Wall clock time and date at job start Wed Apr 1 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48497 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46782 * 299.99615 * 3 2 1 6 6 H 1.48493 * 109.46984 * 59.99571 * 3 2 1 7 7 C 1.37880 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46494 * 119.99858 * 175.19660 * 16 14 13 18 18 C 1.50701 * 109.47331 * 180.02562 * 17 16 14 19 19 N 1.31131 * 126.55293 * 89.99688 * 18 17 16 20 20 C 1.34495 * 105.61529 * 180.02562 * 19 18 17 21 21 C 1.50699 * 126.29140 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47366 * 210.00205 * 21 20 19 23 23 F 1.39907 * 109.46871 * 329.99562 * 21 20 19 24 24 N 1.29955 * 107.42578 * 359.97438 * 20 19 18 25 25 O 1.21302 * 110.24662 * 359.71102 * 24 20 19 26 26 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 27 27 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 28 28 H 0.96994 * 120.00045 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46455 * 59.99990 * 9 7 2 30 30 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 31 31 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 32 32 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 33 33 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 34 34 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 35 35 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 36 36 H 1.09000 * 109.47197 * 299.99777 * 17 16 14 37 37 H 1.09003 * 109.47844 * 60.00002 * 17 16 14 38 38 H 1.08997 * 109.47262 * 89.99222 * 21 20 19 39 39 H 1.09002 * 109.63018 * 68.24833 * 26 13 12 40 40 H 1.09001 * 109.63196 * 188.83157 * 26 13 12 41 41 H 1.08993 * 109.49068 * 292.70728 * 27 10 9 42 42 H 1.09000 * 109.49095 * 52.78808 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5215 -4.8934 0.2407 12 6 2.5643 -6.0030 0.4133 13 7 3.4612 -5.9866 -0.7522 14 6 3.7111 -7.1129 -1.4488 15 8 4.5241 -7.1010 -2.3527 16 7 3.0637 -8.2539 -1.1397 17 6 3.2559 -9.4509 -1.9621 18 6 2.4256 -10.5799 -1.4079 19 7 1.1897 -10.8733 -1.7334 20 6 0.8651 -11.9470 -0.9914 21 6 -0.4572 -12.6700 -0.9993 22 9 -0.6925 -13.2256 0.2629 23 9 -1.4802 -11.7674 -1.3094 24 7 1.9011 -12.2467 -0.2663 25 8 2.8103 -11.4771 -0.4950 26 6 4.0831 -4.7095 -1.1337 27 6 2.9760 -3.6497 -1.2489 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 0.8793 -5.1267 -0.6086 32 1 0.9170 -4.8186 1.1446 33 1 2.0637 -6.9692 0.4765 34 1 3.1405 -5.8258 1.3214 35 1 2.4705 -8.2825 -0.3728 36 1 2.9465 -9.2417 -2.9861 37 1 4.3084 -9.7342 -1.9513 38 1 -0.4333 -13.4629 -1.7467 39 1 4.8025 -4.4103 -0.3714 40 1 4.5873 -4.8200 -2.0938 41 1 2.3135 -3.9002 -2.0774 42 1 3.4263 -2.6728 -1.4254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650548909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:56 Heat of formation + Delta-G solvation = -26.999450 kcal Electronic energy + Delta-G solvation = -29727.184938 eV Core-core repulsion = 24996.708979 eV Total energy + Delta-G solvation = -4730.475959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.72987 -47.74647 -46.47844 -40.44700 -37.87197 -36.82577 -35.66785 -34.52968 -33.19030 -32.39642 -30.80770 -28.91161 -28.55638 -27.48077 -25.47273 -24.39807 -23.31396 -22.54597 -22.20640 -20.92334 -19.79341 -19.12072 -18.89953 -18.19383 -17.97242 -17.67460 -17.12283 -16.62691 -16.30052 -15.90379 -15.43931 -14.73975 -14.63806 -14.52109 -14.43065 -14.33986 -14.05655 -13.94576 -13.83192 -13.67215 -13.53763 -13.22524 -12.71265 -12.70096 -12.31333 -12.22625 -12.04460 -11.90941 -11.34967 -11.22492 -11.02529 -10.89171 -10.78459 -10.64391 -10.57605 -10.18862 -9.90913 -9.58154 -9.29348 -8.53980 -8.45835 -7.37868 -6.08603 -4.10550 0.19522 1.16578 1.86224 2.15143 2.56989 2.89688 3.07203 3.25159 3.28103 3.35927 3.40188 3.67898 3.76686 4.02954 4.30652 4.36818 4.52947 4.69689 4.77789 4.97055 5.07204 5.11244 5.24293 5.29563 5.35528 5.56485 5.74417 5.81772 5.92698 5.97158 6.13962 6.31837 6.48564 6.53887 6.82286 7.17882 7.22874 7.24552 7.70191 7.74731 7.97161 8.08016 8.40601 8.43788 8.97063 9.54321 11.02280 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002075 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.237566 B =13489.396546 C =14673.557739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.118 3.882 13 N -0.620 5.620 14 C 0.716 3.284 15 O -0.589 6.589 16 N -0.751 5.751 17 C 0.237 3.763 18 C 0.178 3.822 19 N -0.435 5.435 20 C 0.088 3.912 21 C 0.378 3.622 22 F -0.180 7.180 23 F -0.173 7.173 24 N -0.337 5.337 25 O 0.109 5.891 26 C 0.133 3.867 27 C 0.050 3.950 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.031 0.969 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.148 0.852 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.026 0.974 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -26.325 -2.483 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.006 4.006 13 N -0.356 5.356 14 C 0.417 3.583 15 O -0.467 6.467 16 N -0.413 5.413 17 C 0.111 3.889 18 C -0.043 4.043 19 N -0.168 5.168 20 C -0.186 4.186 21 C 0.323 3.677 22 F -0.161 7.161 23 F -0.154 7.154 24 N -0.037 5.037 25 O 0.041 5.959 26 C 0.011 3.989 27 C -0.080 4.080 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.238 0.762 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.579 -26.750 -2.405 27.095 hybrid contribution -0.713 0.903 -0.067 1.153 sum 2.867 -25.846 -2.472 26.122 Atomic orbital electron populations 1.69964 1.06109 1.26793 1.50860 1.25001 0.94869 0.99415 0.95334 0.86433 0.80086 0.83334 0.77528 1.19577 1.21098 1.21020 1.21172 0.93546 0.89807 1.50247 0.91675 1.19731 0.89984 0.87197 0.96208 1.62085 1.27961 1.02415 1.33544 1.22383 0.94678 0.90908 1.01015 1.21808 0.91945 0.98199 0.88651 1.47410 1.49312 1.07777 1.31107 1.15581 0.80831 0.79779 0.82073 1.90925 1.37522 1.84430 1.33804 1.45072 1.52193 1.09768 1.34264 1.19469 0.97845 0.76876 0.94741 1.28910 0.90782 0.95058 0.89554 1.71933 1.10459 1.11274 1.23120 1.26487 0.99410 0.96607 0.96091 1.19202 0.77740 0.86903 0.83866 1.93095 1.94488 1.85227 1.43292 1.93117 1.59724 1.69766 1.92794 1.74728 0.97343 1.12792 1.18849 1.85397 1.34367 1.30542 1.45569 1.21905 0.95431 0.80126 1.01461 1.22469 0.95187 0.99243 0.91063 0.92907 0.99072 0.95061 0.95402 0.90035 0.91510 0.90259 0.76233 0.86364 0.86968 0.83545 0.90851 0.89131 0.95605 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.71 8.41 -34.44 -0.29 -13.99 16 8 H 0.07 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 4.81 4.72 -4.98 -0.02 4.78 16 10 N -0.53 -10.66 4.62 -235.47 -1.09 -11.75 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 C 0.12 1.45 6.59 -3.60 -0.02 1.43 16 13 N -0.62 -8.57 3.00 -177.91 -0.53 -9.10 16 14 C 0.72 9.53 8.31 -86.92 -0.72 8.81 16 15 O -0.59 -9.51 15.83 5.29 0.08 -9.42 16 16 N -0.75 -7.16 5.46 -66.42 -0.36 -7.52 16 17 C 0.24 1.71 6.30 -5.20 -0.03 1.68 16 18 C 0.18 1.38 7.88 -13.05 -0.10 1.27 16 19 N -0.43 -4.06 11.51 -9.86 -0.11 -4.18 16 20 C 0.09 0.78 7.71 -156.37 -1.21 -0.43 16 21 C 0.38 2.55 5.86 36.01 0.21 2.76 16 22 F -0.18 -1.50 17.28 2.25 0.04 -1.46 16 23 F -0.17 -1.53 17.29 2.25 0.04 -1.50 16 24 N -0.34 -3.14 12.10 30.90 0.37 -2.77 16 25 O 0.11 0.89 11.31 18.09 0.20 1.10 16 26 C 0.13 2.03 6.61 -3.36 -0.02 2.00 16 27 C 0.05 0.90 5.47 -3.46 -0.02 0.89 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 33 H 0.07 0.63 5.64 -51.93 -0.29 0.33 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.36 5.96 -40.82 -0.24 3.11 16 36 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.15 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.37 7.09 -51.93 -0.37 1.00 16 41 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 1.93 6.67 -51.93 -0.35 1.59 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -33.28 363.36 -7.48 -40.76 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -4.97 Total: -1.60 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: -2.35 Total: 11.25 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.99 Total: -60.68 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.29 Total: -8.33 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.28 -7.48 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650548909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.762 kcal (2) G-P(sol) polarization free energy of solvation -33.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds