Wall clock time and date at job start Wed Apr 1 2020 03:21:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86795 * 120.00339 * 2 1
4 4 H 1.48504 * 109.46990 * 239.99806 * 3 2 1
5 5 H 1.48495 * 109.47144 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47470 * 119.99939 * 3 2 1
7 7 C 1.37874 * 119.99514 * 179.97438 * 2 1 3
8 8 H 1.08006 * 120.00223 * 180.02562 * 7 2 1
9 9 C 1.50703 * 120.00190 * 359.97438 * 7 2 1
10 10 N 1.46498 * 109.47248 * 180.02562 * 9 7 2
11 11 C 1.46502 * 120.00227 * 275.00280 * 10 9 7
12 12 C 1.53002 * 109.46914 * 295.05561 * 11 10 9
13 13 C 1.52993 * 117.49842 * 242.76234 * 12 11 10
14 14 C 1.52994 * 60.00060 * 252.50906 * 13 12 11
15 15 S 1.65600 * 119.99947 * 94.99952 * 10 9 7
16 16 O 1.42100 * 104.27811 * 328.90646 * 15 10 9
17 17 O 1.42111 * 104.27624 * 201.05143 * 15 10 9
18 18 C 1.81401 * 104.44942 * 84.98056 * 15 10 9
19 19 H 1.09000 * 109.46642 * 291.90475 * 18 15 10
20 20 C 1.53003 * 109.46975 * 51.90500 * 18 15 10
21 21 C 1.52998 * 109.46949 * 180.02562 * 20 18 15
22 22 C 1.53002 * 109.47058 * 300.00394 * 21 20 18
23 23 C 1.52993 * 109.47558 * 59.99911 * 22 21 20
24 24 C 1.52998 * 109.47009 * 300.00119 * 23 22 21
25 25 H 1.08997 * 109.47423 * 299.99753 * 24 23 22
26 26 C 1.50699 * 109.47467 * 180.02562 * 24 23 22
27 27 O 1.20833 * 120.00136 * 240.00579 * 26 24 23
28 28 O 1.34233 * 120.00072 * 59.99221 * 26 24 23
29 29 H 0.96999 * 119.99554 * 359.97438 * 1 2 3
30 30 H 1.08996 * 109.46849 * 60.00280 * 9 7 2
31 31 H 1.09001 * 109.47262 * 299.99941 * 9 7 2
32 32 H 1.09003 * 109.46920 * 55.05065 * 11 10 9
33 33 H 1.08992 * 109.47148 * 175.05484 * 11 10 9
34 34 H 1.09003 * 115.54985 * 28.46830 * 12 11 10
35 35 H 1.09002 * 117.50058 * 0.02562 * 13 12 11
36 36 H 1.09007 * 117.50259 * 145.01940 * 13 12 11
37 37 H 1.09001 * 117.50133 * 252.50732 * 14 13 12
38 38 H 1.08998 * 117.49723 * 107.48966 * 14 13 12
39 39 H 1.08995 * 109.46994 * 60.00529 * 20 18 15
40 40 H 1.08993 * 109.47187 * 300.00067 * 20 18 15
41 41 H 1.08991 * 109.47218 * 180.02562 * 21 20 18
42 42 H 1.09002 * 109.47238 * 59.99764 * 21 20 18
43 43 H 1.09001 * 109.47079 * 180.02562 * 22 21 20
44 44 H 1.09000 * 109.46961 * 299.99402 * 22 21 20
45 45 H 1.09000 * 109.47400 * 59.99760 * 23 22 21
46 46 H 1.09003 * 109.47599 * 180.02562 * 23 22 21
47 47 H 0.96701 * 117.00103 * 179.97438 * 28 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2844 2.7464 -0.0006
6 1 3.1030 1.6963 1.2124
7 6 2.0044 -1.1941 0.0005
8 1 3.0845 -1.1942 0.0010
9 6 1.2509 -2.4992 0.0017
10 7 2.2028 -3.6127 0.0027
11 6 2.7629 -4.0988 -1.2608
12 6 1.6448 -4.6948 -2.1184
13 6 1.7328 -6.1839 -2.4586
14 6 2.0027 -5.1351 -3.5393
15 16 2.6458 -4.3221 1.4320
16 8 2.5754 -3.2683 2.3828
17 8 3.8800 -4.9622 1.1378
18 6 1.3502 -5.5519 1.7477
19 1 0.4115 -5.0427 1.9662
20 6 1.1750 -6.4367 0.5118
21 6 0.0818 -7.4736 0.7778
22 6 0.4814 -8.3406 1.9735
23 6 0.6566 -7.4558 3.2093
24 6 1.7498 -6.4190 2.9432
25 1 2.6884 -6.9283 2.7251
26 6 1.9229 -5.5478 4.1607
27 8 1.7446 -4.3554 4.0807
28 8 2.2749 -6.0965 5.3341
29 1 -0.4849 0.8401 0.0004
30 1 0.6239 -2.5575 -0.8880
31 1 0.6245 -2.5563 0.8920
32 1 3.2279 -3.2701 -1.7947
33 1 3.5110 -4.8645 -1.0558
34 1 0.6528 -4.2729 -1.9571
35 1 2.5870 -6.7391 -2.0710
36 1 0.7985 -6.7420 -2.5210
37 1 1.2460 -5.0031 -4.3128
38 1 3.0347 -5.0002 -3.8631
39 1 2.1136 -6.9458 0.2934
40 1 0.8899 -5.8191 -0.3398
41 1 -0.0428 -8.1042 -0.1024
42 1 -0.8568 -6.9642 0.9961
43 1 -0.2972 -9.0796 2.1627
44 1 1.4199 -8.8501 1.7553
45 1 -0.2820 -6.9464 3.4275
46 1 0.9417 -8.0735 4.0610
47 1 2.3743 -5.4975 6.0866
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001608183026.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:21:03
Heat of formation + Delta-G solvation = -165.065508 kcal
Electronic energy + Delta-G solvation = -31240.204024 eV
Core-core repulsion = 27128.829050 eV
Total energy + Delta-G solvation = -4111.374973 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.74899 -39.38813 -38.68295 -38.03240 -37.22851 -36.80187 -36.29155 -34.37497
-32.46196 -32.03198 -29.60663 -27.07050 -25.75630 -24.53546 -24.15977 -23.01930
-22.31339 -21.32364 -20.87165 -19.71952 -19.04262 -18.76110 -18.46906 -18.13189
-17.48640 -17.22574 -16.65520 -16.32975 -16.14212 -15.55335 -15.32435 -15.09032
-14.88402 -14.81475 -14.50831 -14.39233 -14.00908 -13.68565 -13.57170 -13.41139
-13.11421 -13.06253 -12.89511 -12.88489 -12.71593 -12.63176 -12.41811 -12.39519
-12.29616 -12.28283 -12.07232 -11.96851 -11.85297 -11.76175 -11.45091 -11.25975
-11.10777 -10.82780 -10.62635 -10.54888 -9.66531 -8.19654 -6.29335 -0.62887
1.01896 1.34597 1.39210 1.45995 1.76970 1.90550 2.40265 2.87536
3.00303 3.10760 3.14201 3.26722 3.67735 3.73033 3.94565 4.01267
4.04857 4.13052 4.16563 4.18932 4.28977 4.34837 4.38172 4.43882
4.46015 4.74273 4.89512 4.91159 4.93165 4.97647 5.04717 5.12606
5.15298 5.19849 5.22066 5.30008 5.34124 5.38503 5.41710 5.49655
5.53445 5.55048 5.72424 5.98454 6.14991 6.76800 6.83059 7.37705
8.87698
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010556 B = 0.005344 C = 0.004047
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2651.907547 B = 5238.121895 C = 6916.233556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.924 5.924
2 C 0.012 3.988
3 Si 0.951 3.049
4 H -0.263 1.263
5 H -0.273 1.273
6 H -0.283 1.283
7 C -0.541 4.541
8 H 0.044 0.956
9 C 0.278 3.722
10 N -0.985 5.985
11 C 0.149 3.851
12 C -0.188 4.188
13 C -0.161 4.161
14 C -0.171 4.171
15 S 2.583 3.417
16 O -0.967 6.967
17 O -0.994 6.994
18 C -0.558 4.558
19 H 0.135 0.865
20 C -0.112 4.112
21 C -0.110 4.110
22 C -0.117 4.117
23 C -0.096 4.096
24 C -0.065 4.065
25 H 0.137 0.863
26 C 0.435 3.565
27 O -0.509 6.509
28 O -0.500 6.500
29 H 0.266 0.734
30 H 0.035 0.965
31 H 0.009 0.991
32 H 0.057 0.943
33 H 0.095 0.905
34 H 0.097 0.903
35 H 0.106 0.894
36 H 0.114 0.886
37 H 0.102 0.898
38 H 0.098 0.902
39 H 0.090 0.910
40 H 0.095 0.905
41 H 0.096 0.904
42 H 0.061 0.939
43 H 0.094 0.906
44 H 0.082 0.918
45 H 0.068 0.932
46 H 0.101 0.899
47 H 0.428 0.572
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.534 -22.771 0.763 22.790
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.187 4.187
3 Si 0.776 3.224
4 H -0.187 1.187
5 H -0.198 1.198
6 H -0.209 1.209
7 C -0.580 4.580
8 H 0.062 0.938
9 C 0.154 3.846
10 N -0.822 5.822
11 C 0.023 3.977
12 C -0.208 4.208
13 C -0.197 4.197
14 C -0.208 4.208
15 S 2.682 3.318
16 O -0.957 6.957
17 O -0.985 6.985
18 C -0.671 4.671
19 H 0.153 0.847
20 C -0.150 4.150
21 C -0.149 4.149
22 C -0.154 4.154
23 C -0.134 4.134
24 C -0.086 4.086
25 H 0.155 0.845
26 C 0.276 3.724
27 O -0.397 6.397
28 O -0.314 6.314
29 H 0.075 0.925
30 H 0.053 0.947
31 H 0.027 0.973
32 H 0.075 0.925
33 H 0.113 0.887
34 H 0.115 0.885
35 H 0.124 0.876
36 H 0.133 0.867
37 H 0.120 0.880
38 H 0.116 0.884
39 H 0.109 0.891
40 H 0.113 0.887
41 H 0.114 0.886
42 H 0.080 0.920
43 H 0.112 0.888
44 H 0.101 0.899
45 H 0.086 0.914
46 H 0.119 0.881
47 H 0.290 0.710
Dipole moment (debyes) X Y Z Total
from point charges 0.017 -22.301 0.918 22.320
hybrid contribution -0.105 2.112 0.731 2.237
sum -0.088 -20.189 1.649 20.256
Atomic orbital electron populations
1.69990 1.06996 1.27961 1.51523 1.25681 0.95824 1.02397 0.94788
0.85715 0.78696 0.79191 0.78757 1.18744 1.19770 1.20863 1.21753
0.93158 0.92707 1.50393 0.93799 1.18499 0.87076 0.82527 0.96455
1.57239 1.59453 1.44589 1.20926 1.20888 0.94667 0.98476 0.83641
1.22619 1.00152 0.99114 0.98956 1.23284 1.04436 0.90157 1.01870
1.23035 1.03094 1.03430 0.91282 1.05646 0.76642 0.76041 0.73510
1.93652 1.87029 1.53401 1.61607 1.93449 1.41660 1.78899 1.84462
1.30331 1.18773 1.13562 1.04402 0.84732 1.21812 1.02808 0.97698
0.92711 1.21527 0.96926 0.96591 0.99831 1.21617 1.03695 0.97371
0.92687 1.21543 0.95519 0.95281 1.01060 1.20981 1.05717 0.95977
0.85932 0.84532 1.24279 0.73711 0.87826 0.86587 1.91198 1.45822
1.17477 1.85197 1.84399 1.80678 1.46319 1.20009 0.92470 0.94707
0.97342 0.92476 0.88730 0.88456 0.87559 0.86730 0.87979 0.88366
0.89141 0.88685 0.88574 0.91986 0.88788 0.89948 0.91352 0.88052
0.70975
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.34 13.29 21.45 0.28 -56.05 16
2 C 0.01 0.72 5.46 84.65 0.46 1.18 16
3 Si 0.95 47.18 29.54 68.60 2.03 49.20 16
4 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16
5 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16
6 H -0.28 -14.28 7.11 99.48 0.71 -13.58 16
7 C -0.54 -32.54 9.37 25.60 0.24 -32.30 16
8 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16
9 C 0.28 14.73 4.86 85.63 0.42 15.15 16
10 N -0.99 -42.86 2.26 -519.85 -1.18 -44.03 16
11 C 0.15 5.34 5.80 86.38 0.50 5.84 16
12 C -0.19 -5.31 3.91 -10.80 -0.04 -5.35 16
13 C -0.16 -3.05 8.04 30.59 0.25 -2.80 16
14 C -0.17 -3.73 10.25 30.59 0.31 -3.41 16
15 S 2.58 109.32 4.31 -56.49 -0.24 109.07 16
16 O -0.97 -52.49 13.75 -118.22 -1.63 -54.12 16
17 O -0.99 -41.92 16.38 -127.65 -2.09 -44.01 16
18 C -0.56 -16.46 2.00 30.59 0.06 -16.40 16
19 H 0.13 4.24 8.10 -2.39 -0.02 4.22 16
20 C -0.11 -2.41 4.00 30.59 0.12 -2.29 16
21 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16
22 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16
23 C -0.10 -1.52 5.14 30.59 0.16 -1.36 16
24 C -0.07 -1.58 2.16 -11.54 -0.02 -1.60 16
25 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16
26 C 0.43 12.93 7.30 71.24 0.52 13.45 16
27 O -0.51 -21.06 13.01 29.81 0.39 -20.67 16
28 O -0.50 -10.52 13.33 -51.45 -0.69 -11.21 16
29 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
30 H 0.03 1.83 6.78 -2.39 -0.02 1.82 16
31 H 0.01 0.50 7.75 -2.39 -0.02 0.48 16
32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16
33 H 0.09 3.08 6.39 -2.39 -0.02 3.07 16
34 H 0.10 3.10 6.89 -2.39 -0.02 3.08 16
35 H 0.11 1.79 8.03 -2.39 -0.02 1.77 16
36 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16
37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16
38 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16
39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
40 H 0.09 2.21 3.85 -2.39 -0.01 2.20 16
41 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16
42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
46 H 0.10 1.24 8.11 -2.39 -0.02 1.22 16
47 H 0.43 5.93 9.10 -74.06 -0.67 5.25 16
Total: -1.00 -84.90 378.01 0.52 -84.38
By element:
Atomic # 1 Polarization: 19.60 SS G_CDS: 0.31 Total: 19.91 kcal
Atomic # 6 Polarization: -35.81 SS G_CDS: 3.33 Total: -32.48 kcal
Atomic # 7 Polarization: -99.19 SS G_CDS: -0.89 Total: -100.08 kcal
Atomic # 8 Polarization: -125.99 SS G_CDS: -4.01 Total: -130.01 kcal
Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.20 kcal
Atomic # 16 Polarization: 109.32 SS G_CDS: -0.24 Total: 109.07 kcal
Total: -84.90 0.52 -84.38 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001608183026.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.684 kcal
(2) G-P(sol) polarization free energy of solvation -84.900 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.381 kcal
(6) G-S(sol) free energy of system = (1) + (5) -165.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds