Wall clock time and date at job start Wed Apr 1 2020 02:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47116 * 300.00120 * 3 2 1 6 6 H 1.48510 * 109.46862 * 59.99906 * 3 2 1 7 7 C 1.37873 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99858 * 180.52019 * 7 2 1 9 9 C 1.50697 * 120.00123 * 0.52355 * 7 2 1 10 10 C 1.53005 * 112.99772 * 300.46301 * 9 7 2 11 11 O 1.45203 * 109.46740 * 307.47962 * 10 9 7 12 12 C 1.34232 * 116.99728 * 175.32697 * 11 10 9 13 13 O 1.20829 * 120.00258 * 5.08105 * 12 11 10 14 14 C 1.50696 * 119.99882 * 185.08317 * 12 11 10 15 15 C 1.50700 * 110.85841 * 51.09410 * 14 12 11 16 16 C 1.38241 * 119.99934 * 73.15351 * 15 14 12 17 17 C 1.38229 * 119.99884 * 179.80638 * 16 15 14 18 18 C 1.38236 * 119.99997 * 0.40403 * 17 16 15 19 19 C 1.38233 * 120.00010 * 359.85035 * 18 17 16 20 20 C 1.38234 * 119.99986 * 253.42687 * 15 14 12 21 21 C 1.54487 * 110.97003 * 174.88287 * 14 12 11 22 22 N 1.46764 * 105.47079 * 92.70272 * 21 14 12 23 23 C 1.34413 * 111.30499 * 17.28311 * 22 21 14 24 24 O 1.21275 * 124.94781 * 179.30278 * 23 22 21 25 25 C 1.51290 * 110.11121 * 359.17036 * 23 22 21 26 26 C 1.54026 * 113.82000 * 72.28596 * 9 7 2 27 27 O 1.44440 * 85.42518 * 91.80871 * 26 9 7 28 28 C 1.44171 * 93.37879 * 24.09331 * 27 26 9 29 29 H 0.97003 * 120.00435 * 5.00447 * 1 2 3 30 30 H 1.08998 * 109.46829 * 187.48534 * 10 9 7 31 31 H 1.09001 * 109.47193 * 67.48035 * 10 9 7 32 32 H 1.08004 * 119.99611 * 0.02562 * 16 15 14 33 33 H 1.08004 * 120.00158 * 180.23118 * 17 16 15 34 34 H 1.08001 * 120.00142 * 179.82544 * 18 17 16 35 35 H 1.07997 * 120.00109 * 179.97438 * 19 18 17 36 36 H 1.08001 * 120.00242 * 359.97438 * 20 15 14 37 37 H 1.09003 * 110.24075 * 333.70377 * 21 14 12 38 38 H 1.08998 * 110.31982 * 211.74454 * 21 14 12 39 39 H 0.97005 * 124.34394 * 197.01661 * 22 21 14 40 40 H 1.09000 * 110.64534 * 225.35422 * 25 23 22 41 41 H 1.09005 * 110.38210 * 102.80587 * 25 23 22 42 42 H 1.08998 * 113.87147 * 205.91569 * 26 9 7 43 43 H 1.09004 * 113.86221 * 337.62660 * 26 9 7 44 44 H 1.09005 * 113.86414 * 221.76861 * 28 27 26 45 45 H 1.08995 * 113.86987 * 90.06364 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0090 9 6 1.2511 -2.4991 -0.0108 10 6 0.3242 -2.6648 1.1952 11 8 1.0760 -2.4422 2.4174 12 6 0.3855 -2.4555 3.5685 13 8 -0.7895 -2.7372 3.5650 14 6 1.0757 -2.1190 4.8651 15 6 1.8277 -0.8180 4.7508 16 6 1.1369 0.3790 4.7171 17 6 1.8268 1.5725 4.6163 18 6 3.2071 1.5687 4.5407 19 6 3.8976 0.3715 4.5691 20 6 3.2079 -0.8219 4.6739 21 6 0.0659 -2.0730 6.0333 22 7 0.0762 -3.4213 6.6130 23 6 1.1656 -4.1092 6.2301 24 8 1.4280 -5.2422 6.5736 25 6 2.0154 -3.2653 5.3056 26 6 0.5794 -2.8179 -1.3597 27 8 1.8042 -3.5165 -1.6729 28 6 2.1387 -3.7274 -0.2865 29 1 -0.4851 0.8368 -0.0733 30 1 -0.0878 -3.6739 1.2008 31 1 -0.4881 -1.9408 1.1314 32 1 0.0583 0.3817 4.7731 33 1 1.2874 2.5079 4.5937 34 1 3.7461 2.5011 4.4591 35 1 4.9759 0.3685 4.5096 36 1 3.7474 -1.7572 4.6962 37 1 -0.9296 -1.8296 5.6619 38 1 0.3801 -1.3403 6.7767 39 1 -0.6127 -3.7697 7.2003 40 1 2.3380 -3.8471 4.4422 41 1 2.8779 -2.8674 5.8402 42 1 -0.2907 -3.4691 -1.2763 43 1 0.3995 -1.9405 -1.9810 44 1 3.1929 -3.5698 -0.0582 45 1 1.7459 -4.6568 0.1256 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649232974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:55 Heat of formation + Delta-G solvation = -114.649550 kcal Electronic energy + Delta-G solvation = -31979.237943 eV Core-core repulsion = 27734.605218 eV Total energy + Delta-G solvation = -4244.632725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53245 -41.20554 -40.43829 -39.87381 -37.79522 -37.04361 -34.88493 -34.09704 -31.94883 -31.76986 -30.45364 -28.70735 -27.43874 -27.18068 -26.32495 -24.76742 -23.59946 -23.14938 -21.51526 -20.98594 -20.68764 -18.97077 -18.75132 -18.45174 -17.70566 -17.36393 -17.10797 -16.74355 -16.58911 -16.38798 -16.20119 -16.11483 -15.83344 -15.77073 -15.39669 -14.77560 -14.57270 -14.40822 -14.21643 -14.05226 -13.90338 -13.65190 -13.60009 -13.41758 -13.00349 -12.84990 -12.81303 -12.61879 -12.33882 -12.10743 -11.88043 -11.74787 -11.70097 -11.34590 -11.27962 -11.13725 -10.89576 -10.59099 -10.27599 -10.24128 -9.75733 -9.67256 -8.12768 -6.22340 0.35586 0.55244 1.13697 1.40260 1.40830 1.44907 1.53889 1.77172 2.27758 2.43803 2.80627 3.00565 3.06914 3.11562 3.23979 3.39350 3.62797 3.84937 4.09041 4.14073 4.17325 4.29587 4.30027 4.39547 4.44828 4.48974 4.49910 4.52567 4.58379 4.60864 4.67487 4.77216 4.80937 5.04880 5.13179 5.16869 5.18648 5.44093 5.50126 5.57161 5.59529 5.63843 5.66337 5.67931 5.78373 5.87712 6.12022 6.24754 6.74359 6.81183 7.09448 7.44454 8.92628 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009585 B = 0.005637 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.487398 B = 4966.264762 C = 6716.843748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.038 3.962 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.055 0.945 9 C 0.021 3.979 10 C 0.092 3.908 11 O -0.325 6.325 12 C 0.466 3.534 13 O -0.537 6.537 14 C -0.016 4.016 15 C -0.079 4.079 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.121 4.121 20 C -0.104 4.104 21 C 0.125 3.875 22 N -0.713 5.713 23 C 0.519 3.481 24 O -0.572 6.572 25 C -0.141 4.141 26 C 0.050 3.950 27 O -0.402 6.402 28 C 0.036 3.964 29 H 0.262 0.738 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.423 0.577 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 2.551 13.862 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.163 4.163 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.021 3.979 10 C 0.018 3.982 11 O -0.239 6.239 12 C 0.309 3.691 13 O -0.428 6.428 14 C -0.018 4.018 15 C -0.079 4.079 16 C -0.135 4.135 17 C -0.147 4.147 18 C -0.141 4.141 19 C -0.139 4.139 20 C -0.122 4.122 21 C 0.001 3.999 22 N -0.368 5.368 23 C 0.306 3.694 24 O -0.452 6.452 25 C -0.181 4.181 26 C -0.027 4.027 27 O -0.322 6.322 28 C -0.041 4.041 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.264 0.736 40 H 0.129 0.871 41 H 0.174 0.826 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.454 1.977 13.732 14.297 hybrid contribution -0.742 0.800 -0.333 1.141 sum 2.712 2.777 13.399 13.950 Atomic orbital electron populations 1.69937 1.06714 1.27559 1.50460 1.25396 0.95402 1.01353 0.94101 0.85812 0.79497 0.80754 0.77687 1.19303 1.21386 1.19689 1.20703 0.92457 0.89287 1.50315 0.92671 1.21145 0.92485 0.94929 0.89390 1.23202 0.95720 0.98022 0.81219 1.86508 1.41991 1.80525 1.14915 1.23581 0.85574 0.72944 0.86981 1.90597 1.18202 1.46073 1.87946 1.20097 0.96583 0.95663 0.89413 1.19017 0.94137 0.91157 1.03620 1.21067 1.00053 0.92444 0.99899 1.21309 0.95160 0.98156 1.00049 1.21516 0.94409 0.99363 0.98827 1.21441 1.01307 0.91971 0.99155 1.21303 0.92824 0.99721 0.98307 1.22235 1.00014 0.84568 0.93090 1.46090 1.24607 1.15620 1.50497 1.20957 0.82376 0.85580 0.80482 1.90735 1.74860 1.18962 1.60663 1.22639 0.99213 0.95062 1.01173 1.23941 0.87044 0.94233 0.97462 1.89504 1.38626 1.78075 1.25959 1.24211 1.01134 0.97524 0.81207 0.92887 0.94124 0.91337 0.86152 0.85026 0.84257 0.83437 0.83598 0.88763 0.85973 0.73629 0.87101 0.82624 0.91326 0.91024 0.89603 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.61 11.47 21.44 0.25 -47.37 16 2 C 0.04 1.92 5.34 84.65 0.45 2.37 16 3 Si 0.94 40.84 29.54 68.60 2.03 42.87 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.49 -24.84 7.91 25.60 0.20 -24.64 16 8 H 0.06 2.85 7.80 -2.91 -0.02 2.82 16 9 C 0.02 0.98 0.64 -52.23 -0.03 0.94 16 10 C 0.09 4.18 4.57 71.98 0.33 4.51 16 11 O -0.33 -13.63 9.59 -51.44 -0.49 -14.12 16 12 C 0.47 17.15 6.55 71.23 0.47 17.62 16 13 O -0.54 -22.06 15.32 21.96 0.34 -21.72 16 14 C -0.02 -0.42 0.75 -52.61 -0.04 -0.46 16 15 C -0.08 -2.06 4.48 -19.86 -0.09 -2.15 16 16 C -0.12 -3.15 9.11 22.27 0.20 -2.95 16 17 C -0.13 -3.28 10.05 22.27 0.22 -3.06 16 18 C -0.12 -2.88 10.05 22.27 0.22 -2.66 16 19 C -0.12 -2.70 10.05 22.27 0.22 -2.48 16 20 C -0.10 -2.45 8.87 22.27 0.20 -2.25 16 21 C 0.13 2.61 6.01 86.83 0.52 3.14 16 22 N -0.71 -15.50 6.24 -459.80 -2.87 -18.37 16 23 C 0.52 14.05 8.43 87.90 0.74 14.79 16 24 O -0.57 -19.74 18.03 -3.01 -0.05 -19.79 16 25 C -0.14 -3.31 5.07 30.59 0.15 -3.16 16 26 C 0.05 2.28 8.21 72.29 0.59 2.88 16 27 O -0.40 -18.31 12.41 -148.98 -1.85 -20.16 16 28 C 0.04 1.46 8.35 72.29 0.60 2.06 16 29 H 0.26 13.29 8.32 -92.71 -0.77 12.52 16 30 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 31 H 0.07 3.51 6.53 -2.39 -0.02 3.50 16 32 H 0.12 3.12 7.84 -2.91 -0.02 3.10 16 33 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 34 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.15 2.79 6.19 -2.91 -0.02 2.77 16 37 H 0.09 2.14 7.10 -2.39 -0.02 2.12 16 38 H 0.12 1.82 7.79 -2.39 -0.02 1.80 16 39 H 0.42 7.53 8.96 -92.70 -0.83 6.70 16 40 H 0.11 2.78 7.90 -2.39 -0.02 2.77 16 41 H 0.16 2.65 6.27 -2.38 -0.01 2.63 16 42 H 0.07 2.81 8.10 -2.39 -0.02 2.79 16 43 H 0.07 3.51 8.09 -2.38 -0.02 3.49 16 44 H 0.09 3.37 8.08 -2.38 -0.02 3.35 16 45 H 0.08 2.81 8.02 -2.39 -0.02 2.79 16 Total: -1.00 -67.31 377.54 2.52 -64.78 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.20 Total: 29.37 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 4.98 Total: 4.51 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -2.62 Total: -65.74 kcal Atomic # 8 Polarization: -73.74 SS G_CDS: -2.06 Total: -75.80 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -67.31 2.52 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649232974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.867 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds