Wall clock time and date at job start Wed Apr 1 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48503 * 109.46893 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47121 * 299.99640 * 3 2 1 6 6 H 1.48496 * 109.47089 * 60.00137 * 3 2 1 7 7 C 1.37880 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00039 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99729 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50409 * 60.05932 * 9 7 2 11 11 C 1.53048 * 109.49599 * 299.99353 * 9 7 2 12 12 C 1.53037 * 109.53784 * 178.65490 * 11 9 7 13 13 C 1.53190 * 109.31284 * 61.36613 * 12 11 9 14 14 N 1.46928 * 108.77812 * 305.36453 * 13 12 11 15 15 S 1.65596 * 120.63279 * 233.58781 * 14 13 12 16 16 O 1.42102 * 104.27916 * 20.41738 * 15 14 13 17 17 O 1.42103 * 104.27938 * 148.27400 * 15 14 13 18 18 C 1.81405 * 104.44871 * 264.34463 * 15 14 13 19 19 H 1.08997 * 109.46670 * 292.67739 * 18 15 14 20 20 C 1.52998 * 109.46940 * 52.68024 * 18 15 14 21 21 C 1.52994 * 109.46854 * 179.97438 * 20 18 15 22 22 C 1.53005 * 109.47731 * 300.00166 * 21 20 18 23 23 C 1.53005 * 109.46821 * 59.99830 * 22 21 20 24 24 C 1.53001 * 109.46944 * 300.00109 * 23 22 21 25 25 H 1.08995 * 109.47509 * 300.00461 * 24 23 22 26 26 C 1.50703 * 109.46775 * 179.97438 * 24 23 22 27 27 O 1.20824 * 120.00165 * 240.00091 * 26 24 23 28 28 O 1.34225 * 120.00004 * 60.00471 * 26 24 23 29 29 C 1.46928 * 118.73486 * 53.85655 * 14 13 12 30 30 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.45695 * 58.63204 * 11 9 7 32 32 H 1.08999 * 109.44924 * 298.66833 * 11 9 7 33 33 H 1.09003 * 109.49521 * 301.41805 * 12 11 9 34 34 H 1.09003 * 109.52518 * 181.33384 * 12 11 9 35 35 H 1.09005 * 109.58698 * 185.57834 * 13 12 11 36 36 H 1.08992 * 109.70482 * 65.22311 * 13 12 11 37 37 H 1.08993 * 109.47277 * 300.00215 * 20 18 15 38 38 H 1.09001 * 109.47000 * 60.00063 * 20 18 15 39 39 H 1.09000 * 109.47301 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.47108 * 60.00322 * 21 20 18 41 41 H 1.09001 * 109.46953 * 300.00251 * 22 21 20 42 42 H 1.08989 * 109.47577 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47128 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47013 * 60.00458 * 23 22 21 45 45 H 0.96701 * 117.00685 * 179.97438 * 28 26 24 46 46 H 1.09004 * 109.58532 * 65.93426 * 29 14 13 47 47 H 1.09004 * 109.58376 * 186.35364 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6252 -2.5581 -0.8900 11 6 0.3704 -2.5806 1.2497 12 6 -0.4206 -3.8906 1.2339 13 6 0.5549 -5.0716 1.2521 14 7 1.4985 -4.9230 0.1357 15 16 1.7165 -6.1507 -0.9540 16 8 0.5482 -6.9488 -0.8212 17 8 2.0154 -5.4871 -2.1744 18 6 3.1714 -7.0453 -0.3428 19 1 4.0531 -6.4112 -0.4355 20 6 2.9620 -7.4162 1.1267 21 6 4.1888 -8.1712 1.6419 22 6 4.3872 -9.4450 0.8177 23 6 4.5966 -9.0740 -0.6518 24 6 3.3697 -8.3191 -1.1671 25 1 2.4877 -8.9527 -1.0744 26 6 3.5763 -7.9532 -2.6143 27 8 3.5656 -6.7930 -2.9517 28 8 3.7720 -8.9161 -3.5287 29 6 2.2494 -3.6666 0.0081 30 1 -0.4850 0.8401 -0.0004 31 1 -0.3216 -1.7386 1.2617 32 1 0.9990 -2.5467 2.1396 33 1 -1.0305 -3.9364 0.3316 34 1 -1.0652 -3.9376 2.1116 35 1 0.0016 -6.0043 1.1411 36 1 1.1024 -5.0816 2.1944 37 1 2.8203 -6.5089 1.7137 38 1 2.0802 -8.0502 1.2192 39 1 4.0399 -8.4351 2.6889 40 1 5.0708 -7.5375 1.5493 41 1 3.5052 -10.0787 0.9103 42 1 5.2615 -9.9826 1.1845 43 1 4.7375 -9.9815 -1.2391 44 1 5.4787 -8.4403 -0.7445 45 1 3.8995 -8.6328 -4.4444 46 1 2.9322 -3.5617 0.8513 47 1 2.8146 -3.6718 -0.9240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:40 Heat of formation + Delta-G solvation = -199.877868 kcal Electronic energy + Delta-G solvation = -30837.538422 eV Core-core repulsion = 26724.653871 eV Total energy + Delta-G solvation = -4112.884551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.75957 -39.33573 -39.05336 -38.16550 -37.24381 -36.87146 -35.20629 -32.84795 -32.45154 -32.00189 -31.78834 -27.03994 -25.84829 -25.07837 -24.09582 -23.32357 -22.32179 -21.21376 -20.87842 -19.67567 -19.06434 -18.78780 -18.31146 -18.06811 -17.52646 -16.90199 -16.64084 -16.50237 -15.62341 -15.42989 -15.15951 -15.00415 -14.93443 -14.77264 -14.55263 -14.40359 -14.25026 -13.82894 -13.72866 -13.52364 -13.22994 -13.11374 -12.90050 -12.77054 -12.74089 -12.68816 -12.62167 -12.48315 -12.31198 -12.19780 -11.87067 -11.82671 -11.78539 -11.56064 -11.46890 -11.25727 -11.05673 -10.92066 -10.74567 -10.41396 -9.67351 -8.06601 -6.22139 -0.75920 1.00677 1.41352 1.43306 1.54674 1.64801 1.87915 2.44729 2.81392 3.05554 3.15539 3.19964 3.63230 3.68354 3.86079 3.97874 4.12369 4.15352 4.26055 4.28690 4.33556 4.36487 4.39825 4.57955 4.63729 4.71166 4.82339 4.85268 4.88679 4.92364 4.97255 5.09597 5.11516 5.18205 5.28653 5.29929 5.32266 5.36769 5.49898 5.52698 5.56904 5.66342 5.77162 6.00329 6.19185 6.38672 6.82073 6.90400 7.45914 8.97624 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016152 B = 0.003618 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.124136 B = 7738.087159 C = 8135.140503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.035 3.965 10 H -0.023 1.023 11 C -0.101 4.101 12 C -0.130 4.130 13 C 0.120 3.880 14 N -0.996 5.996 15 S 2.584 3.416 16 O -0.989 6.989 17 O -0.973 6.973 18 C -0.553 4.553 19 H 0.149 0.851 20 C -0.108 4.108 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.068 4.068 25 H 0.136 0.864 26 C 0.437 3.563 27 O -0.508 6.508 28 O -0.502 6.502 29 C 0.139 3.861 30 H 0.259 0.741 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.028 0.972 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.073 0.927 45 H 0.429 0.571 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.267 -23.587 5.203 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.571 4.571 8 H 0.079 0.921 9 C 0.015 3.985 10 H -0.005 1.005 11 C -0.139 4.139 12 C -0.169 4.169 13 C -0.004 4.004 14 N -0.834 5.834 15 S 2.684 3.316 16 O -0.980 6.980 17 O -0.963 6.963 18 C -0.666 4.666 19 H 0.167 0.833 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.134 4.134 24 C -0.089 4.089 25 H 0.153 0.847 26 C 0.278 3.722 27 O -0.396 6.396 28 O -0.316 6.316 29 C 0.015 3.985 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.091 0.909 45 H 0.291 0.709 46 H 0.100 0.900 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.496 -23.418 4.714 25.706 hybrid contribution 0.408 1.812 -1.072 2.144 sum 9.904 -21.606 3.643 24.045 Atomic orbital electron populations 1.70059 1.07364 1.26977 1.51389 1.25772 0.95647 1.02543 0.94792 0.85519 0.79242 0.79525 0.77424 1.18733 1.21346 1.20233 1.21544 0.93356 0.91691 1.50506 0.92125 1.18984 0.93486 0.92254 0.93783 1.00456 1.21368 0.98725 0.96220 0.97583 1.21904 0.98047 0.96014 1.00909 1.21635 0.90544 0.98873 0.89371 1.57534 1.53557 1.27599 1.44752 1.05662 0.77109 0.74671 0.74190 1.93484 1.46245 1.71322 1.86925 1.93637 1.85979 1.73022 1.43667 1.30315 1.20654 1.07963 1.07657 0.83313 1.21573 1.01935 1.03164 0.87936 1.21535 0.96428 0.96530 1.00536 1.21625 1.03931 0.97658 0.92407 1.21537 0.93281 1.00204 0.98347 1.20994 1.06366 0.96635 0.84895 0.84673 1.24202 0.73584 0.83834 0.90548 1.91159 1.45209 1.21087 1.82166 1.84404 1.83165 1.40495 1.23507 1.21518 0.93919 0.82269 1.00837 0.93151 0.92434 0.93432 0.95311 0.89581 0.88533 0.88370 0.88929 0.89146 0.89030 0.91306 0.90278 0.88974 0.88322 0.90860 0.70865 0.90048 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 11.31 21.45 0.24 -54.48 16 2 C 0.01 0.62 5.30 84.66 0.45 1.07 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -29.87 8.57 25.60 0.22 -29.65 16 8 H 0.06 3.27 7.74 -2.92 -0.02 3.24 16 9 C 0.03 1.83 2.27 -11.31 -0.03 1.81 16 10 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 11 C -0.10 -4.75 4.96 30.62 0.15 -4.60 16 12 C -0.13 -4.99 6.08 30.67 0.19 -4.81 16 13 C 0.12 3.76 5.74 86.36 0.50 4.25 16 14 N -1.00 -36.05 2.63 -512.28 -1.35 -37.40 16 15 S 2.58 91.23 4.40 -56.49 -0.25 90.98 16 16 O -0.99 -36.99 16.44 -127.65 -2.10 -39.09 16 17 O -0.97 -44.77 13.31 -118.20 -1.57 -46.35 16 18 C -0.55 -12.44 1.99 30.60 0.06 -12.38 16 19 H 0.15 3.28 8.10 -2.39 -0.02 3.26 16 20 C -0.11 -1.70 4.95 30.59 0.15 -1.55 16 21 C -0.11 -1.15 5.92 30.59 0.18 -0.97 16 22 C -0.12 -0.98 5.92 30.60 0.18 -0.80 16 23 C -0.10 -1.11 5.14 30.60 0.16 -0.96 16 24 C -0.07 -1.30 2.17 -11.54 -0.02 -1.32 16 25 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 26 C 0.44 10.72 7.30 71.24 0.52 11.24 16 27 O -0.51 -17.68 12.98 29.85 0.39 -17.30 16 28 O -0.50 -8.60 13.33 -51.37 -0.68 -9.29 16 29 C 0.14 5.89 5.66 86.51 0.49 6.38 16 30 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.06 3.13 6.04 -2.39 -0.01 3.11 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.10 2.73 6.72 -2.38 -0.02 2.71 16 36 H 0.10 2.34 7.84 -2.39 -0.02 2.32 16 37 H 0.09 1.44 6.80 -2.39 -0.02 1.43 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.10 0.89 8.11 -2.39 -0.02 0.87 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.43 4.31 9.10 -74.06 -0.67 3.64 16 46 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 47 H 0.06 2.72 7.03 -2.38 -0.02 2.71 16 Total: -1.00 -82.88 370.71 0.19 -82.69 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.30 Total: 16.09 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.19 Total: -32.27 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -1.11 Total: -91.88 kcal Atomic # 8 Polarization: -108.05 SS G_CDS: -3.97 Total: -112.02 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 91.23 SS G_CDS: -0.25 Total: 90.98 kcal Total: -82.88 0.19 -82.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.192 kcal (2) G-P(sol) polarization free energy of solvation -82.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds