Wall clock time and date at job start Wed Apr 1 2020 03:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46846 * 270.00002 * 3 2 1 5 5 H 1.48494 * 109.47116 * 29.99690 * 3 2 1 6 6 H 1.48498 * 109.47319 * 150.00254 * 3 2 1 7 7 C 1.37879 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99796 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.43377 * 57.46455 * 9 7 2 11 11 C 1.54891 * 110.48488 * 294.77765 * 9 7 2 12 12 C 1.54892 * 102.74622 * 203.37883 * 11 9 7 13 13 C 1.54270 * 104.19648 * 37.94039 * 12 11 9 14 14 H 1.08995 * 110.07813 * 217.08096 * 13 12 11 15 15 N 1.46504 * 110.02863 * 95.67194 * 13 12 11 16 16 S 1.65608 * 119.99509 * 97.83820 * 15 13 12 17 17 O 1.42100 * 104.27513 * 308.92518 * 16 15 13 18 18 O 1.42105 * 104.27045 * 181.06816 * 16 15 13 19 19 C 1.81399 * 104.45050 * 64.99816 * 16 15 13 20 20 H 1.09000 * 109.47234 * 299.99908 * 19 16 15 21 21 C 1.53006 * 109.47004 * 59.99816 * 19 16 15 22 22 C 1.52999 * 109.46626 * 179.97438 * 21 19 16 23 23 C 1.52997 * 109.47592 * 300.00035 * 22 21 19 24 24 C 1.52996 * 109.47165 * 60.00300 * 23 22 21 25 25 C 1.52997 * 109.47139 * 179.97438 * 19 16 15 26 26 H 1.09001 * 109.47230 * 59.99303 * 25 19 16 27 27 C 1.50703 * 109.47084 * 300.00100 * 25 19 16 28 28 O 1.20824 * 120.00141 * 359.97438 * 27 25 19 29 29 O 1.34235 * 120.00083 * 180.02562 * 27 25 19 30 30 C 1.53876 * 106.59721 * 336.39271 * 13 12 11 31 31 H 0.97001 * 120.00119 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.75710 * 321.69012 * 11 9 7 33 33 H 1.08991 * 110.75528 * 85.06783 * 11 9 7 34 34 H 1.09002 * 110.48671 * 279.27012 * 12 11 9 35 35 H 1.08995 * 110.48795 * 156.61844 * 12 11 9 36 36 H 0.96995 * 120.00657 * 277.82900 * 15 13 12 37 37 H 1.08993 * 109.46955 * 300.00150 * 21 19 16 38 38 H 1.09000 * 109.47050 * 59.99979 * 21 19 16 39 39 H 1.09000 * 109.47160 * 60.00369 * 22 21 19 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47140 * 300.00346 * 23 22 21 42 42 H 1.09001 * 109.47375 * 180.02562 * 23 22 21 43 43 H 1.08992 * 109.47534 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47134 * 59.99508 * 24 23 22 45 45 H 0.96697 * 116.99920 * 180.02562 * 29 27 25 46 46 H 1.09002 * 110.03139 * 119.28044 * 30 13 12 47 47 H 1.08999 * 110.03186 * 240.66361 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5847 -2.5546 -0.8591 11 6 0.4539 -2.6637 1.3195 12 6 0.2759 -4.1989 1.4219 13 6 1.6126 -4.7700 0.9051 14 1 1.4340 -5.6790 0.3308 15 7 2.5051 -5.0556 2.0312 16 16 2.6173 -6.5960 2.6288 17 8 1.2688 -6.9843 2.8521 18 8 3.5367 -6.4875 3.7069 19 6 3.3398 -7.5570 1.2704 20 1 2.6855 -7.5047 0.4002 21 6 4.7117 -6.9818 0.9122 22 6 5.3213 -7.7928 -0.2330 23 6 5.4774 -9.2514 0.2014 24 6 4.1056 -9.8265 0.5596 25 6 3.4964 -9.0157 1.7045 26 1 2.5193 -9.4256 1.9601 27 6 4.4014 -9.0874 2.9075 28 8 4.8731 -8.0757 3.3698 29 8 4.6842 -10.2754 3.4647 30 6 2.2326 -3.6892 0.0022 31 1 -0.4850 0.8400 -0.0004 32 1 1.0251 -2.2837 2.1666 33 1 -0.5135 -2.1665 1.2503 34 1 -0.5494 -4.5302 0.7917 35 1 0.1094 -4.4954 2.4574 36 1 3.0304 -4.3426 2.4268 37 1 4.6005 -5.9426 0.6031 38 1 5.3660 -7.0341 1.7824 39 1 4.6671 -7.7409 -1.1034 40 1 6.2988 -7.3834 -0.4879 41 1 6.1316 -9.3033 1.0717 42 1 5.9122 -9.8290 -0.6144 43 1 4.2168 -10.8655 0.8695 44 1 3.4514 -9.7746 -0.3107 45 1 5.2690 -10.2710 4.2348 46 1 3.1975 -3.3772 0.4018 47 1 2.3548 -4.0737 -1.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:11 Heat of formation + Delta-G solvation = -177.764390 kcal Electronic energy + Delta-G solvation = -30451.300281 eV Core-core repulsion = 26339.374643 eV Total energy + Delta-G solvation = -4111.925638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.17834 -38.13632 -37.81522 -36.83584 -36.23921 -35.65507 -33.53008 -31.83349 -31.64109 -31.22237 -28.12972 -26.72824 -25.01068 -23.82568 -23.37261 -22.07429 -20.33054 -19.83879 -19.33498 -18.84689 -18.14077 -17.57428 -16.97373 -16.57135 -16.50781 -15.84371 -15.53271 -15.07001 -14.72735 -14.52319 -14.38139 -14.20137 -14.06387 -13.46157 -13.08004 -12.94079 -12.72585 -12.61227 -12.49845 -12.24805 -12.11957 -11.79756 -11.73144 -11.65021 -11.55827 -11.41933 -11.30591 -10.99329 -10.95873 -10.75082 -10.65342 -10.51559 -10.29604 -10.22760 -10.05670 -9.94270 -9.56535 -9.23766 -8.92954 -8.77908 -8.34732 -6.00308 -4.03070 0.40184 1.91754 2.61814 2.92524 3.30640 3.38118 3.40751 3.73472 4.01117 4.06958 4.37454 4.44427 4.48675 4.69380 4.85862 4.87813 4.92131 4.99934 5.03503 5.18596 5.31187 5.33248 5.39053 5.55739 5.58927 5.66445 5.70406 5.74494 5.83060 5.87932 5.91834 6.03941 6.35351 6.35691 6.49615 6.69166 6.70668 6.79152 6.97476 7.23555 7.36881 7.41909 7.61805 7.72649 7.87826 8.03251 8.44334 8.99469 9.60997 11.09112 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.003093 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.701760 B = 9051.299564 C = 9481.322521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.142 4.142 13 C 0.148 3.852 14 H 0.066 0.934 15 N -1.102 6.102 16 S 2.599 3.401 17 O -0.962 6.962 18 O -0.928 6.928 19 C -0.584 4.584 20 H 0.146 0.854 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.063 4.063 26 H 0.119 0.881 27 C 0.441 3.559 28 O -0.450 6.450 29 O -0.515 6.515 30 C -0.122 4.122 31 H 0.259 0.741 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.419 0.581 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.412 0.588 46 H 0.066 0.934 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 -21.979 0.755 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.138 4.138 12 C -0.182 4.182 13 C 0.042 3.958 14 H 0.084 0.916 15 N -0.862 5.862 16 S 2.690 3.310 17 O -0.951 6.951 18 O -0.918 6.918 19 C -0.691 4.691 20 H 0.164 0.836 21 C -0.154 4.154 22 C -0.151 4.151 23 C -0.163 4.163 24 C -0.139 4.139 25 C -0.084 4.084 26 H 0.137 0.863 27 C 0.280 3.720 28 O -0.334 6.334 29 O -0.328 6.328 30 C -0.162 4.162 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.255 0.745 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.271 0.729 46 H 0.085 0.915 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.329 -21.987 1.326 23.549 hybrid contribution 1.119 1.196 -0.062 1.639 sum 9.448 -20.791 1.264 22.872 Atomic orbital electron populations 1.69953 1.05860 1.26424 1.50440 1.24979 0.94824 0.98994 0.95142 0.86662 0.79928 0.83799 0.77983 1.20816 1.21335 1.19969 1.21176 0.92667 0.90523 1.50852 0.92708 1.19467 0.92467 0.91175 0.94033 0.94942 1.22451 1.01335 0.90448 0.99578 1.22933 0.95314 0.99608 1.00309 1.21543 0.90190 0.98321 0.85765 0.91582 1.55647 1.56586 1.26004 1.48000 1.05423 0.74771 0.74797 0.75987 1.93605 1.34363 1.83256 1.83924 1.93697 1.64672 1.84461 1.48941 1.30514 1.10737 1.05994 1.21853 0.83606 1.21593 0.92358 1.00018 1.01387 1.21482 1.01300 0.94493 0.97848 1.21627 0.96426 0.96664 1.01610 1.21471 0.97328 0.98725 0.96410 1.20696 0.99735 0.95191 0.92782 0.86302 1.23547 0.82195 0.81605 0.84653 1.91038 1.47732 1.34146 1.60473 1.84456 1.65949 1.34598 1.47749 1.22652 1.00742 0.96043 0.96713 0.93096 0.93318 0.91467 0.91924 0.92185 0.74483 0.89630 0.88045 0.91351 0.91158 0.92121 0.91000 0.89985 0.89755 0.72878 0.91521 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 12.29 55.43 0.68 -24.44 16 2 C 0.06 1.70 5.35 -17.82 -0.10 1.60 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.56 8.46 -34.44 -0.29 -13.86 16 8 H 0.05 1.42 7.54 -52.49 -0.40 1.03 16 9 C 0.05 1.11 2.72 -90.11 -0.25 0.86 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.10 -2.26 5.75 -24.74 -0.14 -2.41 16 12 C -0.14 -2.69 6.54 -25.07 -0.16 -2.85 16 13 C 0.15 2.42 3.34 -66.81 -0.22 2.20 16 14 H 0.07 0.89 7.22 -51.93 -0.37 0.51 16 15 N -1.10 -16.72 4.97 -3.94 -0.02 -16.74 16 16 S 2.60 38.14 4.49 -107.50 -0.48 37.65 16 17 O -0.96 -16.69 17.82 -57.54 -1.03 -17.72 16 18 O -0.93 -16.15 14.14 -67.55 -0.96 -17.11 16 19 C -0.58 -6.14 2.35 -26.73 -0.06 -6.20 16 20 H 0.15 1.21 7.48 -51.92 -0.39 0.82 16 21 C -0.12 -1.20 4.81 -26.73 -0.13 -1.33 16 22 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 23 C -0.13 -0.91 5.70 -26.73 -0.15 -1.07 16 24 C -0.10 -0.69 5.39 -26.76 -0.14 -0.84 16 25 C -0.06 -0.59 2.65 -91.79 -0.24 -0.83 16 26 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 27 C 0.44 4.76 5.77 36.01 0.21 4.97 16 28 O -0.45 -6.30 10.47 -27.11 -0.28 -6.58 16 29 O -0.51 -4.10 13.32 -39.27 -0.52 -4.62 16 30 C -0.12 -2.25 6.13 -25.62 -0.16 -2.41 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.05 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.07 1.67 7.55 -51.93 -0.39 1.28 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.42 6.31 8.63 -34.47 -0.30 6.01 16 37 H 0.09 0.89 7.91 -51.93 -0.41 0.48 16 38 H 0.10 1.22 5.50 -51.93 -0.29 0.93 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.49 7.21 -51.93 -0.37 0.11 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.41 1.71 9.10 45.56 0.41 2.12 16 46 H 0.07 1.22 7.26 -51.93 -0.38 0.84 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -34.50 372.32 -10.67 -45.18 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.66 Total: 6.01 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -2.00 Total: -23.24 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.66 Total: -41.19 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.79 Total: -46.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 38.14 SS G_CDS: -0.48 Total: 37.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.50 -10.67 -45.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.588 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds