Wall clock time and date at job start Wed Apr 1 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99826 * 2 1 4 4 H 1.48495 * 109.47017 * 271.67026 * 3 2 1 5 5 H 1.48495 * 109.46959 * 31.66549 * 3 2 1 6 6 H 1.48499 * 109.46872 * 151.66811 * 3 2 1 7 7 C 1.37870 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00569 * 355.17028 * 7 2 1 9 9 C 1.50702 * 119.99971 * 175.16333 * 7 2 1 10 10 C 1.53003 * 113.00225 * 300.41604 * 9 7 2 11 11 O 1.45205 * 109.46536 * 291.21610 * 10 9 7 12 12 C 1.34233 * 116.99475 * 175.35394 * 11 10 9 13 13 O 1.20824 * 120.00017 * 4.48309 * 12 11 10 14 14 C 1.50703 * 119.99940 * 184.48071 * 12 11 10 15 15 C 1.50704 * 110.85304 * 293.74160 * 14 12 11 16 16 C 1.38227 * 120.00564 * 351.56010 * 15 14 12 17 17 C 1.38231 * 120.00571 * 180.02562 * 16 15 14 18 18 C 1.38236 * 119.99651 * 359.95993 * 17 16 15 19 19 C 1.38232 * 119.99966 * 0.27694 * 18 17 16 20 20 C 1.38234 * 120.00131 * 359.52946 * 19 18 17 21 21 C 1.54478 * 110.96886 * 169.95024 * 14 12 11 22 22 N 1.46762 * 105.47554 * 267.25903 * 21 14 12 23 23 C 1.34423 * 111.29800 * 342.98991 * 22 21 14 24 24 O 1.21276 * 124.94104 * 180.41160 * 23 22 21 25 25 C 1.51287 * 110.11751 * 0.40220 * 23 22 21 26 26 C 1.54040 * 113.92423 * 72.34587 * 9 7 2 27 27 O 1.44176 * 85.51836 * 91.66300 * 26 9 7 28 28 C 1.44180 * 93.34212 * 24.18996 * 27 26 9 29 29 H 0.96999 * 120.00229 * 5.01861 * 1 2 3 30 30 H 1.08996 * 109.47357 * 171.21969 * 10 9 7 31 31 H 1.08991 * 109.47136 * 51.21551 * 10 9 7 32 32 H 1.08009 * 119.99839 * 0.02562 * 16 15 14 33 33 H 1.07995 * 120.00160 * 179.97438 * 17 16 15 34 34 H 1.08000 * 120.00032 * 179.97438 * 18 17 16 35 35 H 1.08000 * 120.00142 * 179.72307 * 19 18 17 36 36 H 1.07999 * 120.00494 * 180.21170 * 20 19 18 37 37 H 1.08997 * 110.24629 * 26.26319 * 21 14 12 38 38 H 1.09001 * 110.24135 * 148.17124 * 21 14 12 39 39 H 0.96996 * 124.34967 * 162.96174 * 22 21 14 40 40 H 1.09000 * 110.48244 * 257.57703 * 25 23 22 41 41 H 1.08993 * 110.48298 * 134.93645 * 25 23 22 42 42 H 1.09005 * 113.86351 * 205.80887 * 26 9 7 43 43 H 1.09002 * 113.86218 * 337.51155 * 26 9 7 44 44 H 1.08994 * 113.86719 * 221.65991 * 28 27 26 45 45 H 1.08999 * 113.86171 * 89.95539 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4612 2.0669 -1.3994 5 1 1.4646 2.6422 0.7350 6 1 3.5638 1.4303 0.6644 7 6 2.0045 -1.1940 0.0005 8 1 1.4675 -2.1276 0.0797 9 6 3.5075 -1.1963 -0.1095 10 6 4.0140 -0.5366 -1.3937 11 8 3.6615 -1.3636 -2.5340 12 6 3.9505 -0.8778 -3.7516 13 8 4.5527 0.1642 -3.8589 14 6 3.5240 -1.6321 -4.9845 15 6 4.2550 -2.9458 -5.0895 16 6 5.2953 -3.2290 -4.2244 17 6 5.9662 -4.4337 -4.3210 18 6 5.5962 -5.3557 -5.2823 19 6 4.5591 -5.0704 -6.1506 20 6 3.8856 -3.8673 -6.0514 21 6 3.7347 -0.7790 -6.2550 22 7 2.4577 -0.0922 -6.4819 23 6 1.4609 -0.6749 -5.7935 24 8 0.3035 -0.3130 -5.8067 25 6 1.9930 -1.8480 -5.0000 26 6 4.2278 -0.7135 1.1636 27 8 4.2459 -2.1040 1.5444 28 6 4.1504 -2.5655 0.1818 29 1 -0.4850 0.8368 -0.0735 30 1 5.0975 -0.4290 -1.3441 31 1 3.5558 0.4464 -1.5023 32 1 5.5840 -2.5089 -3.4729 33 1 6.7792 -4.6548 -3.6454 34 1 6.1206 -6.2968 -5.3581 35 1 4.2729 -5.7888 -6.9045 36 1 3.0731 -3.6459 -6.7275 37 1 4.5306 -0.0520 -6.0934 38 1 3.9761 -1.4193 -7.1035 39 1 2.3473 0.6828 -7.0546 40 1 1.7451 -2.7871 -5.4949 41 1 1.5953 -1.8339 -3.9853 42 1 5.2167 -0.2940 0.9786 43 1 3.6111 -0.0876 1.8087 44 1 3.4724 -3.4084 0.0482 45 1 5.1156 -2.7115 -0.3030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649232956.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:51 Heat of formation + Delta-G solvation = -109.491059 kcal Electronic energy + Delta-G solvation = -31798.097739 eV Core-core repulsion = 27553.688703 eV Total energy + Delta-G solvation = -4244.409036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.72008 -41.46732 -40.63783 -39.89592 -37.96168 -37.24754 -35.00727 -34.13357 -32.51645 -31.84178 -30.60657 -28.72863 -27.60341 -27.42445 -26.48263 -25.10352 -23.61289 -22.92939 -21.84550 -21.11615 -20.77196 -19.12489 -18.82188 -18.79602 -18.09793 -17.66913 -17.40505 -16.81449 -16.72108 -16.35740 -16.32003 -16.10065 -15.84992 -15.74689 -15.28210 -15.09749 -14.90278 -14.67607 -14.39700 -14.28135 -14.07815 -13.82368 -13.77485 -13.66137 -13.09072 -12.91172 -12.74160 -12.62275 -12.29808 -12.15368 -12.10595 -11.99884 -11.92375 -11.46722 -11.39103 -11.22509 -11.09209 -10.84250 -10.37516 -10.32146 -9.78768 -9.67434 -8.40059 -6.44827 0.35160 0.52763 0.90931 1.16882 1.18716 1.28380 1.31575 1.48910 2.17179 2.21919 2.73916 2.76251 3.02590 3.08054 3.16144 3.29823 3.40825 3.71243 3.83457 3.96005 4.10258 4.15213 4.15663 4.27945 4.33070 4.35181 4.35495 4.40238 4.48755 4.50594 4.64955 4.66202 4.74456 4.79917 4.90682 5.02336 5.17066 5.24971 5.35621 5.37877 5.52212 5.57111 5.59174 5.61816 5.66952 5.81170 6.10513 6.17389 6.53070 6.60277 7.03444 7.17805 8.74641 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010228 B = 0.005133 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.821017 B = 5453.438486 C = 7103.068466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.026 3.974 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.206 1.206 7 C -0.483 4.483 8 H 0.043 0.957 9 C -0.022 4.022 10 C 0.071 3.929 11 O -0.329 6.329 12 C 0.467 3.533 13 O -0.528 6.528 14 C -0.016 4.016 15 C -0.079 4.079 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.107 4.107 21 C 0.123 3.877 22 N -0.717 5.717 23 C 0.512 3.488 24 O -0.575 6.575 25 C -0.144 4.144 26 C 0.035 3.965 27 O -0.395 6.395 28 C 0.060 3.940 29 H 0.266 0.734 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.102 0.898 38 H 0.133 0.867 39 H 0.423 0.577 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.203 -8.759 -16.485 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.173 4.173 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.128 1.128 7 C -0.520 4.520 8 H 0.061 0.939 9 C -0.024 4.024 10 C -0.003 4.003 11 O -0.244 6.244 12 C 0.310 3.690 13 O -0.418 6.418 14 C -0.018 4.018 15 C -0.079 4.079 16 C -0.139 4.139 17 C -0.137 4.137 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.124 4.124 21 C -0.001 4.001 22 N -0.372 5.372 23 C 0.299 3.701 24 O -0.454 6.454 25 C -0.184 4.184 26 C -0.042 4.042 27 O -0.314 6.314 28 C -0.016 4.016 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.120 0.880 33 H 0.156 0.844 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.120 0.880 38 H 0.151 0.849 39 H 0.264 0.736 40 H 0.173 0.827 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.675 -8.383 -16.059 23.956 hybrid contribution -0.575 1.942 0.175 2.033 sum 15.100 -6.440 -15.884 22.843 Atomic orbital electron populations 1.69973 1.07998 1.28177 1.51240 1.25660 0.95259 1.02178 0.94198 0.86597 0.82005 0.80282 0.78016 1.21658 1.21535 1.12835 1.20537 0.88927 0.93233 1.49339 0.93883 1.21635 0.95864 0.95197 0.89656 1.23688 0.99336 0.93024 0.84220 1.86568 1.75106 1.48240 1.14463 1.23623 0.75504 0.83793 0.86070 1.90607 1.39203 1.24266 1.87720 1.20247 0.96006 0.95005 0.90551 1.18943 0.97105 0.92795 0.99093 1.21086 0.96227 0.98406 0.98218 1.21337 1.00090 0.93053 0.99190 1.21573 0.97221 0.99824 0.94514 1.21476 0.95390 0.96586 0.99599 1.21137 1.00326 0.93453 0.97527 1.22404 0.86123 0.96627 0.94917 1.46143 1.09019 1.33465 1.48607 1.21102 0.84898 0.84607 0.79517 1.90754 1.19782 1.68603 1.66299 1.22637 0.92131 1.00342 1.03257 1.24510 0.99466 0.84729 0.95474 1.89542 1.95713 1.19825 1.26342 1.23923 0.99471 0.96961 0.81284 0.92499 0.89582 0.94411 0.88014 0.84386 0.83338 0.82818 0.83560 0.87981 0.84892 0.73572 0.82684 0.88964 0.88484 0.90428 0.90317 0.88307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.95 21.44 0.30 -58.68 16 2 C 0.03 1.49 5.45 84.65 0.46 1.96 16 3 Si 0.91 43.44 23.72 68.60 1.63 45.06 16 4 H -0.29 -14.39 6.83 99.48 0.68 -13.71 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.21 -8.29 4.94 99.48 0.49 -7.79 16 7 C -0.48 -26.75 8.86 25.60 0.23 -26.53 16 8 H 0.04 2.68 8.04 -2.91 -0.02 2.66 16 9 C -0.02 -0.98 0.45 -52.22 -0.02 -1.00 16 10 C 0.07 2.88 4.36 71.98 0.31 3.19 16 11 O -0.33 -12.80 8.95 -51.45 -0.46 -13.26 16 12 C 0.47 16.05 4.99 71.24 0.36 16.41 16 13 O -0.53 -19.78 15.25 21.97 0.34 -19.44 16 14 C -0.02 -0.42 0.80 -52.62 -0.04 -0.46 16 15 C -0.08 -1.62 4.91 -19.87 -0.10 -1.72 16 16 C -0.12 -2.65 9.02 22.27 0.20 -2.45 16 17 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 18 C -0.11 -1.46 10.05 22.27 0.22 -1.24 16 19 C -0.11 -1.35 10.05 22.27 0.22 -1.13 16 20 C -0.11 -1.56 8.23 22.27 0.18 -1.38 16 21 C 0.12 2.37 6.69 86.83 0.58 2.95 16 22 N -0.72 -16.79 6.24 -459.81 -2.87 -19.66 16 23 C 0.51 16.51 8.43 87.90 0.74 17.25 16 24 O -0.57 -24.25 18.03 -3.02 -0.05 -24.30 16 25 C -0.14 -4.09 5.82 30.59 0.18 -3.91 16 26 C 0.04 1.38 6.39 72.28 0.46 1.84 16 27 O -0.39 -16.52 12.40 -148.98 -1.85 -18.37 16 28 C 0.06 2.26 8.22 72.28 0.59 2.86 16 29 H 0.27 15.98 8.32 -92.71 -0.77 15.21 16 30 H 0.09 2.90 8.00 -2.39 -0.02 2.88 16 31 H 0.04 1.72 3.88 -2.39 -0.01 1.71 16 32 H 0.10 2.56 6.25 -2.91 -0.02 2.54 16 33 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.15 1.50 7.14 -2.91 -0.02 1.47 16 37 H 0.10 2.06 6.91 -2.39 -0.02 2.04 16 38 H 0.13 1.50 7.40 -2.39 -0.02 1.48 16 39 H 0.42 8.23 8.96 -92.71 -0.83 7.40 16 40 H 0.16 3.23 6.34 -2.39 -0.02 3.21 16 41 H 0.09 3.38 7.62 -2.39 -0.02 3.36 16 42 H 0.10 3.06 8.00 -2.38 -0.02 3.04 16 43 H 0.08 3.24 6.41 -2.39 -0.02 3.22 16 44 H 0.08 3.08 8.08 -2.39 -0.02 3.06 16 45 H 0.10 2.96 8.10 -2.39 -0.02 2.94 16 Total: -1.00 -80.20 363.79 1.81 -78.38 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: -0.03 Total: 25.39 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 4.81 Total: 4.87 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.57 Total: -78.34 kcal Atomic # 8 Polarization: -73.34 SS G_CDS: -2.03 Total: -75.37 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.63 Total: 45.06 kcal Total: -80.20 1.81 -78.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649232956.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.106 kcal (2) G-P(sol) polarization free energy of solvation -80.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds