Wall clock time and date at job start Wed Apr 1 2020 03:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00025 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00035 * 179.97438 * 12 11 10 15 15 C 1.47148 * 120.97324 * 0.02562 * 14 12 11 16 16 C 1.53303 * 108.37275 * 129.50405 * 15 14 12 17 17 O 1.42940 * 109.22610 * 52.22332 * 16 15 14 18 18 C 1.43079 * 114.16275 * 297.30363 * 17 16 15 19 19 C 1.52700 * 109.42120 * 303.31633 * 18 17 16 20 20 C 1.53026 * 109.96119 * 309.75304 * 19 18 17 21 21 S 1.81680 * 108.99684 * 296.22565 * 20 19 18 22 22 O 1.42094 * 108.66238 * 299.90907 * 21 20 19 23 23 O 1.42108 * 108.74897 * 168.59513 * 21 20 19 24 24 C 1.81671 * 101.29253 * 54.23920 * 21 20 19 25 25 C 1.52705 * 109.39153 * 182.24265 * 18 17 16 26 26 C 1.47129 * 120.97629 * 179.72326 * 14 12 11 27 27 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 29 29 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 30 30 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 31 31 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 32 32 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 33 33 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 34 34 H 1.08999 * 109.68266 * 249.22215 * 15 14 12 35 35 H 1.08993 * 109.68746 * 9.78219 * 15 14 12 36 36 H 1.09001 * 109.51405 * 172.14723 * 16 15 14 37 37 H 1.08997 * 109.51436 * 292.29515 * 16 15 14 38 38 H 1.09005 * 109.39200 * 69.90118 * 19 18 17 39 39 H 1.08997 * 109.39116 * 189.60872 * 19 18 17 40 40 H 1.08997 * 109.55208 * 176.36630 * 20 19 18 41 41 H 1.09005 * 109.63076 * 56.12628 * 20 19 18 42 42 H 1.08992 * 109.54538 * 185.87509 * 24 21 20 43 43 H 1.08995 * 109.62727 * 65.62999 * 24 21 20 44 44 H 1.08995 * 109.39602 * 170.39151 * 25 18 17 45 45 H 1.09002 * 109.39597 * 290.21081 * 25 18 17 46 46 H 1.09000 * 109.68303 * 350.41253 * 26 14 12 47 47 H 1.09001 * 109.68121 * 110.96875 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4593 -6.1327 0.0005 13 8 3.6518 -5.9111 0.0001 14 7 2.0101 -7.4033 0.0015 15 6 0.5681 -7.6967 0.0026 16 6 0.2784 -8.7005 -1.1193 17 8 1.1558 -9.8211 -0.9864 18 6 2.5429 -9.4984 -1.1243 19 6 2.7751 -8.8211 -2.4730 20 6 2.1417 -9.6523 -3.5909 21 16 2.9779 -11.2630 -3.6766 22 8 4.3551 -11.0463 -3.9516 23 8 2.2267 -12.1232 -4.5222 24 6 2.8113 -11.8419 -1.9626 25 6 3.3734 -10.7756 -1.0198 26 6 2.9469 -8.5378 -0.0052 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8718 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 0.8537 -5.0446 0.8914 33 1 0.8531 -5.0451 -0.8886 34 1 0.2816 -8.1262 0.9625 35 1 0.0066 -6.7790 -0.1719 36 1 -0.7558 -9.0375 -1.0483 37 1 0.4410 -8.2234 -2.0857 38 1 2.3256 -7.8281 -2.4614 39 1 3.8463 -8.7299 -2.6525 40 1 2.2550 -9.1315 -4.5416 41 1 1.0826 -9.8019 -3.3809 42 1 3.3674 -12.7707 -1.8358 43 1 1.7593 -12.0125 -1.7345 44 1 4.4062 -10.5592 -1.2928 45 1 3.3398 -11.1464 0.0047 46 1 3.9600 -8.1763 -0.1814 47 1 2.9028 -9.0559 0.9528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617537394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:19 Heat of formation + Delta-G solvation = -155.973857 kcal Electronic energy + Delta-G solvation = -29437.501374 eV Core-core repulsion = 25326.520644 eV Total energy + Delta-G solvation = -4110.980730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24006 -39.09749 -37.41034 -36.38943 -35.80301 -34.84216 -34.30618 -32.49224 -32.17146 -30.87703 -28.83485 -27.64127 -25.23034 -24.45250 -23.80046 -23.17520 -20.72435 -20.19832 -19.30857 -19.00242 -17.65578 -17.24950 -16.84195 -16.69779 -16.30117 -16.19197 -15.83029 -15.75040 -15.54547 -15.21795 -14.51281 -14.42670 -14.06515 -13.92237 -13.80613 -13.60994 -13.17592 -12.98485 -12.67149 -12.51650 -12.47276 -12.37344 -12.29802 -12.21761 -11.89674 -11.84499 -11.73894 -11.45333 -11.16147 -11.06572 -10.85594 -10.67917 -10.63002 -10.57579 -10.35139 -9.78927 -9.75394 -9.34706 -9.08670 -8.78656 -8.36842 -6.02619 -4.04120 -0.36595 2.25635 2.65383 2.70424 3.05362 3.26747 3.31564 3.37638 3.42279 3.49348 3.90275 4.00114 4.08325 4.12693 4.39351 4.44333 4.45418 4.54990 4.63273 4.73108 4.75690 4.86703 4.96304 5.05362 5.14232 5.22488 5.28544 5.32011 5.33723 5.37172 5.42017 5.52332 5.53680 5.57872 5.59044 6.08595 6.21276 6.55698 6.62887 6.83711 7.07270 7.21828 7.64329 7.76255 7.97532 8.20147 8.41335 9.02857 9.60204 11.08879 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.002200 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.629850 B =12726.374255 C =12984.875487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.517 3.483 13 O -0.530 6.530 14 N -0.625 5.625 15 C 0.072 3.928 16 C 0.037 3.963 17 O -0.367 6.367 18 C 0.089 3.911 19 C -0.137 4.137 20 C -0.598 4.598 21 S 2.414 3.586 22 O -0.937 6.937 23 O -0.944 6.944 24 C -0.595 4.595 25 C -0.094 4.094 26 C 0.093 3.907 27 H 0.260 0.740 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.106 0.894 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -26.868 -2.448 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.307 3.693 13 O -0.405 6.405 14 N -0.361 5.361 15 C -0.051 4.051 16 C -0.040 4.040 17 O -0.286 6.286 18 C 0.048 3.952 19 C -0.175 4.175 20 C -0.728 4.728 21 S 2.597 3.403 22 O -0.935 6.935 23 O -0.942 6.942 24 C -0.724 4.724 25 C -0.132 4.132 26 C -0.030 4.030 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.124 0.876 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.894 -27.199 -3.138 27.394 hybrid contribution -0.226 1.538 0.628 1.677 sum 0.668 -25.661 -2.510 25.792 Atomic orbital electron populations 1.69956 1.06050 1.26608 1.51123 1.25020 0.94861 0.99284 0.95316 0.86588 0.79908 0.83364 0.78139 1.20649 1.21233 1.19822 1.21259 0.93192 0.90977 1.50284 0.92573 1.19121 0.93916 0.91458 0.97077 1.21469 0.98682 0.91424 1.01761 1.21889 0.98183 0.94038 1.03592 1.21354 0.90379 0.83145 0.74409 1.90687 1.17266 1.83922 1.48634 1.48252 1.06514 1.05669 1.75685 1.22437 0.81653 1.00938 1.00069 1.23146 0.94706 0.87862 0.98310 1.87976 1.14861 1.32715 1.93054 1.21958 0.83418 0.95034 0.94741 1.21910 1.03326 1.00991 0.91304 1.30137 1.14059 1.21031 1.07535 1.08126 0.76082 0.78044 0.78093 1.93598 1.31067 1.85518 1.83283 1.93597 1.73351 1.63777 1.63431 1.30074 1.12021 1.08807 1.21544 1.21285 0.98949 0.90898 1.02073 1.22028 0.95980 0.87069 0.97956 0.93029 0.96667 0.96617 0.92632 0.92666 0.89234 0.89393 0.90318 0.87864 0.87044 0.91660 0.88594 0.88261 0.84500 0.84418 0.84623 0.83779 0.87991 0.88279 0.87560 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.40 16 10 C -0.10 -1.96 4.44 -26.73 -0.12 -2.08 16 11 C -0.14 -2.08 4.07 -27.88 -0.11 -2.20 16 12 C 0.52 7.54 7.71 -10.99 -0.08 7.46 16 13 O -0.53 -9.73 15.45 5.56 0.09 -9.65 16 14 N -0.62 -6.55 2.35 -172.53 -0.41 -6.96 16 15 C 0.07 0.54 6.55 -3.53 -0.02 0.52 16 16 C 0.04 0.22 6.12 37.31 0.23 0.45 16 17 O -0.37 -2.45 8.23 -35.23 -0.29 -2.74 16 18 C 0.09 0.62 0.67 -90.97 -0.06 0.56 16 19 C -0.14 -1.03 3.99 -26.87 -0.11 -1.14 16 20 C -0.60 -3.73 5.95 37.17 0.22 -3.50 16 21 S 2.41 18.21 5.31 -107.50 -0.57 17.64 16 22 O -0.94 -10.17 17.94 -57.82 -1.04 -11.21 16 23 O -0.94 -10.41 18.11 -57.82 -1.05 -11.46 16 24 C -0.59 -2.92 6.17 37.17 0.23 -2.69 16 25 C -0.09 -0.49 4.84 -26.87 -0.13 -0.62 16 26 C 0.09 0.83 5.25 -3.74 -0.02 0.81 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 32 H 0.09 1.24 8.02 -51.93 -0.42 0.82 16 33 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.73 6.05 -51.93 -0.31 0.42 16 36 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.39 5.80 -51.93 -0.30 0.09 16 38 H 0.10 0.84 6.39 -51.93 -0.33 0.50 16 39 H 0.10 0.75 8.00 -51.93 -0.42 0.33 16 40 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.14 0.68 6.46 -51.92 -0.34 0.34 16 42 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.14 0.60 7.35 -51.93 -0.38 0.22 16 44 H 0.10 0.48 7.99 -51.93 -0.42 0.06 16 45 H 0.10 0.41 8.03 -51.93 -0.42 -0.01 16 46 H 0.11 1.08 7.07 -51.93 -0.37 0.71 16 47 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -38.07 374.77 -9.86 -47.93 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -7.43 Total: -4.45 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.53 Total: -15.57 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.33 Total: -32.83 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -2.29 Total: -35.06 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 18.21 SS G_CDS: -0.57 Total: 17.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.07 -9.86 -47.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617537394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.040 kcal (2) G-P(sol) polarization free energy of solvation -38.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds