Wall clock time and date at job start Wed Apr 1 2020 03:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00339 * 2 1 4 4 H 1.48504 * 109.46990 * 239.99806 * 3 2 1 5 5 H 1.48495 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47470 * 119.99939 * 3 2 1 7 7 C 1.37874 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00190 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00227 * 275.00280 * 10 9 7 12 12 C 1.53002 * 109.46914 * 295.05561 * 11 10 9 13 13 C 1.52993 * 117.49842 * 242.76234 * 12 11 10 14 14 C 1.52994 * 60.00060 * 252.50906 * 13 12 11 15 15 S 1.65600 * 119.99947 * 94.99952 * 10 9 7 16 16 O 1.42100 * 104.27811 * 328.90646 * 15 10 9 17 17 O 1.42111 * 104.27624 * 201.05143 * 15 10 9 18 18 C 1.81401 * 104.44942 * 84.98056 * 15 10 9 19 19 H 1.09000 * 109.46642 * 291.90475 * 18 15 10 20 20 C 1.53003 * 109.46975 * 51.90500 * 18 15 10 21 21 C 1.52998 * 109.46949 * 180.02562 * 20 18 15 22 22 C 1.53002 * 109.47058 * 300.00394 * 21 20 18 23 23 C 1.52993 * 109.47558 * 59.99911 * 22 21 20 24 24 C 1.52998 * 109.47009 * 300.00119 * 23 22 21 25 25 H 1.08997 * 109.47423 * 299.99753 * 24 23 22 26 26 C 1.50699 * 109.47467 * 180.02562 * 24 23 22 27 27 O 1.20833 * 120.00136 * 240.00579 * 26 24 23 28 28 O 1.34233 * 120.00072 * 59.99221 * 26 24 23 29 29 H 0.96999 * 119.99554 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46849 * 60.00280 * 9 7 2 31 31 H 1.09001 * 109.47262 * 299.99941 * 9 7 2 32 32 H 1.09003 * 109.46920 * 55.05065 * 11 10 9 33 33 H 1.08992 * 109.47148 * 175.05484 * 11 10 9 34 34 H 1.09003 * 115.54985 * 28.46830 * 12 11 10 35 35 H 1.09002 * 117.50058 * 0.02562 * 13 12 11 36 36 H 1.09007 * 117.50259 * 145.01940 * 13 12 11 37 37 H 1.09001 * 117.50133 * 252.50732 * 14 13 12 38 38 H 1.08998 * 117.49723 * 107.48966 * 14 13 12 39 39 H 1.08995 * 109.46994 * 60.00529 * 20 18 15 40 40 H 1.08993 * 109.47187 * 300.00067 * 20 18 15 41 41 H 1.08991 * 109.47218 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.47238 * 59.99764 * 21 20 18 43 43 H 1.09001 * 109.47079 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46961 * 299.99402 * 22 21 20 45 45 H 1.09000 * 109.47400 * 59.99760 * 23 22 21 46 46 H 1.09003 * 109.47599 * 180.02562 * 23 22 21 47 47 H 0.96701 * 117.00103 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0027 11 6 2.7629 -4.0988 -1.2608 12 6 1.6448 -4.6948 -2.1184 13 6 1.7328 -6.1839 -2.4586 14 6 2.0027 -5.1351 -3.5393 15 16 2.6458 -4.3221 1.4320 16 8 2.5754 -3.2683 2.3828 17 8 3.8800 -4.9622 1.1378 18 6 1.3502 -5.5519 1.7477 19 1 0.4115 -5.0427 1.9662 20 6 1.1750 -6.4367 0.5118 21 6 0.0818 -7.4736 0.7778 22 6 0.4814 -8.3406 1.9735 23 6 0.6566 -7.4558 3.2093 24 6 1.7498 -6.4190 2.9432 25 1 2.6884 -6.9283 2.7251 26 6 1.9229 -5.5478 4.1607 27 8 1.7446 -4.3554 4.0807 28 8 2.2749 -6.0965 5.3341 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5575 -0.8880 31 1 0.6245 -2.5563 0.8920 32 1 3.2279 -3.2701 -1.7947 33 1 3.5110 -4.8645 -1.0558 34 1 0.6528 -4.2729 -1.9571 35 1 2.5870 -6.7391 -2.0710 36 1 0.7985 -6.7420 -2.5210 37 1 1.2460 -5.0031 -4.3128 38 1 3.0347 -5.0002 -3.8631 39 1 2.1136 -6.9458 0.2934 40 1 0.8899 -5.8191 -0.3398 41 1 -0.0428 -8.1042 -0.1024 42 1 -0.8568 -6.9642 0.9961 43 1 -0.2972 -9.0796 2.1627 44 1 1.4199 -8.8501 1.7553 45 1 -0.2820 -6.9464 3.4275 46 1 0.9417 -8.0735 4.0610 47 1 2.3743 -5.4975 6.0866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:04 Heat of formation + Delta-G solvation = -139.664891 kcal Electronic energy + Delta-G solvation = -31239.102570 eV Core-core repulsion = 27128.829050 eV Total energy + Delta-G solvation = -4110.273520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.61017 -38.32491 -37.57393 -36.43066 -36.03667 -35.12919 -34.68105 -32.30105 -31.53840 -31.09578 -27.73417 -25.43964 -24.69697 -23.30741 -22.55876 -22.12016 -21.31351 -20.22625 -19.83393 -18.12602 -17.92623 -17.26725 -16.92925 -16.44757 -16.04379 -15.63227 -15.40714 -15.02800 -14.49202 -14.42161 -14.13440 -14.09094 -13.89137 -13.55069 -13.34270 -12.82581 -12.60583 -12.49399 -12.14833 -11.83676 -11.73000 -11.62001 -11.60630 -11.48542 -11.36130 -11.26337 -11.11931 -11.02183 -10.96206 -10.85060 -10.69057 -10.58131 -10.47236 -10.30248 -10.17608 -9.94651 -9.69533 -9.60171 -9.46968 -8.35551 -7.95561 -5.98333 -4.00174 0.91391 2.17478 2.87604 3.36473 3.39678 3.42532 3.49032 4.00362 4.15334 4.41368 4.48031 4.51846 4.64597 4.78455 4.92722 5.00318 5.08085 5.09884 5.15404 5.16432 5.22717 5.32522 5.35614 5.37990 5.58813 5.64754 5.68868 5.77725 5.79603 5.80373 5.88532 5.90304 5.96769 6.04428 6.13573 6.20488 6.22544 6.28426 6.51435 6.56640 6.66457 7.25955 7.45187 7.67405 7.85893 7.99796 8.29987 9.01067 9.63781 11.10571 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005344 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.907547 B = 5238.121895 C = 6916.233556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.257 3.743 10 N -0.978 5.978 11 C 0.151 3.849 12 C -0.163 4.163 13 C -0.190 4.190 14 C -0.176 4.176 15 S 2.598 3.402 16 O -0.902 6.902 17 O -0.981 6.981 18 C -0.594 4.594 19 H 0.142 0.858 20 C -0.108 4.108 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.100 4.100 24 C -0.060 4.060 25 H 0.118 0.882 26 C 0.435 3.565 27 O -0.452 6.452 28 O -0.516 6.516 29 H 0.262 0.738 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.108 -19.278 1.496 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.136 3.864 10 N -0.817 5.817 11 C 0.025 3.975 12 C -0.183 4.183 13 C -0.227 4.227 14 C -0.214 4.214 15 S 2.688 3.312 16 O -0.892 6.892 17 O -0.971 6.971 18 C -0.699 4.699 19 H 0.160 0.840 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.156 4.156 23 C -0.139 4.139 24 C -0.080 4.080 25 H 0.136 0.864 26 C 0.274 3.726 27 O -0.335 6.335 28 O -0.329 6.329 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 0.373 -18.830 1.667 18.908 hybrid contribution -0.258 1.145 0.410 1.243 sum 0.115 -17.685 2.077 17.807 Atomic orbital electron populations 1.69906 1.05934 1.27011 1.51022 1.24896 0.94864 0.99131 0.95123 0.86603 0.79607 0.82781 0.78740 1.20254 1.21289 1.20048 1.21408 0.93576 0.90543 1.50261 0.92252 1.19038 0.87052 0.82255 0.98098 1.57466 1.60048 1.44642 1.19503 1.20766 0.93206 0.98926 0.84615 1.22933 1.02313 0.95896 0.97191 1.23156 1.02933 0.92209 1.04381 1.22911 1.02429 1.03841 0.92210 1.05586 0.75534 0.75474 0.74567 1.93726 1.85715 1.49644 1.60080 1.93488 1.39948 1.79101 1.84578 1.30742 1.22839 1.14982 1.01348 0.84000 1.21613 1.00688 0.97439 0.94837 1.21487 0.98591 0.97132 0.97959 1.21562 1.02036 0.97594 0.94446 1.21452 0.97264 0.96040 0.99120 1.20697 1.03361 0.95987 0.87957 0.86394 1.23779 0.75159 0.88404 0.85273 1.91189 1.43051 1.15034 1.84261 1.84443 1.81746 1.46407 1.20326 0.92798 0.94488 0.94637 0.90113 0.89916 0.86684 0.88799 0.89086 0.89062 0.88857 0.90614 0.88071 0.91271 0.91498 0.91273 0.91412 0.90944 0.90206 0.72929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -14.78 9.37 -34.44 -0.32 -15.11 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.26 6.40 4.86 -5.19 -0.03 6.38 16 10 N -0.98 -20.19 2.26 -115.66 -0.26 -20.45 16 11 C 0.15 2.63 5.80 -4.04 -0.02 2.61 16 12 C -0.16 -2.34 3.91 -90.62 -0.35 -2.69 16 13 C -0.19 -2.10 8.04 -26.74 -0.22 -2.31 16 14 C -0.18 -2.09 10.25 -26.74 -0.27 -2.37 16 15 S 2.60 52.61 4.31 -107.50 -0.46 52.14 16 16 O -0.90 -22.79 13.75 -67.40 -0.93 -23.72 16 17 O -0.98 -20.24 16.38 -57.54 -0.94 -21.18 16 18 C -0.59 -8.85 2.00 -26.73 -0.05 -8.90 16 19 H 0.14 2.16 8.10 -51.92 -0.42 1.74 16 20 C -0.11 -1.29 4.00 -26.73 -0.11 -1.40 16 21 C -0.11 -1.06 5.92 -26.73 -0.16 -1.22 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.10 -0.97 5.14 -26.74 -0.14 -1.11 16 24 C -0.06 -0.77 2.16 -91.77 -0.20 -0.97 16 25 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 26 C 0.44 6.50 7.30 36.01 0.26 6.76 16 27 O -0.45 -8.88 13.01 -26.98 -0.35 -9.24 16 28 O -0.52 -5.78 13.33 -39.27 -0.52 -6.30 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 30 H 0.04 0.92 6.78 -51.93 -0.35 0.56 16 31 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 32 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.08 1.34 6.39 -51.93 -0.33 1.00 16 34 H 0.12 1.79 6.89 -51.93 -0.36 1.43 16 35 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.26 3.85 -51.93 -0.20 1.06 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.08 0.67 8.11 -51.93 -0.42 0.24 16 47 H 0.41 3.02 9.10 45.56 0.41 3.44 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -36.38 378.01 -10.60 -46.98 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -6.68 Total: 4.29 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -1.86 Total: -19.79 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.47 Total: -46.26 kcal Atomic # 8 Polarization: -57.70 SS G_CDS: -2.74 Total: -60.44 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 16 Polarization: 52.61 SS G_CDS: -0.46 Total: 52.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.38 -10.60 -46.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.687 kcal (2) G-P(sol) polarization free energy of solvation -36.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds