Wall clock time and date at job start Wed Apr 1 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47017 * 271.67026 * 3 2 1 5 5 H 1.48495 * 109.46959 * 31.66549 * 3 2 1 6 6 H 1.48499 * 109.46872 * 151.66811 * 3 2 1 7 7 C 1.37870 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00569 * 355.17028 * 7 2 1 9 9 C 1.50702 * 119.99971 * 175.16333 * 7 2 1 10 10 C 1.53003 * 113.00225 * 300.41604 * 9 7 2 11 11 O 1.45205 * 109.46536 * 291.21610 * 10 9 7 12 12 C 1.34233 * 116.99475 * 175.35394 * 11 10 9 13 13 O 1.20824 * 120.00017 * 4.48309 * 12 11 10 14 14 C 1.50703 * 119.99940 * 184.48071 * 12 11 10 15 15 C 1.50704 * 110.85304 * 293.74160 * 14 12 11 16 16 C 1.38227 * 120.00564 * 351.56010 * 15 14 12 17 17 C 1.38231 * 120.00571 * 180.02562 * 16 15 14 18 18 C 1.38236 * 119.99651 * 359.95993 * 17 16 15 19 19 C 1.38232 * 119.99966 * 0.27694 * 18 17 16 20 20 C 1.38234 * 120.00131 * 359.52946 * 19 18 17 21 21 C 1.54478 * 110.96886 * 169.95024 * 14 12 11 22 22 N 1.46762 * 105.47554 * 267.25903 * 21 14 12 23 23 C 1.34423 * 111.29800 * 342.98991 * 22 21 14 24 24 O 1.21276 * 124.94104 * 180.41160 * 23 22 21 25 25 C 1.51287 * 110.11751 * 0.40220 * 23 22 21 26 26 C 1.54040 * 113.92423 * 72.34587 * 9 7 2 27 27 O 1.44176 * 85.51836 * 91.66300 * 26 9 7 28 28 C 1.44180 * 93.34212 * 24.18996 * 27 26 9 29 29 H 0.96999 * 120.00229 * 5.01861 * 1 2 3 30 30 H 1.08996 * 109.47357 * 171.21969 * 10 9 7 31 31 H 1.08991 * 109.47136 * 51.21551 * 10 9 7 32 32 H 1.08009 * 119.99839 * 0.02562 * 16 15 14 33 33 H 1.07995 * 120.00160 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.00032 * 179.97438 * 18 17 16 35 35 H 1.08000 * 120.00142 * 179.72307 * 19 18 17 36 36 H 1.07999 * 120.00494 * 180.21170 * 20 19 18 37 37 H 1.08997 * 110.24629 * 26.26319 * 21 14 12 38 38 H 1.09001 * 110.24135 * 148.17124 * 21 14 12 39 39 H 0.96996 * 124.34967 * 162.96174 * 22 21 14 40 40 H 1.09000 * 110.48244 * 257.57703 * 25 23 22 41 41 H 1.08993 * 110.48298 * 134.93645 * 25 23 22 42 42 H 1.09005 * 113.86351 * 205.80887 * 26 9 7 43 43 H 1.09002 * 113.86218 * 337.51155 * 26 9 7 44 44 H 1.08994 * 113.86719 * 221.65991 * 28 27 26 45 45 H 1.08999 * 113.86171 * 89.95539 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4612 2.0669 -1.3994 5 1 1.4646 2.6422 0.7350 6 1 3.5638 1.4303 0.6644 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1276 0.0797 9 6 3.5075 -1.1963 -0.1095 10 6 4.0140 -0.5366 -1.3937 11 8 3.6615 -1.3636 -2.5340 12 6 3.9505 -0.8778 -3.7516 13 8 4.5527 0.1642 -3.8589 14 6 3.5240 -1.6321 -4.9845 15 6 4.2550 -2.9458 -5.0895 16 6 5.2953 -3.2290 -4.2244 17 6 5.9662 -4.4337 -4.3210 18 6 5.5962 -5.3557 -5.2823 19 6 4.5591 -5.0704 -6.1506 20 6 3.8856 -3.8673 -6.0514 21 6 3.7347 -0.7790 -6.2550 22 7 2.4577 -0.0922 -6.4819 23 6 1.4609 -0.6749 -5.7935 24 8 0.3035 -0.3130 -5.8067 25 6 1.9930 -1.8480 -5.0000 26 6 4.2278 -0.7135 1.1636 27 8 4.2459 -2.1040 1.5444 28 6 4.1504 -2.5655 0.1818 29 1 -0.4850 0.8368 -0.0735 30 1 5.0975 -0.4290 -1.3441 31 1 3.5558 0.4464 -1.5023 32 1 5.5840 -2.5089 -3.4729 33 1 6.7792 -4.6548 -3.6454 34 1 6.1206 -6.2968 -5.3581 35 1 4.2729 -5.7888 -6.9045 36 1 3.0731 -3.6459 -6.7275 37 1 4.5306 -0.0520 -6.0934 38 1 3.9761 -1.4193 -7.1035 39 1 2.3473 0.6828 -7.0546 40 1 1.7451 -2.7871 -5.4949 41 1 1.5953 -1.8339 -3.9853 42 1 5.2167 -0.2940 0.9786 43 1 3.6111 -0.0876 1.8087 44 1 3.4724 -3.4084 0.0482 45 1 5.1156 -2.7115 -0.3030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649232956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:52 Heat of formation + Delta-G solvation = -84.134157 kcal Electronic energy + Delta-G solvation = -31796.998181 eV Core-core repulsion = 27553.688703 eV Total energy + Delta-G solvation = -4243.309478 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53340 -39.89127 -39.20261 -39.02296 -36.62771 -35.87694 -33.22648 -32.87261 -31.16789 -30.68249 -29.67073 -27.67469 -25.94626 -25.78330 -24.67055 -23.89640 -22.81565 -21.99459 -20.67403 -19.81373 -19.06529 -17.99747 -17.67432 -17.14586 -16.60703 -16.15489 -16.00632 -15.51121 -15.41875 -15.15478 -14.92266 -14.76348 -14.67030 -14.28095 -13.95363 -13.89298 -13.58201 -13.38422 -13.35758 -12.93421 -12.88260 -12.68263 -12.57027 -11.99650 -11.84080 -11.79348 -11.38744 -11.24804 -11.02704 -10.70801 -10.54632 -10.42366 -10.23498 -9.97086 -9.93399 -9.60281 -9.25120 -9.24362 -9.08265 -8.92828 -8.84751 -8.58670 -6.23668 -4.25691 1.08085 1.22345 2.26875 2.57804 2.79781 3.12132 3.16113 3.25680 3.25992 3.52094 4.07064 4.18332 4.21168 4.35296 4.54925 4.66629 4.71794 4.81561 4.86401 4.98056 5.01800 5.22296 5.28839 5.37501 5.40257 5.46323 5.52828 5.60843 5.73645 5.83211 5.86798 5.87168 5.88293 5.96146 5.99351 6.25246 6.31432 6.34652 6.48938 6.53594 6.68665 6.75739 6.81864 6.91063 6.94938 6.98090 7.49809 7.95994 8.20328 8.32911 8.80111 9.33596 10.87420 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.005133 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.821017 B = 5453.438486 C = 7103.068466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.081 3.919 3 Si 0.852 3.148 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.251 1.251 7 C -0.489 4.489 8 H 0.086 0.914 9 C -0.006 4.006 10 C 0.068 3.932 11 O -0.317 6.317 12 C 0.472 3.528 13 O -0.508 6.508 14 C -0.025 4.025 15 C -0.066 4.066 16 C -0.098 4.098 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.107 4.107 21 C 0.120 3.880 22 N -0.732 5.732 23 C 0.520 3.480 24 O -0.520 6.520 25 C -0.147 4.147 26 C 0.031 3.969 27 O -0.377 6.377 28 C 0.049 3.951 29 H 0.269 0.731 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.413 0.587 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 -7.459 -14.577 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.123 4.123 3 Si 0.681 3.319 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.175 1.175 7 C -0.526 4.526 8 H 0.104 0.896 9 C -0.008 4.008 10 C -0.005 4.005 11 O -0.231 6.231 12 C 0.314 3.686 13 O -0.397 6.397 14 C -0.027 4.027 15 C -0.066 4.066 16 C -0.116 4.116 17 C -0.130 4.130 18 C -0.134 4.134 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.005 4.005 22 N -0.389 5.389 23 C 0.306 3.694 24 O -0.395 6.395 25 C -0.187 4.187 26 C -0.046 4.046 27 O -0.296 6.296 28 C -0.028 4.028 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.252 0.748 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.073 0.927 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.044 -7.071 -14.145 19.878 hybrid contribution 0.489 1.696 -0.369 1.804 sum 12.533 -5.375 -14.514 19.915 Atomic orbital electron populations 1.69813 1.06029 1.27549 1.48294 1.24916 0.94704 0.98567 0.94145 0.87450 0.81160 0.84785 0.78545 1.20306 1.21037 1.17524 1.20383 0.86020 0.95146 1.51049 0.89556 1.21668 0.98692 0.92432 0.87975 1.23908 0.97819 0.94445 0.84340 1.86559 1.74624 1.48192 1.13762 1.22789 0.76291 0.83750 0.85794 1.90630 1.38212 1.23364 1.87534 1.20180 0.96968 0.93708 0.91794 1.19044 0.96683 0.93277 0.97619 1.21102 0.95017 0.97630 0.97896 1.21131 0.99855 0.93547 0.98436 1.21206 0.97376 0.99304 0.95474 1.21091 0.96209 0.96690 0.99461 1.20907 0.99909 0.93671 0.98046 1.22136 0.87357 0.96364 0.94635 1.46163 1.09212 1.33665 1.49845 1.20807 0.85170 0.84126 0.79283 1.90788 1.17511 1.66952 1.64290 1.22672 0.91374 0.99338 1.05329 1.24450 0.97849 0.84926 0.97414 1.89558 1.95480 1.19318 1.25229 1.23836 0.97953 0.98765 0.82262 0.92115 0.92867 0.91957 0.86083 0.85653 0.85905 0.85716 0.85590 0.88070 0.89299 0.74777 0.85972 0.85197 0.92691 0.89213 0.89462 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.28 13.95 55.43 0.77 -25.51 16 2 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 3 Si 0.85 20.66 23.72 -169.99 -4.03 16.63 16 4 H -0.28 -6.88 6.83 56.52 0.39 -6.50 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.25 -5.44 4.94 56.52 0.28 -5.16 16 7 C -0.49 -13.05 8.86 -34.44 -0.31 -13.36 16 8 H 0.09 2.53 8.04 -52.49 -0.42 2.10 16 9 C -0.01 -0.14 0.45 -154.57 -0.07 -0.21 16 10 C 0.07 1.42 4.36 37.16 0.16 1.59 16 11 O -0.32 -6.16 8.95 -39.27 -0.35 -6.51 16 12 C 0.47 8.20 4.99 36.01 0.18 8.38 16 13 O -0.51 -9.70 15.25 -18.75 -0.29 -9.99 16 14 C -0.02 -0.33 0.80 -155.18 -0.12 -0.45 16 15 C -0.07 -0.75 4.91 -104.62 -0.51 -1.26 16 16 C -0.10 -1.16 9.02 -39.59 -0.36 -1.52 16 17 C -0.11 -1.09 10.05 -39.58 -0.40 -1.49 16 18 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 19 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 20 C -0.11 -0.98 8.23 -39.58 -0.33 -1.31 16 21 C 0.12 1.30 6.69 -3.12 -0.02 1.28 16 22 N -0.73 -9.02 6.24 -59.20 -0.37 -9.39 16 23 C 0.52 8.31 8.43 -10.86 -0.09 8.22 16 24 O -0.52 -10.54 18.03 5.56 0.10 -10.44 16 25 C -0.15 -2.09 5.82 -26.74 -0.16 -2.25 16 26 C 0.03 0.65 6.39 37.61 0.24 0.89 16 27 O -0.38 -8.23 12.40 -35.23 -0.44 -8.66 16 28 C 0.05 0.96 8.22 37.61 0.31 1.27 16 29 H 0.27 7.61 8.32 -40.82 -0.34 7.27 16 30 H 0.05 0.98 8.00 -51.93 -0.42 0.56 16 31 H 0.06 1.44 3.88 -51.93 -0.20 1.24 16 32 H 0.12 1.58 6.25 -52.48 -0.33 1.25 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.93 7.14 -52.49 -0.37 0.55 16 37 H 0.10 1.14 6.91 -51.93 -0.36 0.78 16 38 H 0.09 0.69 7.40 -51.93 -0.38 0.31 16 39 H 0.41 4.28 8.96 -40.82 -0.37 3.91 16 40 H 0.12 1.36 6.34 -51.93 -0.33 1.03 16 41 H 0.13 2.23 7.62 -51.93 -0.40 1.84 16 42 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 43 H 0.09 1.96 6.41 -51.93 -0.33 1.63 16 44 H 0.09 1.71 8.08 -51.93 -0.42 1.29 16 45 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 363.79 15.07 5.48 5.48 Total: -1.00 -34.09 363.79 -7.19 -41.28 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.71 Total: 7.92 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -2.36 Total: -0.81 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 0.40 Total: -34.90 kcal Atomic # 8 Polarization: -34.63 SS G_CDS: -0.97 Total: -35.60 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.03 Total: 16.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.09 -7.19 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649232956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.859 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds