Wall clock time and date at job start Wed Apr 1 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46846 * 270.00002 * 3 2 1 5 5 H 1.48494 * 109.47116 * 29.99690 * 3 2 1 6 6 H 1.48498 * 109.47319 * 150.00254 * 3 2 1 7 7 C 1.37879 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99796 * 359.97438 * 7 2 1 10 10 H 1.08995 * 110.43377 * 57.46455 * 9 7 2 11 11 C 1.54891 * 110.48488 * 294.77765 * 9 7 2 12 12 C 1.54892 * 102.74622 * 203.37883 * 11 9 7 13 13 C 1.54270 * 104.19648 * 37.94039 * 12 11 9 14 14 H 1.08995 * 110.07813 * 217.08096 * 13 12 11 15 15 N 1.46504 * 110.02863 * 95.67194 * 13 12 11 16 16 S 1.65608 * 119.99509 * 97.83820 * 15 13 12 17 17 O 1.42100 * 104.27513 * 308.92518 * 16 15 13 18 18 O 1.42105 * 104.27045 * 181.06816 * 16 15 13 19 19 C 1.81399 * 104.45050 * 64.99816 * 16 15 13 20 20 H 1.09000 * 109.47234 * 299.99908 * 19 16 15 21 21 C 1.53006 * 109.47004 * 59.99816 * 19 16 15 22 22 C 1.52999 * 109.46626 * 179.97438 * 21 19 16 23 23 C 1.52997 * 109.47592 * 300.00035 * 22 21 19 24 24 C 1.52996 * 109.47165 * 60.00300 * 23 22 21 25 25 C 1.52997 * 109.47139 * 179.97438 * 19 16 15 26 26 H 1.09001 * 109.47230 * 59.99303 * 25 19 16 27 27 C 1.50703 * 109.47084 * 300.00100 * 25 19 16 28 28 O 1.20824 * 120.00141 * 359.97438 * 27 25 19 29 29 O 1.34235 * 120.00083 * 180.02562 * 27 25 19 30 30 C 1.53876 * 106.59721 * 336.39271 * 13 12 11 31 31 H 0.97001 * 120.00119 * 0.02562 * 1 2 3 32 32 H 1.09005 * 110.75710 * 321.69012 * 11 9 7 33 33 H 1.08991 * 110.75528 * 85.06783 * 11 9 7 34 34 H 1.09002 * 110.48671 * 279.27012 * 12 11 9 35 35 H 1.08995 * 110.48795 * 156.61844 * 12 11 9 36 36 H 0.96995 * 120.00657 * 277.82900 * 15 13 12 37 37 H 1.08993 * 109.46955 * 300.00150 * 21 19 16 38 38 H 1.09000 * 109.47050 * 59.99979 * 21 19 16 39 39 H 1.09000 * 109.47160 * 60.00369 * 22 21 19 40 40 H 1.09002 * 109.46719 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.47140 * 300.00346 * 23 22 21 42 42 H 1.09001 * 109.47375 * 180.02562 * 23 22 21 43 43 H 1.08992 * 109.47534 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47134 * 59.99508 * 24 23 22 45 45 H 0.96697 * 116.99920 * 180.02562 * 29 27 25 46 46 H 1.09002 * 110.03139 * 119.28044 * 30 13 12 47 47 H 1.08999 * 110.03186 * 240.66361 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5847 -2.5546 -0.8591 11 6 0.4539 -2.6637 1.3195 12 6 0.2759 -4.1989 1.4219 13 6 1.6126 -4.7700 0.9051 14 1 1.4340 -5.6790 0.3308 15 7 2.5051 -5.0556 2.0312 16 16 2.6173 -6.5960 2.6288 17 8 1.2688 -6.9843 2.8521 18 8 3.5367 -6.4875 3.7069 19 6 3.3398 -7.5570 1.2704 20 1 2.6855 -7.5047 0.4002 21 6 4.7117 -6.9818 0.9122 22 6 5.3213 -7.7928 -0.2330 23 6 5.4774 -9.2514 0.2014 24 6 4.1056 -9.8265 0.5596 25 6 3.4964 -9.0157 1.7045 26 1 2.5193 -9.4256 1.9601 27 6 4.4014 -9.0874 2.9075 28 8 4.8731 -8.0757 3.3698 29 8 4.6842 -10.2754 3.4647 30 6 2.2326 -3.6892 0.0022 31 1 -0.4850 0.8400 -0.0004 32 1 1.0251 -2.2837 2.1666 33 1 -0.5135 -2.1665 1.2503 34 1 -0.5494 -4.5302 0.7917 35 1 0.1094 -4.4954 2.4574 36 1 3.0304 -4.3426 2.4268 37 1 4.6005 -5.9426 0.6031 38 1 5.3660 -7.0341 1.7824 39 1 4.6671 -7.7409 -1.1034 40 1 6.2988 -7.3834 -0.4879 41 1 6.1316 -9.3033 1.0717 42 1 5.9122 -9.8290 -0.6144 43 1 4.2168 -10.8655 0.8695 44 1 3.4514 -9.7746 -0.3107 45 1 5.2690 -10.2710 4.2348 46 1 3.1975 -3.3772 0.4018 47 1 2.3548 -4.0737 -1.0104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188417.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:10 Heat of formation + Delta-G solvation = -202.309557 kcal Electronic energy + Delta-G solvation = -30452.364639 eV Core-core repulsion = 26339.374643 eV Total energy + Delta-G solvation = -4112.989997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93582 -39.38915 -38.76194 -38.03264 -37.07919 -36.82306 -35.23317 -33.38629 -32.42220 -31.97945 -29.84684 -28.34088 -25.72999 -25.69149 -24.06436 -22.75771 -21.38877 -21.17706 -20.82138 -20.01628 -18.89695 -18.69244 -18.38541 -18.00592 -17.27907 -16.88920 -16.62253 -16.56367 -15.99205 -15.91090 -15.51323 -15.08578 -14.81408 -14.65120 -14.23769 -14.08302 -13.76895 -13.70759 -13.39107 -13.34796 -13.29095 -13.18216 -12.94408 -12.91251 -12.80387 -12.64750 -12.51875 -12.40540 -12.34488 -12.02421 -11.81370 -11.71926 -11.56854 -11.38357 -11.25626 -11.03739 -11.01119 -10.89257 -10.75461 -10.42999 -10.18189 -8.07886 -6.16108 -0.68981 1.14694 1.41644 1.43677 1.52405 1.75129 2.00642 2.45853 2.80108 3.12288 3.19960 3.23648 3.64075 3.82931 3.84992 4.06159 4.08934 4.09396 4.19713 4.25615 4.27267 4.38263 4.40443 4.50844 4.71364 4.84061 4.87224 4.90549 4.97690 5.08310 5.13824 5.16348 5.17631 5.19395 5.25028 5.29539 5.31064 5.44824 5.49599 5.66628 5.69851 5.71808 5.96172 6.07255 6.15424 6.44323 6.94753 6.96284 7.51021 9.00734 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019900 B = 0.003093 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.701760 B = 9051.299564 C = 9481.322521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.010 3.990 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 H 0.007 0.993 11 C -0.095 4.095 12 C -0.139 4.139 13 C 0.157 3.843 14 H 0.109 0.891 15 N -1.105 6.105 16 S 2.594 3.406 17 O -0.996 6.996 18 O -0.963 6.963 19 C -0.557 4.557 20 H 0.180 0.820 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.096 4.096 25 C -0.072 4.072 26 H 0.136 0.864 27 C 0.438 3.562 28 O -0.489 6.489 29 O -0.507 6.507 30 C -0.112 4.112 31 H 0.257 0.743 32 H 0.029 0.971 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.427 0.573 46 H 0.067 0.933 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.233 -24.451 -1.087 26.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.018 3.982 10 H 0.025 0.975 11 C -0.133 4.133 12 C -0.178 4.178 13 C 0.050 3.950 14 H 0.127 0.873 15 N -0.864 5.864 16 S 2.691 3.309 17 O -0.986 6.986 18 O -0.953 6.953 19 C -0.669 4.669 20 H 0.198 0.802 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.165 4.165 24 C -0.134 4.134 25 C -0.093 4.093 26 H 0.154 0.846 27 C 0.279 3.721 28 O -0.376 6.376 29 O -0.322 6.322 30 C -0.151 4.151 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.252 0.748 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.126 0.874 45 H 0.289 0.711 46 H 0.085 0.915 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.568 -24.452 -0.464 26.261 hybrid contribution 0.778 1.895 0.535 2.117 sum 10.346 -22.557 0.071 24.817 Atomic orbital electron populations 1.70086 1.07188 1.26911 1.51788 1.25741 0.95581 1.02295 0.95252 0.85716 0.78776 0.79968 0.78134 1.20095 1.21596 1.19328 1.21621 0.93006 0.92009 1.49761 0.92566 1.19470 0.93201 0.92471 0.93056 0.97483 1.22248 0.99145 0.93267 0.98667 1.22903 0.97741 0.96549 1.00635 1.21449 0.88403 0.99342 0.85845 0.87324 1.55596 1.56489 1.26579 1.47727 1.05391 0.73890 0.74733 0.76899 1.93558 1.36318 1.83496 1.85207 1.93661 1.65032 1.84916 1.51694 1.30256 1.10935 1.05764 1.19934 0.80231 1.21638 0.91937 1.00586 1.01669 1.21509 1.01570 0.94641 0.97205 1.21661 0.96714 0.96344 1.01753 1.21549 0.97117 0.98752 0.95977 1.20965 1.00561 0.94506 0.93279 0.84647 1.23962 0.81751 0.81550 0.84855 1.91043 1.49426 1.35473 1.61705 1.84419 1.66096 1.33249 1.48388 1.22492 0.99226 0.94548 0.98810 0.93361 0.95191 0.94745 0.90714 0.92608 0.74808 0.89728 0.90055 0.89669 0.90986 0.93522 0.89061 0.88601 0.87438 0.71117 0.91478 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 12.29 21.45 0.26 -53.27 16 2 C 0.01 0.54 5.35 84.66 0.45 0.99 16 3 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.53 -28.02 8.46 25.60 0.22 -27.81 16 8 H 0.06 2.91 7.54 -2.91 -0.02 2.88 16 9 C 0.04 1.74 2.72 -10.47 -0.03 1.71 16 10 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 11 C -0.09 -4.44 5.75 31.89 0.18 -4.25 16 12 C -0.14 -5.19 6.54 31.67 0.21 -4.98 16 13 C 0.16 4.78 3.34 45.72 0.15 4.94 16 14 H 0.11 2.45 7.22 -2.39 -0.02 2.43 16 15 N -1.11 -32.50 4.97 -166.36 -0.83 -33.33 16 16 S 2.59 73.56 4.49 -56.49 -0.25 73.31 16 17 O -1.00 -33.62 17.82 -127.65 -2.27 -35.89 16 18 O -0.96 -34.06 14.14 -118.07 -1.67 -35.73 16 19 C -0.56 -9.98 2.35 30.60 0.07 -9.91 16 20 H 0.18 2.02 7.48 -2.39 -0.02 2.01 16 21 C -0.12 -2.21 4.81 30.60 0.15 -2.06 16 22 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 23 C -0.13 -1.37 5.70 30.59 0.17 -1.20 16 24 C -0.10 -0.88 5.39 30.58 0.16 -0.71 16 25 C -0.07 -1.11 2.65 -11.55 -0.03 -1.14 16 26 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 27 C 0.44 8.78 5.77 71.24 0.41 9.19 16 28 O -0.49 -13.61 10.47 29.96 0.31 -13.29 16 29 O -0.51 -7.12 13.32 -51.47 -0.69 -7.81 16 30 C -0.11 -3.91 6.13 31.32 0.19 -3.72 16 31 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.03 1.46 8.05 -2.38 -0.02 1.44 16 33 H 0.03 1.78 7.55 -2.39 -0.02 1.77 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 36 H 0.42 12.60 8.63 -96.75 -0.83 11.77 16 37 H 0.08 1.56 7.91 -2.39 -0.02 1.54 16 38 H 0.08 1.89 5.50 -2.39 -0.01 1.88 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.64 7.21 -2.39 -0.02 0.62 16 42 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.10 0.68 8.11 -2.39 -0.02 0.66 16 44 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.43 2.99 9.10 -74.06 -0.67 2.31 16 46 H 0.07 2.35 7.26 -2.39 -0.02 2.33 16 47 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -77.82 372.32 -1.12 -78.94 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.51 Total: 21.64 kcal Atomic # 6 Polarization: -42.69 SS G_CDS: 2.50 Total: -40.19 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -0.56 Total: -86.60 kcal Atomic # 8 Polarization: -88.41 SS G_CDS: -4.32 Total: -92.73 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 73.56 SS G_CDS: -0.25 Total: 73.31 kcal Total: -77.82 -1.12 -78.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188417.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.365 kcal (2) G-P(sol) polarization free energy of solvation -77.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds