Wall clock time and date at job start Wed Apr 1 2020 03:21:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86795 * 120.00339 * 2 1
4 4 H 1.48504 * 109.46990 * 239.99806 * 3 2 1
5 5 H 1.48495 * 109.47144 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47470 * 119.99939 * 3 2 1
7 7 C 1.37874 * 119.99514 * 179.97438 * 2 1 3
8 8 H 1.08006 * 120.00223 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00190 * 359.97438 * 7 2 1
10 10 N 1.46498 * 109.47248 * 180.02562 * 9 7 2
11 11 C 1.46502 * 120.00227 * 275.00280 * 10 9 7
12 12 C 1.53002 * 109.46914 * 295.05561 * 11 10 9
13 13 C 1.52993 * 117.49842 * 242.76234 * 12 11 10
14 14 C 1.52994 * 60.00060 * 252.50906 * 13 12 11
15 15 S 1.65600 * 119.99947 * 94.99952 * 10 9 7
16 16 O 1.42100 * 104.27811 * 328.90646 * 15 10 9
17 17 O 1.42111 * 104.27624 * 201.05143 * 15 10 9
18 18 C 1.81401 * 104.44942 * 84.98056 * 15 10 9
19 19 H 1.09000 * 109.46642 * 291.90475 * 18 15 10
20 20 C 1.53003 * 109.46975 * 51.90500 * 18 15 10
21 21 C 1.52998 * 109.46949 * 180.02562 * 20 18 15
22 22 C 1.53002 * 109.47058 * 300.00394 * 21 20 18
23 23 C 1.52993 * 109.47558 * 59.99911 * 22 21 20
24 24 C 1.52998 * 109.47009 * 300.00119 * 23 22 21
25 25 H 1.08997 * 109.47423 * 299.99753 * 24 23 22
26 26 C 1.50699 * 109.47467 * 180.02562 * 24 23 22
27 27 O 1.20833 * 120.00136 * 240.00579 * 26 24 23
28 28 O 1.34233 * 120.00072 * 59.99221 * 26 24 23
29 29 H 0.96999 * 119.99554 * 359.97438 * 1 2 3
30 30 H 1.08996 * 109.46849 * 60.00280 * 9 7 2
31 31 H 1.09001 * 109.47262 * 299.99941 * 9 7 2
32 32 H 1.09003 * 109.46920 * 55.05065 * 11 10 9
33 33 H 1.08992 * 109.47148 * 175.05484 * 11 10 9
34 34 H 1.09003 * 115.54985 * 28.46830 * 12 11 10
35 35 H 1.09002 * 117.50058 * 0.02562 * 13 12 11
36 36 H 1.09007 * 117.50259 * 145.01940 * 13 12 11
37 37 H 1.09001 * 117.50133 * 252.50732 * 14 13 12
38 38 H 1.08998 * 117.49723 * 107.48966 * 14 13 12
39 39 H 1.08995 * 109.46994 * 60.00529 * 20 18 15
40 40 H 1.08993 * 109.47187 * 300.00067 * 20 18 15
41 41 H 1.08991 * 109.47218 * 180.02562 * 21 20 18
42 42 H 1.09002 * 109.47238 * 59.99764 * 21 20 18
43 43 H 1.09001 * 109.47079 * 180.02562 * 22 21 20
44 44 H 1.09000 * 109.46961 * 299.99402 * 22 21 20
45 45 H 1.09000 * 109.47400 * 59.99760 * 23 22 21
46 46 H 1.09003 * 109.47599 * 180.02562 * 23 22 21
47 47 H 0.96701 * 117.00103 * 179.97438 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2844 2.7464 -0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0017
10 7 2.2028 -3.6127 0.0027
11 6 2.7629 -4.0988 -1.2608
12 6 1.6448 -4.6948 -2.1184
13 6 1.7328 -6.1839 -2.4586
14 6 2.0027 -5.1351 -3.5393
15 16 2.6458 -4.3221 1.4320
16 8 2.5754 -3.2683 2.3828
17 8 3.8800 -4.9622 1.1378
18 6 1.3502 -5.5519 1.7477
19 1 0.4115 -5.0427 1.9662
20 6 1.1750 -6.4367 0.5118
21 6 0.0818 -7.4736 0.7778
22 6 0.4814 -8.3406 1.9735
23 6 0.6566 -7.4558 3.2093
24 6 1.7498 -6.4190 2.9432
25 1 2.6884 -6.9283 2.7251
26 6 1.9229 -5.5478 4.1607
27 8 1.7446 -4.3554 4.0807
28 8 2.2749 -6.0965 5.3341
29 1 -0.4849 0.8401 0.0004
30 1 0.6239 -2.5575 -0.8880
31 1 0.6245 -2.5563 0.8920
32 1 3.2279 -3.2701 -1.7947
33 1 3.5110 -4.8645 -1.0558
34 1 0.6528 -4.2729 -1.9571
35 1 2.5870 -6.7391 -2.0710
36 1 0.7985 -6.7420 -2.5210
37 1 1.2460 -5.0031 -4.3128
38 1 3.0347 -5.0002 -3.8631
39 1 2.1136 -6.9458 0.2934
40 1 0.8899 -5.8191 -0.3398
41 1 -0.0428 -8.1042 -0.1024
42 1 -0.8568 -6.9642 0.9961
43 1 -0.2972 -9.0796 2.1627
44 1 1.4199 -8.8501 1.7553
45 1 -0.2820 -6.9464 3.4275
46 1 0.9417 -8.0735 4.0610
47 1 2.3743 -5.4975 6.0866
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001608183026.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:21:04
Heat of formation + Delta-G solvation = -139.664891 kcal
Electronic energy + Delta-G solvation = -31239.102570 eV
Core-core repulsion = 27128.829050 eV
Total energy + Delta-G solvation = -4110.273520 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.61017 -38.32491 -37.57393 -36.43066 -36.03667 -35.12919 -34.68105 -32.30105
-31.53840 -31.09578 -27.73417 -25.43964 -24.69697 -23.30741 -22.55876 -22.12016
-21.31351 -20.22625 -19.83393 -18.12602 -17.92623 -17.26725 -16.92925 -16.44757
-16.04379 -15.63227 -15.40714 -15.02800 -14.49202 -14.42161 -14.13440 -14.09094
-13.89137 -13.55069 -13.34270 -12.82581 -12.60583 -12.49399 -12.14833 -11.83676
-11.73000 -11.62001 -11.60630 -11.48542 -11.36130 -11.26337 -11.11931 -11.02183
-10.96206 -10.85060 -10.69057 -10.58131 -10.47236 -10.30248 -10.17608 -9.94651
-9.69533 -9.60171 -9.46968 -8.35551 -7.95561 -5.98333 -4.00174 0.91391
2.17478 2.87604 3.36473 3.39678 3.42532 3.49032 4.00362 4.15334
4.41368 4.48031 4.51846 4.64597 4.78455 4.92722 5.00318 5.08085
5.09884 5.15404 5.16432 5.22717 5.32522 5.35614 5.37990 5.58813
5.64754 5.68868 5.77725 5.79603 5.80373 5.88532 5.90304 5.96769
6.04428 6.13573 6.20488 6.22544 6.28426 6.51435 6.56640 6.66457
7.25955 7.45187 7.67405 7.85893 7.99796 8.29987 9.01067 9.63781
11.10571
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010556 B = 0.005344 C = 0.004047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2651.907547 B = 5238.121895 C = 6916.233556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.899 5.899
2 C 0.061 3.939
3 Si 0.895 3.105
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.275 1.275
7 C -0.518 4.518
8 H 0.059 0.941
9 C 0.257 3.743
10 N -0.978 5.978
11 C 0.151 3.849
12 C -0.163 4.163
13 C -0.190 4.190
14 C -0.176 4.176
15 S 2.598 3.402
16 O -0.902 6.902
17 O -0.981 6.981
18 C -0.594 4.594
19 H 0.142 0.858
20 C -0.108 4.108
21 C -0.113 4.113
22 C -0.119 4.119
23 C -0.100 4.100
24 C -0.060 4.060
25 H 0.118 0.882
26 C 0.435 3.565
27 O -0.452 6.452
28 O -0.516 6.516
29 H 0.262 0.738
30 H 0.037 0.963
31 H 0.036 0.964
32 H 0.081 0.919
33 H 0.083 0.917
34 H 0.115 0.885
35 H 0.094 0.906
36 H 0.091 0.909
37 H 0.091 0.909
38 H 0.093 0.907
39 H 0.075 0.925
40 H 0.101 0.899
41 H 0.069 0.931
42 H 0.066 0.934
43 H 0.069 0.931
44 H 0.067 0.933
45 H 0.072 0.928
46 H 0.079 0.921
47 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.108 -19.278 1.496 19.336
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.140 4.140
3 Si 0.723 3.277
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.200 1.200
7 C -0.558 4.558
8 H 0.077 0.923
9 C 0.136 3.864
10 N -0.817 5.817
11 C 0.025 3.975
12 C -0.183 4.183
13 C -0.227 4.227
14 C -0.214 4.214
15 S 2.688 3.312
16 O -0.892 6.892
17 O -0.971 6.971
18 C -0.699 4.699
19 H 0.160 0.840
20 C -0.146 4.146
21 C -0.152 4.152
22 C -0.156 4.156
23 C -0.139 4.139
24 C -0.080 4.080
25 H 0.136 0.864
26 C 0.274 3.726
27 O -0.335 6.335
28 O -0.329 6.329
29 H 0.072 0.928
30 H 0.055 0.945
31 H 0.054 0.946
32 H 0.099 0.901
33 H 0.101 0.899
34 H 0.133 0.867
35 H 0.112 0.888
36 H 0.109 0.891
37 H 0.109 0.891
38 H 0.111 0.889
39 H 0.094 0.906
40 H 0.119 0.881
41 H 0.087 0.913
42 H 0.085 0.915
43 H 0.087 0.913
44 H 0.086 0.914
45 H 0.091 0.909
46 H 0.098 0.902
47 H 0.271 0.729
Dipole moment (debyes) X Y Z Total
from point charges 0.373 -18.830 1.667 18.908
hybrid contribution -0.258 1.145 0.410 1.243
sum 0.115 -17.685 2.077 17.807
Atomic orbital electron populations
1.69906 1.05934 1.27011 1.51022 1.24896 0.94864 0.99131 0.95123
0.86603 0.79607 0.82781 0.78740 1.20254 1.21289 1.20048 1.21408
0.93576 0.90543 1.50261 0.92252 1.19038 0.87052 0.82255 0.98098
1.57466 1.60048 1.44642 1.19503 1.20766 0.93206 0.98926 0.84615
1.22933 1.02313 0.95896 0.97191 1.23156 1.02933 0.92209 1.04381
1.22911 1.02429 1.03841 0.92210 1.05586 0.75534 0.75474 0.74567
1.93726 1.85715 1.49644 1.60080 1.93488 1.39948 1.79101 1.84578
1.30742 1.22839 1.14982 1.01348 0.84000 1.21613 1.00688 0.97439
0.94837 1.21487 0.98591 0.97132 0.97959 1.21562 1.02036 0.97594
0.94446 1.21452 0.97264 0.96040 0.99120 1.20697 1.03361 0.95987
0.87957 0.86394 1.23779 0.75159 0.88404 0.85273 1.91189 1.43051
1.15034 1.84261 1.84443 1.81746 1.46407 1.20326 0.92798 0.94488
0.94637 0.90113 0.89916 0.86684 0.88799 0.89086 0.89062 0.88857
0.90614 0.88071 0.91271 0.91498 0.91273 0.91412 0.90944 0.90206
0.72929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16
2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16
3 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16
4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
7 C -0.52 -14.78 9.37 -34.44 -0.32 -15.11 16
8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16
9 C 0.26 6.40 4.86 -5.19 -0.03 6.38 16
10 N -0.98 -20.19 2.26 -115.66 -0.26 -20.45 16
11 C 0.15 2.63 5.80 -4.04 -0.02 2.61 16
12 C -0.16 -2.34 3.91 -90.62 -0.35 -2.69 16
13 C -0.19 -2.10 8.04 -26.74 -0.22 -2.31 16
14 C -0.18 -2.09 10.25 -26.74 -0.27 -2.37 16
15 S 2.60 52.61 4.31 -107.50 -0.46 52.14 16
16 O -0.90 -22.79 13.75 -67.40 -0.93 -23.72 16
17 O -0.98 -20.24 16.38 -57.54 -0.94 -21.18 16
18 C -0.59 -8.85 2.00 -26.73 -0.05 -8.90 16
19 H 0.14 2.16 8.10 -51.92 -0.42 1.74 16
20 C -0.11 -1.29 4.00 -26.73 -0.11 -1.40 16
21 C -0.11 -1.06 5.92 -26.73 -0.16 -1.22 16
22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16
23 C -0.10 -0.97 5.14 -26.74 -0.14 -1.11 16
24 C -0.06 -0.77 2.16 -91.77 -0.20 -0.97 16
25 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16
26 C 0.44 6.50 7.30 36.01 0.26 6.76 16
27 O -0.45 -8.88 13.01 -26.98 -0.35 -9.24 16
28 O -0.52 -5.78 13.33 -39.27 -0.52 -6.30 16
29 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16
30 H 0.04 0.92 6.78 -51.93 -0.35 0.56 16
31 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16
32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16
33 H 0.08 1.34 6.39 -51.93 -0.33 1.00 16
34 H 0.12 1.79 6.89 -51.93 -0.36 1.43 16
35 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16
36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16
39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
40 H 0.10 1.26 3.85 -51.93 -0.20 1.06 16
41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
46 H 0.08 0.67 8.11 -51.93 -0.42 0.24 16
47 H 0.41 3.02 9.10 45.56 0.41 3.44 16
LS Contribution 378.01 15.07 5.70 5.70
Total: -1.00 -36.38 378.01 -10.60 -46.98
By element:
Atomic # 1 Polarization: 10.97 SS G_CDS: -6.68 Total: 4.29 kcal
Atomic # 6 Polarization: -17.93 SS G_CDS: -1.86 Total: -19.79 kcal
Atomic # 7 Polarization: -46.74 SS G_CDS: 0.47 Total: -46.26 kcal
Atomic # 8 Polarization: -57.70 SS G_CDS: -2.74 Total: -60.44 kcal
Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal
Atomic # 16 Polarization: 52.61 SS G_CDS: -0.46 Total: 52.14 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -36.38 -10.60 -46.98 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001608183026.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.687 kcal
(2) G-P(sol) polarization free energy of solvation -36.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.063 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.978 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.665 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds