Wall clock time and date at job start Wed Apr 1 2020 03:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86803 * 119.99923 * 2 1 4 4 H 1.48493 * 109.47015 * 239.99989 * 3 2 1 5 5 H 1.48500 * 109.46906 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46984 * 120.00102 * 3 2 1 7 7 C 1.38653 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00175 * 180.02562 * 7 2 1 9 9 O 1.34839 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.35747 * 116.99594 * 185.05488 * 9 7 2 11 11 C 1.38896 * 120.07368 * 354.47084 * 10 9 7 12 12 C 1.38074 * 119.93337 * 179.97438 * 11 10 9 13 13 C 1.38332 * 120.07046 * 359.97438 * 12 11 10 14 14 C 1.38279 * 120.13226 * 0.02562 * 13 12 11 15 15 C 1.50709 * 119.96331 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46869 * 89.99378 * 15 14 13 17 17 O 1.20822 * 120.00250 * 0.02562 * 16 15 14 18 18 O 1.34224 * 119.99653 * 179.97438 * 16 15 14 19 19 C 1.45201 * 117.00207 * 180.02562 * 18 16 15 20 20 H 1.09008 * 110.53914 * 328.84658 * 19 18 16 21 21 C 1.54627 * 110.48979 * 206.23518 * 19 18 16 22 22 C 1.54668 * 101.68321 * 216.30715 * 21 19 18 23 23 N 1.46766 * 105.37920 * 25.76842 * 22 21 19 24 24 C 1.46501 * 124.34741 * 162.85872 * 23 22 21 25 25 C 1.53003 * 117.50063 * 171.10066 * 24 23 22 26 26 C 1.53003 * 117.49399 * 239.72258 * 24 23 22 27 27 C 1.34420 * 111.30220 * 342.58217 * 23 22 21 28 28 O 1.21278 * 124.93946 * 180.65487 * 27 23 22 29 29 C 1.38122 * 120.07528 * 0.27011 * 14 13 12 30 30 H 0.97005 * 119.99632 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.03442 * 359.97236 * 11 10 9 32 32 H 1.08001 * 119.96966 * 179.97438 * 12 11 10 33 33 H 1.07994 * 119.92913 * 180.02562 * 13 12 11 34 34 H 1.09004 * 109.46607 * 329.99610 * 15 14 13 35 35 H 1.08992 * 109.47056 * 209.99736 * 15 14 13 36 36 H 1.09003 * 110.96883 * 334.63994 * 21 19 18 37 37 H 1.09001 * 110.97200 * 98.36971 * 21 19 18 38 38 H 1.08997 * 110.39885 * 266.73842 * 22 21 19 39 39 H 1.09006 * 110.17812 * 144.67620 * 22 21 19 40 40 H 1.08998 * 115.56272 * 25.40541 * 24 23 22 41 41 H 1.08998 * 117.49372 * 214.97707 * 25 24 23 42 42 H 1.09000 * 117.49433 * 359.97438 * 25 24 23 43 43 H 1.08998 * 117.50135 * 359.97438 * 26 24 23 44 44 H 1.09003 * 117.49746 * 145.02381 * 26 24 23 45 45 H 1.07998 * 120.03866 * 179.70878 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2124 5 1 1.2845 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3347 -2.3685 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4574 -3.4395 0.0921 12 6 4.2025 -4.5968 0.2007 13 6 3.5687 -5.8203 0.3232 14 6 2.1877 -5.8884 0.3369 15 6 1.5012 -7.2233 0.4712 16 6 1.2797 -7.5297 1.9300 17 8 1.6416 -6.7445 2.7739 18 8 0.6793 -8.6744 2.2916 19 6 0.4984 -8.9031 3.7140 20 1 1.3038 -8.4371 4.2818 21 6 0.4311 -10.4185 4.0143 22 6 -0.6149 -10.4661 5.1526 23 7 -1.4491 -9.2732 4.9649 24 6 -2.7686 -9.0834 5.5724 25 6 -3.4128 -7.7014 5.4450 26 6 -3.9567 -8.8770 4.6307 27 6 -0.8443 -8.3748 4.1687 28 8 -1.3078 -7.2976 3.8595 29 6 1.4367 -4.7348 0.2225 30 1 -0.4850 0.8401 0.0004 31 1 3.9529 -2.4845 -0.0032 32 1 5.2813 -4.5469 0.1899 33 1 4.1538 -6.7240 0.4084 34 1 2.1254 -7.9990 0.0277 35 1 0.5409 -7.1913 -0.0433 36 1 0.0890 -10.9743 3.1413 37 1 1.3960 -10.7913 4.3581 38 1 -0.1212 -10.4321 6.1238 39 1 -1.2216 -11.3677 5.0683 40 1 -2.9468 -9.6388 6.4932 41 1 -4.0147 -7.3477 6.2821 42 1 -2.8546 -6.9334 4.9096 43 1 -3.7565 -8.8821 3.5592 44 1 -4.9165 -9.2966 4.9320 45 1 0.3581 -4.7892 0.2285 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771635129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:11 Heat of formation + Delta-G solvation = -99.458569 kcal Electronic energy + Delta-G solvation = -29470.145902 eV Core-core repulsion = 25226.171908 eV Total energy + Delta-G solvation = -4243.973994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30789 -41.23555 -40.62293 -38.55060 -37.84471 -37.76798 -36.70972 -34.38977 -33.66640 -31.63347 -30.95719 -29.14209 -28.14888 -27.28933 -24.45278 -23.60358 -23.42704 -23.20170 -22.80517 -21.92078 -20.40585 -19.55576 -19.04389 -18.85411 -18.36344 -17.66542 -17.11123 -16.88683 -16.73815 -16.63607 -16.23154 -16.14706 -15.54878 -15.44216 -15.04081 -14.95955 -14.80903 -14.55070 -14.43122 -14.14375 -13.99908 -13.64653 -13.40708 -13.18986 -13.12535 -12.98709 -12.79535 -12.54999 -12.44583 -12.39701 -12.34809 -12.27204 -12.15603 -11.83695 -11.63167 -11.44770 -11.24938 -10.82724 -10.57805 -9.74113 -9.64717 -9.03381 -8.49368 -6.18938 0.36328 0.70176 0.97898 1.16413 1.31287 1.43527 1.49032 1.62811 1.90771 2.15863 2.77884 2.80783 3.08236 3.12291 3.33149 3.36236 3.56407 3.72722 3.83309 3.89153 3.90972 3.97784 4.04844 4.08322 4.25094 4.33938 4.38008 4.50932 4.54455 4.55651 4.69378 4.69981 4.71075 4.88543 4.95015 4.95913 5.02557 5.08618 5.19394 5.22374 5.31483 5.57388 5.59185 5.66405 5.69293 5.90185 5.99209 6.18441 6.65138 6.91988 6.94334 7.76003 8.74325 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.002514 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.089643 B =11134.029902 C =12809.756051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 1.023 2.977 4 H -0.252 1.252 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.103 0.897 9 O -0.236 6.236 10 C 0.111 3.889 11 C -0.241 4.241 12 C -0.071 4.071 13 C -0.172 4.172 14 C -0.038 4.038 15 C -0.060 4.060 16 C 0.463 3.537 17 O -0.527 6.527 18 O -0.331 6.331 19 C 0.045 3.955 20 H 0.113 0.887 21 C -0.108 4.108 22 C 0.102 3.898 23 N -0.588 5.588 24 C 0.089 3.911 25 C -0.220 4.220 26 C -0.181 4.181 27 C 0.483 3.517 28 O -0.561 6.561 29 C -0.194 4.194 30 H 0.273 0.727 31 H 0.122 0.878 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.166 0.834 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.104 0.896 39 H 0.122 0.878 40 H 0.177 0.823 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.133 0.867 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.699 -29.903 10.441 31.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.841 3.159 4 H -0.176 1.176 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.121 0.879 9 O -0.143 6.143 10 C 0.061 3.939 11 C -0.260 4.260 12 C -0.088 4.088 13 C -0.190 4.190 14 C -0.038 4.038 15 C -0.097 4.097 16 C 0.307 3.693 17 O -0.414 6.414 18 O -0.247 6.247 19 C -0.014 4.014 20 H 0.131 0.869 21 C -0.145 4.145 22 C -0.019 4.019 23 N -0.320 5.320 24 C -0.014 4.014 25 C -0.258 4.258 26 C -0.220 4.220 27 C 0.270 3.730 28 O -0.440 6.440 29 C -0.213 4.213 30 H 0.082 0.918 31 H 0.139 0.861 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.183 0.817 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.194 0.806 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.086 0.914 44 H 0.151 0.849 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.095 -28.972 10.574 30.861 hybrid contribution -0.285 1.876 0.022 1.898 sum 0.810 -27.096 10.597 29.106 Atomic orbital electron populations 1.70210 1.08218 1.28885 1.48957 1.26703 0.96898 1.02983 0.95775 0.84606 0.77356 0.73894 0.80050 1.17606 1.19530 1.18293 1.21841 0.92601 0.81415 1.53373 0.87930 1.83949 1.36081 1.12661 1.81655 1.19853 0.91880 0.87735 0.94473 1.21354 0.92804 1.00571 1.11252 1.21193 1.00499 0.91180 0.95972 1.21032 0.92860 0.98680 1.06475 1.19119 0.94156 0.92264 0.98282 1.20406 1.05090 0.96046 0.88122 1.24186 0.73154 0.78543 0.93395 1.90723 1.48508 1.47945 1.54225 1.86600 1.72062 1.39777 1.26301 1.23677 0.95519 1.01473 0.80691 0.86929 1.22973 1.02940 0.88465 1.00162 1.22617 0.91957 0.87510 0.99783 1.47761 1.17558 1.19484 1.47243 1.21980 0.79768 1.00731 0.98917 1.23656 1.04495 0.93203 1.04413 1.23363 0.99235 1.02149 0.97204 1.21660 0.88129 0.83990 0.79175 1.90695 1.70365 1.23817 1.59144 1.20218 0.99021 0.90908 1.11171 0.91845 0.86075 0.82949 0.82483 0.81655 0.85897 0.87031 0.84413 0.87746 0.85979 0.80637 0.86415 0.89792 0.91369 0.84914 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.43 13.67 21.61 0.30 -60.13 16 2 C -0.03 -1.61 5.49 84.83 0.47 -1.15 16 3 Si 1.02 45.32 29.55 68.60 2.03 47.34 16 4 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 7 C -0.42 -25.93 9.49 67.92 0.64 -25.28 16 8 H 0.10 5.81 5.20 -2.91 -0.02 5.80 16 9 O -0.24 -15.50 9.76 -22.80 -0.22 -15.72 16 10 C 0.11 6.08 6.65 22.58 0.15 6.23 16 11 C -0.24 -11.28 9.17 22.39 0.21 -11.07 16 12 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 13 C -0.17 -5.62 9.70 22.30 0.22 -5.40 16 14 C -0.04 -1.40 4.37 -19.88 -0.09 -1.49 16 15 C -0.06 -1.60 5.94 29.10 0.17 -1.43 16 16 C 0.46 14.71 7.94 71.24 0.57 15.27 16 17 O -0.53 -21.73 15.30 21.98 0.34 -21.40 16 18 O -0.33 -8.48 9.95 -48.58 -0.48 -8.97 16 19 C 0.05 0.99 3.21 30.59 0.10 1.08 16 20 H 0.11 2.65 7.27 -2.38 -0.02 2.64 16 21 C -0.11 -0.84 6.93 31.72 0.22 -0.62 16 22 C 0.10 0.64 7.36 86.90 0.64 1.28 16 23 N -0.59 -10.58 3.27 -793.65 -2.60 -13.17 16 24 C 0.09 1.42 6.88 44.99 0.31 1.73 16 25 C -0.22 -5.12 9.77 30.60 0.30 -4.82 16 26 C -0.18 -3.32 10.34 30.60 0.32 -3.01 16 27 C 0.48 13.78 7.56 87.90 0.66 14.44 16 28 O -0.56 -22.96 14.68 0.88 0.01 -22.95 16 29 C -0.19 -9.39 9.65 22.39 0.22 -9.18 16 30 H 0.27 16.30 8.31 -92.70 -0.77 15.53 16 31 H 0.12 5.68 5.64 -2.91 -0.02 5.66 16 32 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 34 H 0.17 2.64 8.09 -2.38 -0.02 2.62 16 35 H 0.12 3.08 8.08 -2.39 -0.02 3.06 16 36 H 0.11 0.69 8.11 -2.39 -0.02 0.68 16 37 H 0.14 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.12 0.07 8.14 -2.38 -0.02 0.05 16 40 H 0.18 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.08 2.90 5.29 -2.39 -0.01 2.88 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -98.53 385.16 5.72 -92.81 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 1.02 Total: 27.92 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 5.32 Total: -25.73 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.30 Total: -73.31 kcal Atomic # 8 Polarization: -68.67 SS G_CDS: -0.36 Total: -69.03 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -98.53 5.72 -92.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771635129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.648 kcal (2) G-P(sol) polarization free energy of solvation -98.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds