Wall clock time and date at job start Wed Apr 1 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 O 1.21282 * 120.00025 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00035 * 179.97438 * 12 11 10 15 15 C 1.47148 * 120.97324 * 0.02562 * 14 12 11 16 16 C 1.53303 * 108.37275 * 129.50405 * 15 14 12 17 17 O 1.42940 * 109.22610 * 52.22332 * 16 15 14 18 18 C 1.43079 * 114.16275 * 297.30363 * 17 16 15 19 19 C 1.52700 * 109.42120 * 303.31633 * 18 17 16 20 20 C 1.53026 * 109.96119 * 309.75304 * 19 18 17 21 21 S 1.81680 * 108.99684 * 296.22565 * 20 19 18 22 22 O 1.42094 * 108.66238 * 299.90907 * 21 20 19 23 23 O 1.42108 * 108.74897 * 168.59513 * 21 20 19 24 24 C 1.81671 * 101.29253 * 54.23920 * 21 20 19 25 25 C 1.52705 * 109.39153 * 182.24265 * 18 17 16 26 26 C 1.47129 * 120.97629 * 179.72326 * 14 12 11 27 27 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 29 29 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 30 30 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 31 31 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 32 32 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 33 33 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 34 34 H 1.08999 * 109.68266 * 249.22215 * 15 14 12 35 35 H 1.08993 * 109.68746 * 9.78219 * 15 14 12 36 36 H 1.09001 * 109.51405 * 172.14723 * 16 15 14 37 37 H 1.08997 * 109.51436 * 292.29515 * 16 15 14 38 38 H 1.09005 * 109.39200 * 69.90118 * 19 18 17 39 39 H 1.08997 * 109.39116 * 189.60872 * 19 18 17 40 40 H 1.08997 * 109.55208 * 176.36630 * 20 19 18 41 41 H 1.09005 * 109.63076 * 56.12628 * 20 19 18 42 42 H 1.08992 * 109.54538 * 185.87509 * 24 21 20 43 43 H 1.08995 * 109.62727 * 65.62999 * 24 21 20 44 44 H 1.08995 * 109.39602 * 170.39151 * 25 18 17 45 45 H 1.09002 * 109.39597 * 290.21081 * 25 18 17 46 46 H 1.09000 * 109.68303 * 350.41253 * 26 14 12 47 47 H 1.09001 * 109.68121 * 110.96875 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4593 -6.1327 0.0005 13 8 3.6518 -5.9111 0.0001 14 7 2.0101 -7.4033 0.0015 15 6 0.5681 -7.6967 0.0026 16 6 0.2784 -8.7005 -1.1193 17 8 1.1558 -9.8211 -0.9864 18 6 2.5429 -9.4984 -1.1243 19 6 2.7751 -8.8211 -2.4730 20 6 2.1417 -9.6523 -3.5909 21 16 2.9779 -11.2630 -3.6766 22 8 4.3551 -11.0463 -3.9516 23 8 2.2267 -12.1232 -4.5222 24 6 2.8113 -11.8419 -1.9626 25 6 3.3734 -10.7756 -1.0198 26 6 2.9469 -8.5378 -0.0052 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8718 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 0.8537 -5.0446 0.8914 33 1 0.8531 -5.0451 -0.8886 34 1 0.2816 -8.1262 0.9625 35 1 0.0066 -6.7790 -0.1719 36 1 -0.7558 -9.0375 -1.0483 37 1 0.4410 -8.2234 -2.0857 38 1 2.3256 -7.8281 -2.4614 39 1 3.8463 -8.7299 -2.6525 40 1 2.2550 -9.1315 -4.5416 41 1 1.0826 -9.8019 -3.3809 42 1 3.3674 -12.7707 -1.8358 43 1 1.7593 -12.0125 -1.7345 44 1 4.4062 -10.5592 -1.2928 45 1 3.3398 -11.1464 0.0047 46 1 3.9600 -8.1763 -0.1814 47 1 2.9028 -9.0559 0.9528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617537394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:18 Heat of formation + Delta-G solvation = -183.915305 kcal Electronic energy + Delta-G solvation = -29438.713006 eV Core-core repulsion = 25326.520644 eV Total energy + Delta-G solvation = -4112.192362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.95001 -40.09501 -38.11707 -37.10002 -36.49076 -36.18341 -35.51492 -34.05741 -33.00484 -31.56475 -30.07653 -28.78979 -26.36956 -25.07574 -24.95472 -24.01981 -22.19269 -21.10043 -20.01998 -19.84082 -18.60453 -18.25237 -17.98955 -17.45952 -17.38123 -17.00838 -16.70767 -16.58475 -16.37982 -16.22516 -15.96136 -15.42058 -14.94731 -14.72154 -14.49907 -14.32875 -14.19678 -13.97778 -13.82507 -13.74388 -13.22904 -13.17570 -13.14349 -13.11057 -12.96872 -12.85961 -12.64823 -12.51605 -12.44799 -12.33773 -12.26840 -11.75217 -11.65627 -11.57886 -11.46426 -11.30905 -11.21939 -10.88866 -10.72125 -10.55081 -9.59673 -8.21518 -6.30981 -0.93256 1.39180 1.39603 1.51156 1.56850 1.72329 1.82222 2.40599 2.53699 2.71488 2.92333 3.11802 3.37310 3.43481 3.50962 3.62911 3.63314 3.89062 3.98865 4.05758 4.14708 4.19780 4.24240 4.28552 4.32396 4.44081 4.46420 4.57726 4.71150 4.71357 4.77134 4.81501 4.88794 4.92737 4.93934 5.02985 5.07570 5.09679 5.17679 5.40857 5.53277 5.74438 5.85653 6.02839 6.22807 6.29760 6.84436 7.11660 7.37742 8.89893 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022083 B = 0.002200 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.629850 B =12726.374255 C =12984.875487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.129 4.129 12 C 0.518 3.482 13 O -0.578 6.578 14 N -0.614 5.614 15 C 0.064 3.936 16 C 0.034 3.966 17 O -0.363 6.363 18 C 0.095 3.905 19 C -0.142 4.142 20 C -0.590 4.590 21 S 2.414 3.586 22 O -0.979 6.979 23 O -0.984 6.984 24 C -0.573 4.573 25 C -0.098 4.098 26 C 0.087 3.913 27 H 0.265 0.735 28 H 0.002 0.998 29 H 0.001 0.999 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.105 0.895 45 H 0.121 0.879 46 H 0.089 0.911 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -28.192 -1.665 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.168 4.168 12 C 0.308 3.692 13 O -0.458 6.458 14 N -0.348 5.348 15 C -0.058 4.058 16 C -0.043 4.043 17 O -0.281 6.281 18 C 0.055 3.945 19 C -0.181 4.181 20 C -0.720 4.720 21 S 2.601 3.399 22 O -0.976 6.976 23 O -0.981 6.981 24 C -0.706 4.706 25 C -0.136 4.136 26 C -0.036 4.036 27 H 0.074 0.926 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.126 0.874 36 H 0.158 0.842 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.161 0.839 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.179 0.821 44 H 0.123 0.877 45 H 0.139 0.861 46 H 0.107 0.893 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.133 -28.574 -2.392 28.674 hybrid contribution 0.021 1.938 0.445 1.988 sum -0.112 -26.636 -1.947 26.707 Atomic orbital electron populations 1.70052 1.07418 1.27785 1.51585 1.25873 0.95810 1.02950 0.94717 0.85538 0.78663 0.78887 0.78534 1.19758 1.20293 1.19366 1.21691 0.93302 0.92880 1.50698 0.93195 1.19000 0.94142 0.92243 0.95557 1.21164 0.97630 0.93031 1.00203 1.21702 0.97986 0.91628 1.05508 1.21085 0.89323 0.84384 0.74411 1.90672 1.18911 1.84845 1.51339 1.48196 1.08363 1.04670 1.73601 1.22758 0.79454 1.01908 1.01705 1.23320 0.96000 0.87420 0.97557 1.87990 1.14420 1.32827 1.92888 1.21886 0.84073 0.95274 0.93291 1.21933 1.03059 1.00714 0.92347 1.30049 1.14712 1.19692 1.07554 1.07873 0.74832 0.77988 0.79222 1.93544 1.33241 1.86099 1.84739 1.93544 1.73708 1.65011 1.65884 1.29906 1.13575 1.09432 1.17666 1.21394 0.98825 0.90068 1.03351 1.22213 0.94903 0.86744 0.99697 0.92646 0.97985 0.98017 0.94252 0.94175 0.87434 0.87344 0.88717 0.87383 0.84154 0.91692 0.89797 0.88904 0.83912 0.82610 0.82349 0.82096 0.87661 0.86107 0.89295 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.55 -31.67 9.11 25.60 0.23 -31.44 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.47 4.44 30.60 0.14 -3.33 16 11 C -0.13 -3.83 4.07 29.85 0.12 -3.71 16 12 C 0.52 14.92 7.71 87.66 0.68 15.60 16 13 O -0.58 -21.76 15.45 -3.04 -0.05 -21.81 16 14 N -0.61 -11.89 2.35 -818.14 -1.92 -13.81 16 15 C 0.06 0.76 6.55 86.36 0.57 1.33 16 16 C 0.03 0.29 6.12 72.08 0.44 0.73 16 17 O -0.36 -3.53 8.23 -148.98 -1.23 -4.76 16 18 C 0.10 1.11 0.67 -11.02 -0.01 1.11 16 19 C -0.14 -2.00 3.99 30.50 0.12 -1.88 16 20 C -0.59 -6.59 5.95 71.99 0.43 -6.16 16 21 S 2.41 34.41 5.31 -56.49 -0.30 34.11 16 22 O -0.98 -21.48 17.94 -127.38 -2.28 -23.76 16 23 O -0.98 -21.31 18.11 -127.38 -2.31 -23.61 16 24 C -0.57 -3.94 6.17 71.99 0.44 -3.49 16 25 C -0.10 -0.76 4.84 30.51 0.15 -0.61 16 26 C 0.09 1.41 5.25 86.23 0.45 1.86 16 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 29 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 31 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.11 2.82 8.02 -2.39 -0.02 2.80 16 33 H 0.11 2.77 7.66 -2.39 -0.02 2.75 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 1.22 6.05 -2.39 -0.01 1.20 16 36 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 0.59 5.80 -2.39 -0.01 0.58 16 38 H 0.08 1.40 6.39 -2.38 -0.02 1.39 16 39 H 0.09 1.42 8.00 -2.39 -0.02 1.40 16 40 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.16 1.15 6.46 -2.39 -0.02 1.14 16 42 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.16 0.68 7.35 -2.39 -0.02 0.67 16 44 H 0.11 0.80 7.99 -2.39 -0.02 0.78 16 45 H 0.12 0.52 8.03 -2.39 -0.02 0.50 16 46 H 0.09 1.79 7.07 -2.39 -0.02 1.78 16 47 H 0.10 1.24 8.05 -2.39 -0.02 1.22 16 Total: -1.00 -84.24 374.77 -0.44 -84.68 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 0.97 Total: 5.09 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 4.37 Total: -27.70 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -1.64 Total: -68.88 kcal Atomic # 8 Polarization: -68.08 SS G_CDS: -5.86 Total: -73.94 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 34.41 SS G_CDS: -0.30 Total: 34.11 kcal Total: -84.24 -0.44 -84.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617537394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.233 kcal (2) G-P(sol) polarization free energy of solvation -84.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds