Wall clock time and date at job start Wed Apr 1 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99788 * 2 1 4 4 H 1.48497 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46782 * 299.99615 * 3 2 1 6 6 H 1.48493 * 109.46984 * 59.99571 * 3 2 1 7 7 C 1.37880 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00192 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99742 * 170.00193 * 10 9 7 12 12 C 1.53244 * 109.33717 * 187.25979 * 11 10 9 13 13 N 1.47078 * 108.52025 * 306.16597 * 12 11 10 14 14 C 1.34774 * 120.88580 * 231.19079 * 13 12 11 15 15 O 1.21581 * 120.00222 * 184.98784 * 14 13 12 16 16 N 1.34780 * 119.99633 * 4.71390 * 14 13 12 17 17 C 1.46494 * 119.99858 * 175.19660 * 16 14 13 18 18 C 1.50701 * 109.47331 * 180.02562 * 17 16 14 19 19 N 1.31131 * 126.55293 * 89.99688 * 18 17 16 20 20 C 1.34495 * 105.61529 * 180.02562 * 19 18 17 21 21 C 1.50699 * 126.29140 * 179.97438 * 20 19 18 22 22 F 1.39898 * 109.47366 * 210.00205 * 21 20 19 23 23 F 1.39907 * 109.46871 * 329.99562 * 21 20 19 24 24 N 1.29955 * 107.42578 * 359.97438 * 20 19 18 25 25 O 1.21302 * 110.24662 * 359.71102 * 24 20 19 26 26 C 1.47081 * 118.23549 * 51.46114 * 13 12 11 27 27 C 1.46897 * 111.00511 * 294.30409 * 10 9 7 28 28 H 0.96994 * 120.00045 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46455 * 59.99990 * 9 7 2 30 30 H 1.08998 * 109.47143 * 300.00526 * 9 7 2 31 31 H 1.08997 * 109.49477 * 67.29646 * 11 10 9 32 32 H 1.08997 * 109.49313 * 307.21133 * 11 10 9 33 33 H 1.09003 * 109.62633 * 186.46131 * 12 11 10 34 34 H 1.08993 * 109.62882 * 65.87882 * 12 11 10 35 35 H 0.96993 * 120.00011 * 355.19747 * 16 14 13 36 36 H 1.09000 * 109.47197 * 299.99777 * 17 16 14 37 37 H 1.09003 * 109.47844 * 60.00002 * 17 16 14 38 38 H 1.08997 * 109.47262 * 89.99222 * 21 20 19 39 39 H 1.09002 * 109.63018 * 68.24833 * 26 13 12 40 40 H 1.09001 * 109.63196 * 188.83157 * 26 13 12 41 41 H 1.08993 * 109.49068 * 292.70728 * 27 10 9 42 42 H 1.09000 * 109.49095 * 52.78808 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2058 -3.6157 0.0015 11 6 1.5215 -4.8934 0.2407 12 6 2.5643 -6.0030 0.4133 13 7 3.4612 -5.9866 -0.7522 14 6 3.7111 -7.1129 -1.4488 15 8 4.5241 -7.1010 -2.3527 16 7 3.0637 -8.2539 -1.1397 17 6 3.2559 -9.4509 -1.9621 18 6 2.4256 -10.5799 -1.4079 19 7 1.1897 -10.8733 -1.7334 20 6 0.8651 -11.9470 -0.9914 21 6 -0.4572 -12.6700 -0.9993 22 9 -0.6925 -13.2256 0.2629 23 9 -1.4802 -11.7674 -1.3094 24 7 1.9011 -12.2467 -0.2663 25 8 2.8103 -11.4771 -0.4950 26 6 4.0831 -4.7095 -1.1337 27 6 2.9760 -3.6497 -1.2489 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8880 30 1 0.6248 -2.5563 0.8919 31 1 0.8793 -5.1267 -0.6086 32 1 0.9170 -4.8186 1.1446 33 1 2.0637 -6.9692 0.4765 34 1 3.1405 -5.8258 1.3214 35 1 2.4705 -8.2825 -0.3728 36 1 2.9465 -9.2417 -2.9861 37 1 4.3084 -9.7342 -1.9513 38 1 -0.4333 -13.4629 -1.7467 39 1 4.8025 -4.4103 -0.3714 40 1 4.5873 -4.8200 -2.0938 41 1 2.3135 -3.9002 -2.0774 42 1 3.4263 -2.6728 -1.4254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650548909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:55 Heat of formation + Delta-G solvation = -53.021588 kcal Electronic energy + Delta-G solvation = -29728.313343 eV Core-core repulsion = 24996.708979 eV Total energy + Delta-G solvation = -4731.604363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.30501 -48.33731 -47.12896 -41.52401 -39.20324 -37.50872 -36.50232 -36.00514 -34.44515 -33.85696 -32.05618 -30.24477 -29.19718 -28.61996 -27.05441 -25.09133 -24.56363 -23.95897 -23.14240 -22.25089 -20.82261 -19.77741 -19.74244 -19.10671 -18.53918 -18.47761 -18.30232 -17.75540 -17.47482 -16.85023 -16.80782 -16.23727 -15.99033 -15.52511 -15.36015 -15.27890 -15.14239 -15.11496 -14.76346 -14.65527 -14.43945 -14.16484 -13.98914 -13.66617 -13.49650 -13.33109 -13.08512 -12.79480 -12.73467 -12.59717 -12.56523 -12.36524 -12.31135 -12.14459 -11.77188 -11.67226 -11.36636 -11.18412 -10.62022 -10.46257 -9.67037 -9.04177 -8.20310 -6.29999 -0.43712 0.51034 1.20756 1.42841 1.43892 1.56949 1.57859 1.69829 2.01912 2.29248 2.41383 2.75033 2.81809 3.12409 3.17790 3.24156 3.59071 3.75562 3.91122 3.93904 4.05774 4.13008 4.19916 4.26965 4.42605 4.44683 4.47369 4.58199 4.71750 4.85803 4.97299 5.02891 5.10776 5.18182 5.22436 5.39627 5.64560 5.78231 6.03984 6.25856 6.58110 6.60846 6.76022 6.86398 7.37438 7.40069 8.91085 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002075 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.237566 B =13489.396546 C =14673.557739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.068 0.932 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.036 3.964 12 C 0.128 3.872 13 N -0.626 5.626 14 C 0.718 3.282 15 O -0.617 6.617 16 N -0.739 5.739 17 C 0.238 3.762 18 C 0.191 3.809 19 N -0.455 5.455 20 C 0.083 3.917 21 C 0.374 3.626 22 F -0.191 7.191 23 F -0.187 7.187 24 N -0.352 5.352 25 O 0.114 5.886 26 C 0.147 3.853 27 C 0.054 3.946 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.009 0.991 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.408 0.592 36 H 0.122 0.878 37 H 0.133 0.867 38 H 0.195 0.805 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.011 0.989 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -27.662 -2.289 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.086 0.914 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.093 4.093 12 C 0.005 3.995 13 N -0.362 5.362 14 C 0.420 3.580 15 O -0.497 6.497 16 N -0.400 5.400 17 C 0.113 3.887 18 C -0.030 4.030 19 N -0.188 5.188 20 C -0.191 4.191 21 C 0.320 3.680 22 F -0.172 7.172 23 F -0.168 7.168 24 N -0.052 5.052 25 O 0.046 5.954 26 C 0.024 3.976 27 C -0.075 4.075 28 H 0.072 0.928 29 H -0.025 1.025 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.246 0.754 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.211 0.789 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.029 0.971 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.902 -28.140 -2.195 28.648 hybrid contribution -1.157 1.246 -0.142 1.706 sum 3.745 -26.894 -2.337 27.254 Atomic orbital electron populations 1.70090 1.07787 1.27819 1.51969 1.25916 0.95699 1.03248 0.94892 0.85339 0.79168 0.78628 0.77527 1.18392 1.20740 1.20582 1.21504 0.93803 0.90863 1.49701 0.91420 1.19370 0.90041 0.88904 0.93462 1.62002 1.27020 1.02896 1.34337 1.22519 0.95822 0.90194 1.00750 1.21821 0.90944 0.98278 0.88482 1.47391 1.49570 1.07586 1.31640 1.15592 0.80724 0.80241 0.81478 1.90912 1.38876 1.84976 1.34932 1.44928 1.51280 1.09373 1.34446 1.19635 0.98962 0.75759 0.94325 1.28875 0.90318 0.94784 0.89001 1.71945 1.11205 1.11823 1.23841 1.26865 1.00046 0.96510 0.95680 1.19814 0.76398 0.87461 0.84366 1.93069 1.94468 1.85274 1.44366 1.93083 1.60333 1.70563 1.92859 1.74725 0.97751 1.13419 1.19333 1.85387 1.34090 1.30450 1.45482 1.21645 0.94049 0.79913 1.02033 1.22413 0.95541 0.99735 0.89818 0.92757 1.02452 0.97330 0.96361 0.89614 0.87910 0.89090 0.75398 0.85974 0.84926 0.78887 0.89980 0.88884 0.97077 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.65 13.29 21.45 0.28 -55.37 16 2 C 0.00 0.02 5.46 84.65 0.46 0.48 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.52 -28.53 8.41 25.60 0.22 -28.31 16 8 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 9 C 0.21 10.73 4.72 85.56 0.40 11.14 16 10 N -0.54 -21.66 4.62 -898.90 -4.15 -25.82 16 11 C 0.04 1.15 5.62 86.38 0.49 1.63 16 12 C 0.13 2.86 6.59 86.35 0.57 3.43 16 13 N -0.63 -16.10 3.00 -835.04 -2.51 -18.60 16 14 C 0.72 17.53 8.31 179.05 1.49 19.02 16 15 O -0.62 -18.77 15.83 -3.97 -0.06 -18.84 16 16 N -0.74 -12.12 5.46 -482.31 -2.63 -14.75 16 17 C 0.24 2.85 6.30 85.63 0.54 3.39 16 18 C 0.19 2.54 7.88 88.38 0.70 3.24 16 19 N -0.45 -7.70 11.51 -303.17 -3.49 -11.19 16 20 C 0.08 1.33 7.71 138.46 1.07 2.40 16 21 C 0.37 4.41 5.86 71.24 0.42 4.82 16 22 F -0.19 -2.94 17.28 44.97 0.78 -2.16 16 23 F -0.19 -3.11 17.29 44.97 0.78 -2.33 16 24 N -0.35 -5.98 12.10 -60.29 -0.73 -6.71 16 25 O 0.11 1.63 11.31 74.80 0.85 2.47 16 26 C 0.15 4.31 6.61 86.50 0.57 4.88 16 27 C 0.05 2.00 5.47 86.54 0.47 2.47 16 28 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 29 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 30 H 0.01 0.48 7.97 -2.39 -0.02 0.46 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 2.62 7.99 -2.39 -0.02 2.60 16 33 H 0.10 1.58 5.64 -2.39 -0.01 1.56 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.41 5.56 5.96 -92.71 -0.55 5.00 16 36 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.19 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.09 2.72 7.09 -2.39 -0.02 2.70 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 42 H 0.08 3.25 6.67 -2.39 -0.02 3.24 16 Total: -1.00 -73.18 363.36 -0.94 -74.12 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.54 Total: 5.11 kcal Atomic # 6 Polarization: 21.19 SS G_CDS: 7.39 Total: 28.58 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -13.23 Total: -132.43 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.78 Total: -16.37 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 1.55 Total: -4.49 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.18 -0.94 -74.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650548909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.097 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds