39474 5.42955 5.55753 5.67194 5.70825 5.73897 5.78400 5.82949 5.86694 6.02078 6.08541 6.27689 6.32569 6.39555 6.54104 6.67842 6.69095 6.95752 7.08425 7.29159 7.50467 7.65743 7.76195 8.03511 8.15308 8.44757 9.00386 9.61055 11.09298 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.003618 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.124136 B = 7738.087159 C = 8135.140503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.043 3.957 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.131 4.131 13 C 0.121 3.879 14 N -0.989 5.989 15 S 2.597 3.403 16 O -0.968 6.968 17 O -0.916 6.916 18 C -0.591 4.591 19 H 0.143 0.857 20 C -0.102 4.102 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.101 4.101 24 C -0.062 4.062 25 H 0.121 0.879 26 C 0.438 3.562 27 O -0.457 6.457 28 O -0.514 6.514 29 C 0.125 3.875 30 H 0.259 0.741 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.413 0.587 46 H 0.055 0.945 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 -20.945 2.783 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.023 3.977 10 H 0.051 0.949 11 C -0.147 4.147 12 C -0.170 4.170 13 C -0.004 4.004 14 N -0.829 5.829 15 S 2.689 3.311 16 O -0.958 6.958 17 O -0.906 6.906 18 C -0.697 4.697 19 H 0.161 0.839 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.157 4.157 23 C -0.139 4.139 24 C -0.082 4.082 25 H 0.139 0.861 26 C 0.277 3.723 27 O -0.341 6.341 28 O -0.327 6.327 29 C 0.001 3.999 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.273 0.727 46 H 0.073 0.927 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.300 -20.784 2.322 22.151 hybrid contribution 1.100 1.112 -0.232 1.581 sum 8.400 -19.672 2.089 21.492 Atomic orbital electron populations 1.69892 1.05881 1.26273 1.50619 1.24942 0.94837 0.99024 0.95072 0.86545 0.80127 0.83847 0.77493 1.19797 1.21067 1.21132 1.21140 0.92978 0.90376 1.50716 0.92455 1.19007 0.92906 0.90728 0.95102 0.94924 1.21586 0.99367 0.95400 0.98388 1.21940 0.97567 0.96576 1.00908 1.21452 0.90875 0.99816 0.88267 1.57666 1.52813 1.27952 1.44422 1.05567 0.75795 0.74667 0.75022 1.93527 1.43882 1.71521 1.86882 1.93700 1.84946 1.71431 1.40478 1.30703 1.25317 1.08055 1.05584 0.83885 1.21354 0.99984 1.02255 0.90393 1.21501 0.97919 0.96493 0.99379 1.21572 1.02468 0.97831 0.93868 1.21464 0.95243 1.00109 0.97083 1.20719 1.03964 0.97183 0.86335 0.86129 1.23715 0.74967 0.84287 0.89314 1.91152 1.42683 1.19011 1.81267 1.84442 1.84041 1.41658 1.22544 1.21904 0.94856 0.82592 1.00561 0.93069 0.88770 0.94671 0.92349 0.92634 0.90206 0.92324 0.89249 0.90185 0.91008 0.91385 0.91245 0.91040 0.89991 0.90899 0.72730 0.92692 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 11.31 55.43 0.63 -24.73 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.51 -13.96 8.57 -34.44 -0.29 -14.25 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.07 2.27 -91.42 -0.21 0.86 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 12 C -0.13 -2.50 6.08 -26.61 -0.16 -2.66 16 13 C 0.12 1.99 5.74 -3.71 -0.02 1.97 16 14 N -0.99 -17.88 2.63 -113.27 -0.30 -18.18 16 15 S 2.60 45.30 4.40 -107.50 -0.47 44.83 16 16 O -0.97 -18.05 16.44 -57.54 -0.95 -18.99 16 17 O -0.92 -19.87 13.31 -67.42 -0.90 -20.77 16 18 C -0.59 -7.20 1.99 -26.73 -0.05 -7.26 16 19 H 0.14 1.69 8.10 -51.93 -0.42 1.27 16 20 C -0.10 -0.99 4.95 -26.73 -0.13 -1.12 16 21 C -0.11 -0.86 5.92 -26.73 -0.16 -1.02 16 22 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 23 C -0.10 -0.79 5.14 -26.73 -0.14 -0.92 16 24 C -0.06 -0.66 2.17 -91.77 -0.20 -0.86 16 25 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 26 C 0.44 5.56 7.30 36.01 0.26 5.82 16 27 O -0.46 -7.74 12.98 -26.99 -0.35 -8.09 16 28 O -0.51 -4.81 13.33 -39.24 -0.52 -5.33 16 29 C 0.12 2.58 5.66 -3.49 -0.02 2.56 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.21 6.72 -51.93 -0.35 0.86 16 36 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 37 H 0.09 0.87 6.80 -51.93 -0.35 0.52 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.38 8.14 -51.94 -0.42 -0.04 16 43 H 0.08 0.55 8.11 -51.93 -0.42 0.12 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.41 2.29 9.10 45.56 0.41 2.70 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.65 7.03 -51.93 -0.37 1.28 16 LS Contribution 370.71 15.07 5.59 5.59 Total: -1.00 -35.23 370.71 -10.63 -45.86 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.83 Total: 2.43 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.51 Total: -18.85 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.33 Total: -42.91 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -2.72 Total: -53.18 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 45.30 SS G_CDS: -0.47 Total: 44.83 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.23 -10.63 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.343 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds