Wall clock time and date at job start Wed Apr 1 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47116 * 300.00120 * 3 2 1 6 6 H 1.48510 * 109.46862 * 59.99906 * 3 2 1 7 7 C 1.37873 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99858 * 180.52019 * 7 2 1 9 9 C 1.50697 * 120.00123 * 0.52355 * 7 2 1 10 10 C 1.53005 * 112.99772 * 300.46301 * 9 7 2 11 11 O 1.45203 * 109.46740 * 307.47962 * 10 9 7 12 12 C 1.34232 * 116.99728 * 175.32697 * 11 10 9 13 13 O 1.20829 * 120.00258 * 5.08105 * 12 11 10 14 14 C 1.50696 * 119.99882 * 185.08317 * 12 11 10 15 15 C 1.50700 * 110.85841 * 51.09410 * 14 12 11 16 16 C 1.38241 * 119.99934 * 73.15351 * 15 14 12 17 17 C 1.38229 * 119.99884 * 179.80638 * 16 15 14 18 18 C 1.38236 * 119.99997 * 0.40403 * 17 16 15 19 19 C 1.38233 * 120.00010 * 359.85035 * 18 17 16 20 20 C 1.38234 * 119.99986 * 253.42687 * 15 14 12 21 21 C 1.54487 * 110.97003 * 174.88287 * 14 12 11 22 22 N 1.46764 * 105.47079 * 92.70272 * 21 14 12 23 23 C 1.34413 * 111.30499 * 17.28311 * 22 21 14 24 24 O 1.21275 * 124.94781 * 179.30278 * 23 22 21 25 25 C 1.51290 * 110.11121 * 359.17036 * 23 22 21 26 26 C 1.54026 * 113.82000 * 72.28596 * 9 7 2 27 27 O 1.44440 * 85.42518 * 91.80871 * 26 9 7 28 28 C 1.44171 * 93.37879 * 24.09331 * 27 26 9 29 29 H 0.97003 * 120.00435 * 5.00447 * 1 2 3 30 30 H 1.08998 * 109.46829 * 187.48534 * 10 9 7 31 31 H 1.09001 * 109.47193 * 67.48035 * 10 9 7 32 32 H 1.08004 * 119.99611 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.00158 * 180.23118 * 17 16 15 34 34 H 1.08001 * 120.00142 * 179.82544 * 18 17 16 35 35 H 1.07997 * 120.00109 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00242 * 359.97438 * 20 15 14 37 37 H 1.09003 * 110.24075 * 333.70377 * 21 14 12 38 38 H 1.08998 * 110.31982 * 211.74454 * 21 14 12 39 39 H 0.97005 * 124.34394 * 197.01661 * 22 21 14 40 40 H 1.09000 * 110.64534 * 225.35422 * 25 23 22 41 41 H 1.09005 * 110.38210 * 102.80587 * 25 23 22 42 42 H 1.08998 * 113.87147 * 205.91569 * 26 9 7 43 43 H 1.09004 * 113.86221 * 337.62660 * 26 9 7 44 44 H 1.09005 * 113.86414 * 221.76861 * 28 27 26 45 45 H 1.08995 * 113.86987 * 90.06364 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0090 9 6 1.2511 -2.4991 -0.0108 10 6 0.3242 -2.6648 1.1952 11 8 1.0760 -2.4422 2.4174 12 6 0.3855 -2.4555 3.5685 13 8 -0.7895 -2.7372 3.5650 14 6 1.0757 -2.1190 4.8651 15 6 1.8277 -0.8180 4.7508 16 6 1.1369 0.3790 4.7171 17 6 1.8268 1.5725 4.6163 18 6 3.2071 1.5687 4.5407 19 6 3.8976 0.3715 4.5691 20 6 3.2079 -0.8219 4.6739 21 6 0.0659 -2.0730 6.0333 22 7 0.0762 -3.4213 6.6130 23 6 1.1656 -4.1092 6.2301 24 8 1.4280 -5.2422 6.5736 25 6 2.0154 -3.2653 5.3056 26 6 0.5794 -2.8179 -1.3597 27 8 1.8042 -3.5165 -1.6729 28 6 2.1387 -3.7274 -0.2865 29 1 -0.4851 0.8368 -0.0733 30 1 -0.0878 -3.6739 1.2008 31 1 -0.4881 -1.9408 1.1314 32 1 0.0583 0.3817 4.7731 33 1 1.2874 2.5079 4.5937 34 1 3.7461 2.5011 4.4591 35 1 4.9759 0.3685 4.5096 36 1 3.7474 -1.7572 4.6962 37 1 -0.9296 -1.8296 5.6619 38 1 0.3801 -1.3403 6.7767 39 1 -0.6127 -3.7697 7.2003 40 1 2.3380 -3.8471 4.4422 41 1 2.8779 -2.8674 5.8402 42 1 -0.2907 -3.4691 -1.2763 43 1 0.3995 -1.9405 -1.9810 44 1 3.1929 -3.5698 -0.0582 45 1 1.7459 -4.6568 0.1256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649232974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:56 Heat of formation + Delta-G solvation = -94.871559 kcal Electronic energy + Delta-G solvation = -31978.380305 eV Core-core repulsion = 27734.605218 eV Total energy + Delta-G solvation = -4243.775087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.33199 -39.55124 -38.99274 -38.75905 -36.50815 -35.56085 -33.15996 -32.85575 -30.96540 -29.96582 -29.42487 -27.65361 -25.66519 -25.43113 -24.64105 -23.45415 -22.59085 -21.94174 -20.47314 -19.53973 -19.02132 -17.75525 -17.62800 -16.74691 -16.20976 -15.93675 -15.73815 -15.39400 -15.16904 -14.92365 -14.73898 -14.55441 -14.43691 -14.33125 -14.07051 -13.68177 -13.51110 -13.14706 -13.07683 -12.76234 -12.46767 -12.25701 -12.00690 -11.91178 -11.79938 -11.62298 -11.06820 -11.01013 -10.83070 -10.79120 -10.51484 -10.23680 -9.99213 -9.93435 -9.68995 -9.47550 -9.24501 -9.09046 -8.76470 -8.71326 -8.64074 -8.40774 -6.19285 -4.23779 1.38848 1.54965 2.47989 2.59794 3.14830 3.21026 3.26514 3.29329 3.33991 3.83128 4.11563 4.19314 4.30805 4.45057 4.81474 4.88294 5.01244 5.10000 5.12650 5.15139 5.21091 5.30723 5.43280 5.49390 5.58411 5.63232 5.74147 5.90918 6.02298 6.03054 6.13015 6.14864 6.25508 6.34265 6.53568 6.55563 6.59737 6.62470 6.64904 6.86634 6.91771 7.02107 7.08524 7.20180 7.26847 7.30675 7.76867 8.12213 8.13154 8.35923 8.73895 9.41110 10.87646 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009585 B = 0.005637 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.487398 B = 4966.264762 C = 6716.843748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.479 4.479 8 H 0.065 0.935 9 C 0.035 3.965 10 C 0.081 3.919 11 O -0.315 6.315 12 C 0.472 3.528 13 O -0.513 6.513 14 C -0.023 4.023 15 C -0.068 4.068 16 C -0.100 4.100 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.096 4.096 21 C 0.120 3.880 22 N -0.724 5.724 23 C 0.523 3.477 24 O -0.533 6.533 25 C -0.147 4.147 26 C 0.047 3.953 27 O -0.388 6.388 28 C 0.027 3.973 29 H 0.263 0.737 30 H 0.033 0.967 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.413 0.587 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.342 1.982 12.644 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.130 4.130 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.517 4.517 8 H 0.083 0.917 9 C 0.034 3.966 10 C 0.008 3.992 11 O -0.229 6.229 12 C 0.314 3.686 13 O -0.403 6.403 14 C -0.025 4.025 15 C -0.068 4.068 16 C -0.118 4.118 17 C -0.131 4.131 18 C -0.133 4.133 19 C -0.133 4.133 20 C -0.114 4.114 21 C -0.004 4.004 22 N -0.380 5.380 23 C 0.309 3.691 24 O -0.410 6.410 25 C -0.187 4.187 26 C -0.030 4.030 27 O -0.307 6.307 28 C -0.050 4.050 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.252 0.748 40 H 0.135 0.865 41 H 0.143 0.857 42 H 0.067 0.933 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.206 1.390 12.498 12.767 hybrid contribution -0.324 0.948 0.057 1.004 sum 1.883 2.338 12.555 12.909 Atomic orbital electron populations 1.69836 1.05861 1.27228 1.49885 1.24866 0.94830 0.99076 0.94239 0.86513 0.80389 0.83542 0.77675 1.19559 1.21109 1.20527 1.20567 0.92809 0.88029 1.50270 0.91665 1.21096 0.91818 0.94694 0.89001 1.23547 0.96675 0.98645 0.80367 1.86512 1.41739 1.80065 1.14563 1.22636 0.85556 0.74073 0.86366 1.90616 1.17044 1.45084 1.87576 1.20099 0.95887 0.95027 0.91483 1.18977 0.93599 0.91584 1.02648 1.20910 0.99786 0.91891 0.99217 1.21046 0.94444 0.97824 0.99833 1.21164 0.94475 0.98156 0.99501 1.21074 0.99917 0.92309 1.00031 1.20998 0.93057 0.98541 0.98824 1.22127 1.00813 0.84251 0.93238 1.46104 1.25075 1.15669 1.51129 1.20743 0.81830 0.85982 0.80521 1.90753 1.73820 1.17365 1.59054 1.22597 0.98744 0.95949 1.01416 1.24001 0.86408 0.94459 0.98128 1.89530 1.38425 1.78015 1.24721 1.24127 1.00934 0.97469 0.82430 0.92695 0.94907 0.88335 0.86130 0.86118 0.86270 0.85868 0.85413 0.88231 0.89327 0.74794 0.86513 0.85708 0.93282 0.89001 0.90308 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.13 11.47 55.43 0.64 -22.50 16 2 C 0.07 1.84 5.34 -17.82 -0.10 1.74 16 3 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.48 -12.19 7.91 -34.44 -0.27 -12.46 16 8 H 0.07 1.70 7.80 -52.48 -0.41 1.29 16 9 C 0.03 0.80 0.64 -154.59 -0.10 0.71 16 10 C 0.08 1.83 4.57 37.16 0.17 2.00 16 11 O -0.32 -6.66 9.59 -39.26 -0.38 -7.03 16 12 C 0.47 8.80 6.55 36.00 0.24 9.04 16 13 O -0.51 -10.52 15.32 -18.75 -0.29 -10.81 16 14 C -0.02 -0.32 0.75 -155.18 -0.12 -0.44 16 15 C -0.07 -0.95 4.48 -104.62 -0.47 -1.41 16 16 C -0.10 -1.42 9.11 -39.58 -0.36 -1.78 16 17 C -0.11 -1.54 10.05 -39.59 -0.40 -1.94 16 18 C -0.11 -1.49 10.05 -39.58 -0.40 -1.88 16 19 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 20 C -0.10 -1.26 8.87 -39.58 -0.35 -1.61 16 21 C 0.12 1.37 6.01 -3.12 -0.02 1.35 16 22 N -0.72 -8.47 6.24 -59.20 -0.37 -8.84 16 23 C 0.52 7.44 8.43 -10.86 -0.09 7.35 16 24 O -0.53 -9.39 18.03 5.56 0.10 -9.29 16 25 C -0.15 -1.87 5.07 -26.74 -0.14 -2.00 16 26 C 0.05 1.07 8.21 37.64 0.31 1.38 16 27 O -0.39 -8.99 12.41 -35.23 -0.44 -9.43 16 28 C 0.03 0.58 8.35 37.64 0.31 0.89 16 29 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 30 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 31 H 0.10 2.48 6.53 -51.93 -0.34 2.14 16 32 H 0.12 1.60 7.84 -52.48 -0.41 1.19 16 33 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.41 6.19 -52.49 -0.32 1.09 16 37 H 0.10 1.19 7.10 -51.93 -0.37 0.82 16 38 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 39 H 0.41 4.00 8.96 -40.82 -0.37 3.63 16 40 H 0.12 1.55 7.90 -51.93 -0.41 1.14 16 41 H 0.13 1.25 6.27 -51.93 -0.33 0.92 16 42 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 43 H 0.09 2.21 8.09 -51.93 -0.42 1.79 16 44 H 0.08 1.60 8.08 -51.93 -0.42 1.18 16 45 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -31.44 377.54 -8.10 -39.53 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.86 Total: 8.43 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.17 Total: -0.91 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.27 Total: -31.34 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.00 Total: -36.57 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.44 -8.10 -39.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649232974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.339 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds