Wall clock time and date at job start Wed Apr 1 2020 03:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00339 * 2 1 4 4 H 1.48504 * 109.46990 * 239.99806 * 3 2 1 5 5 H 1.48495 * 109.47144 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47470 * 119.99939 * 3 2 1 7 7 C 1.37874 * 119.99514 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00190 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47248 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00227 * 275.00280 * 10 9 7 12 12 C 1.53002 * 109.46914 * 295.05561 * 11 10 9 13 13 C 1.52993 * 117.49842 * 242.76234 * 12 11 10 14 14 C 1.52994 * 60.00060 * 252.50906 * 13 12 11 15 15 S 1.65600 * 119.99947 * 94.99952 * 10 9 7 16 16 O 1.42100 * 104.27811 * 328.90646 * 15 10 9 17 17 O 1.42111 * 104.27624 * 201.05143 * 15 10 9 18 18 C 1.81401 * 104.44942 * 84.98056 * 15 10 9 19 19 H 1.09000 * 109.46642 * 291.90475 * 18 15 10 20 20 C 1.53003 * 109.46975 * 51.90500 * 18 15 10 21 21 C 1.52998 * 109.46949 * 180.02562 * 20 18 15 22 22 C 1.53002 * 109.47058 * 300.00394 * 21 20 18 23 23 C 1.52993 * 109.47558 * 59.99911 * 22 21 20 24 24 C 1.52998 * 109.47009 * 300.00119 * 23 22 21 25 25 H 1.08997 * 109.47423 * 299.99753 * 24 23 22 26 26 C 1.50699 * 109.47467 * 180.02562 * 24 23 22 27 27 O 1.20833 * 120.00136 * 240.00579 * 26 24 23 28 28 O 1.34233 * 120.00072 * 59.99221 * 26 24 23 29 29 H 0.96999 * 119.99554 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.46849 * 60.00280 * 9 7 2 31 31 H 1.09001 * 109.47262 * 299.99941 * 9 7 2 32 32 H 1.09003 * 109.46920 * 55.05065 * 11 10 9 33 33 H 1.08992 * 109.47148 * 175.05484 * 11 10 9 34 34 H 1.09003 * 115.54985 * 28.46830 * 12 11 10 35 35 H 1.09002 * 117.50058 * 0.02562 * 13 12 11 36 36 H 1.09007 * 117.50259 * 145.01940 * 13 12 11 37 37 H 1.09001 * 117.50133 * 252.50732 * 14 13 12 38 38 H 1.08998 * 117.49723 * 107.48966 * 14 13 12 39 39 H 1.08995 * 109.46994 * 60.00529 * 20 18 15 40 40 H 1.08993 * 109.47187 * 300.00067 * 20 18 15 41 41 H 1.08991 * 109.47218 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.47238 * 59.99764 * 21 20 18 43 43 H 1.09001 * 109.47079 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46961 * 299.99402 * 22 21 20 45 45 H 1.09000 * 109.47400 * 59.99760 * 23 22 21 46 46 H 1.09003 * 109.47599 * 180.02562 * 23 22 21 47 47 H 0.96701 * 117.00103 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0027 11 6 2.7629 -4.0988 -1.2608 12 6 1.6448 -4.6948 -2.1184 13 6 1.7328 -6.1839 -2.4586 14 6 2.0027 -5.1351 -3.5393 15 16 2.6458 -4.3221 1.4320 16 8 2.5754 -3.2683 2.3828 17 8 3.8800 -4.9622 1.1378 18 6 1.3502 -5.5519 1.7477 19 1 0.4115 -5.0427 1.9662 20 6 1.1750 -6.4367 0.5118 21 6 0.0818 -7.4736 0.7778 22 6 0.4814 -8.3406 1.9735 23 6 0.6566 -7.4558 3.2093 24 6 1.7498 -6.4190 2.9432 25 1 2.6884 -6.9283 2.7251 26 6 1.9229 -5.5478 4.1607 27 8 1.7446 -4.3554 4.0807 28 8 2.2749 -6.0965 5.3341 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5575 -0.8880 31 1 0.6245 -2.5563 0.8920 32 1 3.2279 -3.2701 -1.7947 33 1 3.5110 -4.8645 -1.0558 34 1 0.6528 -4.2729 -1.9571 35 1 2.5870 -6.7391 -2.0710 36 1 0.7985 -6.7420 -2.5210 37 1 1.2460 -5.0031 -4.3128 38 1 3.0347 -5.0002 -3.8631 39 1 2.1136 -6.9458 0.2934 40 1 0.8899 -5.8191 -0.3398 41 1 -0.0428 -8.1042 -0.1024 42 1 -0.8568 -6.9642 0.9961 43 1 -0.2972 -9.0796 2.1627 44 1 1.4199 -8.8501 1.7553 45 1 -0.2820 -6.9464 3.4275 46 1 0.9417 -8.0735 4.0610 47 1 2.3743 -5.4975 6.0866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:03 Heat of formation + Delta-G solvation = -165.065508 kcal Electronic energy + Delta-G solvation = -31240.204024 eV Core-core repulsion = 27128.829050 eV Total energy + Delta-G solvation = -4111.374973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74899 -39.38813 -38.68295 -38.03240 -37.22851 -36.80187 -36.29155 -34.37497 -32.46196 -32.03198 -29.60663 -27.07050 -25.75630 -24.53546 -24.15977 -23.01930 -22.31339 -21.32364 -20.87165 -19.71952 -19.04262 -18.76110 -18.46906 -18.13189 -17.48640 -17.22574 -16.65520 -16.32975 -16.14212 -15.55335 -15.32435 -15.09032 -14.88402 -14.81475 -14.50831 -14.39233 -14.00908 -13.68565 -13.57170 -13.41139 -13.11421 -13.06253 -12.89511 -12.88489 -12.71593 -12.63176 -12.41811 -12.39519 -12.29616 -12.28283 -12.07232 -11.96851 -11.85297 -11.76175 -11.45091 -11.25975 -11.10777 -10.82780 -10.62635 -10.54888 -9.66531 -8.19654 -6.29335 -0.62887 1.01896 1.34597 1.39210 1.45995 1.76970 1.90550 2.40265 2.87536 3.00303 3.10760 3.14201 3.26722 3.67735 3.73033 3.94565 4.01267 4.04857 4.13052 4.16563 4.18932 4.28977 4.34837 4.38172 4.43882 4.46015 4.74273 4.89512 4.91159 4.93165 4.97647 5.04717 5.12606 5.15298 5.19849 5.22066 5.30008 5.34124 5.38503 5.41710 5.49655 5.53445 5.55048 5.72424 5.98454 6.14991 6.76800 6.83059 7.37705 8.87698 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.005344 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.907547 B = 5238.121895 C = 6916.233556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.283 1.283 7 C -0.541 4.541 8 H 0.044 0.956 9 C 0.278 3.722 10 N -0.985 5.985 11 C 0.149 3.851 12 C -0.188 4.188 13 C -0.161 4.161 14 C -0.171 4.171 15 S 2.583 3.417 16 O -0.967 6.967 17 O -0.994 6.994 18 C -0.558 4.558 19 H 0.135 0.865 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.065 4.065 25 H 0.137 0.863 26 C 0.435 3.565 27 O -0.509 6.509 28 O -0.500 6.500 29 H 0.266 0.734 30 H 0.035 0.965 31 H 0.009 0.991 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 -22.771 0.763 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.062 0.938 9 C 0.154 3.846 10 N -0.822 5.822 11 C 0.023 3.977 12 C -0.208 4.208 13 C -0.197 4.197 14 C -0.208 4.208 15 S 2.682 3.318 16 O -0.957 6.957 17 O -0.985 6.985 18 C -0.671 4.671 19 H 0.153 0.847 20 C -0.150 4.150 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.134 4.134 24 C -0.086 4.086 25 H 0.155 0.845 26 C 0.276 3.724 27 O -0.397 6.397 28 O -0.314 6.314 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 0.017 -22.301 0.918 22.320 hybrid contribution -0.105 2.112 0.731 2.237 sum -0.088 -20.189 1.649 20.256 Atomic orbital electron populations 1.69990 1.06996 1.27961 1.51523 1.25681 0.95824 1.02397 0.94788 0.85715 0.78696 0.79191 0.78757 1.18744 1.19770 1.20863 1.21753 0.93158 0.92707 1.50393 0.93799 1.18499 0.87076 0.82527 0.96455 1.57239 1.59453 1.44589 1.20926 1.20888 0.94667 0.98476 0.83641 1.22619 1.00152 0.99114 0.98956 1.23284 1.04436 0.90157 1.01870 1.23035 1.03094 1.03430 0.91282 1.05646 0.76642 0.76041 0.73510 1.93652 1.87029 1.53401 1.61607 1.93449 1.41660 1.78899 1.84462 1.30331 1.18773 1.13562 1.04402 0.84732 1.21812 1.02808 0.97698 0.92711 1.21527 0.96926 0.96591 0.99831 1.21617 1.03695 0.97371 0.92687 1.21543 0.95519 0.95281 1.01060 1.20981 1.05717 0.95977 0.85932 0.84532 1.24279 0.73711 0.87826 0.86587 1.91198 1.45822 1.17477 1.85197 1.84399 1.80678 1.46319 1.20009 0.92470 0.94707 0.97342 0.92476 0.88730 0.88456 0.87559 0.86730 0.87979 0.88366 0.89141 0.88685 0.88574 0.91986 0.88788 0.89948 0.91352 0.88052 0.70975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.34 13.29 21.45 0.28 -56.05 16 2 C 0.01 0.72 5.46 84.65 0.46 1.18 16 3 Si 0.95 47.18 29.54 68.60 2.03 49.20 16 4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.54 -32.54 9.37 25.60 0.24 -32.30 16 8 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16 9 C 0.28 14.73 4.86 85.63 0.42 15.15 16 10 N -0.99 -42.86 2.26 -519.85 -1.18 -44.03 16 11 C 0.15 5.34 5.80 86.38 0.50 5.84 16 12 C -0.19 -5.31 3.91 -10.80 -0.04 -5.35 16 13 C -0.16 -3.05 8.04 30.59 0.25 -2.80 16 14 C -0.17 -3.73 10.25 30.59 0.31 -3.41 16 15 S 2.58 109.32 4.31 -56.49 -0.24 109.07 16 16 O -0.97 -52.49 13.75 -118.22 -1.63 -54.12 16 17 O -0.99 -41.92 16.38 -127.65 -2.09 -44.01 16 18 C -0.56 -16.46 2.00 30.59 0.06 -16.40 16 19 H 0.13 4.24 8.10 -2.39 -0.02 4.22 16 20 C -0.11 -2.41 4.00 30.59 0.12 -2.29 16 21 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 22 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 23 C -0.10 -1.52 5.14 30.59 0.16 -1.36 16 24 C -0.07 -1.58 2.16 -11.54 -0.02 -1.60 16 25 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 26 C 0.43 12.93 7.30 71.24 0.52 13.45 16 27 O -0.51 -21.06 13.01 29.81 0.39 -20.67 16 28 O -0.50 -10.52 13.33 -51.45 -0.69 -11.21 16 29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.03 1.83 6.78 -2.39 -0.02 1.82 16 31 H 0.01 0.50 7.75 -2.39 -0.02 0.48 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.09 3.08 6.39 -2.39 -0.02 3.07 16 34 H 0.10 3.10 6.89 -2.39 -0.02 3.08 16 35 H 0.11 1.79 8.03 -2.39 -0.02 1.77 16 36 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.09 2.21 3.85 -2.39 -0.01 2.20 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.10 1.24 8.11 -2.39 -0.02 1.22 16 47 H 0.43 5.93 9.10 -74.06 -0.67 5.25 16 Total: -1.00 -84.90 378.01 0.52 -84.38 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.31 Total: 19.91 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.33 Total: -32.48 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -0.89 Total: -100.08 kcal Atomic # 8 Polarization: -125.99 SS G_CDS: -4.01 Total: -130.01 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal Atomic # 16 Polarization: 109.32 SS G_CDS: -0.24 Total: 109.07 kcal Total: -84.90 0.52 -84.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.684 kcal (2) G-P(sol) polarization free energy of solvation -84.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds