Wall clock time and date at job start Wed Apr 1 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48503 * 109.47275 * 275.40803 * 3 2 1 5 5 H 1.48504 * 109.47163 * 35.40401 * 3 2 1 6 6 H 1.48500 * 109.47313 * 155.40280 * 3 2 1 7 7 C 1.37880 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99686 * 353.70139 * 7 2 1 9 9 C 1.50699 * 120.00420 * 173.69527 * 7 2 1 10 10 C 1.52997 * 112.99470 * 85.93070 * 9 7 2 11 11 O 1.45201 * 109.47534 * 46.01454 * 10 9 7 12 12 C 1.34229 * 117.00265 * 184.79058 * 11 10 9 13 13 O 1.20825 * 120.00245 * 354.54763 * 12 11 10 14 14 C 1.50701 * 119.99781 * 174.54709 * 12 11 10 15 15 N 1.46505 * 109.47013 * 185.13929 * 14 12 11 16 16 C 1.34555 * 119.77312 * 269.72737 * 15 14 12 17 17 O 1.21289 * 119.62113 * 0.83745 * 16 15 14 18 18 C 1.50515 * 120.76530 * 180.63751 * 16 15 14 19 19 C 1.52906 * 109.99945 * 325.19570 * 18 16 15 20 20 C 1.50665 * 109.52354 * 48.43217 * 19 18 16 21 21 C 1.38082 * 120.18015 * 146.07160 * 20 19 18 22 22 C 1.38281 * 120.02563 * 179.97438 * 21 20 19 23 23 C 1.38303 * 120.14770 * 359.97438 * 22 21 20 24 24 C 1.38110 * 120.09072 * 359.97438 * 23 22 21 25 25 C 1.38856 * 119.84087 * 326.05420 * 20 19 18 26 26 C 1.54028 * 113.92697 * 217.86509 * 9 7 2 27 27 O 1.44173 * 85.51972 * 91.66342 * 26 9 7 28 28 C 1.44182 * 93.34095 * 24.18976 * 27 26 9 29 29 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47755 * 286.01131 * 10 9 7 31 31 H 1.09003 * 109.47128 * 166.01319 * 10 9 7 32 32 H 1.08996 * 109.47437 * 305.14259 * 14 12 11 33 33 H 1.09002 * 109.47191 * 65.14594 * 14 12 11 34 34 H 1.08999 * 109.47495 * 204.95735 * 18 16 15 35 35 H 1.09001 * 109.15789 * 85.23810 * 18 16 15 36 36 H 1.08995 * 109.46127 * 288.41715 * 19 18 16 37 37 H 1.09001 * 109.45408 * 168.44111 * 19 18 16 38 38 H 1.08000 * 119.98893 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.92992 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.95702 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.05176 * 180.02562 * 24 23 22 42 42 H 1.09002 * 113.86297 * 205.80645 * 26 9 7 43 43 H 1.08998 * 113.86806 * 337.51251 * 26 9 7 44 44 H 1.09001 * 113.86653 * 221.66460 * 28 27 26 45 45 H 1.08996 * 113.97790 * 89.96986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3823 2.1124 -1.3939 5 1 1.5083 2.6170 0.8111 6 1 3.5991 1.4099 0.5828 7 6 2.0046 -1.1940 0.0005 8 1 1.4695 -2.1265 0.1036 9 6 3.5048 -1.1980 -0.1428 10 6 4.2331 -1.0220 1.1912 11 8 3.6367 -1.8943 2.1871 12 6 4.0974 -1.7893 3.4434 13 8 5.0358 -1.0674 3.6845 14 6 3.4442 -2.5719 4.5534 15 7 4.0443 -2.1947 5.8355 16 6 5.1125 -2.8699 6.2976 17 8 5.5790 -3.7763 5.6404 18 6 5.7379 -2.5106 7.6187 19 6 5.6557 -1.0003 7.8427 20 6 4.2529 -0.5258 7.5652 21 6 3.7158 0.5168 8.2941 22 6 2.4282 0.9501 8.0364 23 6 1.6752 0.3417 7.0486 24 6 2.2073 -0.7008 6.3156 25 6 3.4994 -1.1393 6.5732 26 6 4.0474 -2.3573 -0.9996 27 8 3.9364 -1.4410 -2.1071 28 6 4.0251 -0.2763 -1.2619 29 1 -0.4851 0.8400 -0.0004 30 1 4.1476 0.0142 1.5180 31 1 5.2853 -1.2782 1.0672 32 1 2.3767 -2.3524 4.5732 33 1 3.5928 -3.6381 4.3824 34 1 6.7828 -2.8208 7.6224 35 1 5.2049 -3.0248 8.4185 36 1 6.3495 -0.4952 7.1708 37 1 5.9188 -0.7716 8.8755 38 1 4.3019 0.9946 9.0652 39 1 2.0095 1.7654 8.6077 40 1 0.6700 0.6828 6.8496 41 1 1.6189 -1.1752 5.5440 42 1 5.0731 -2.6391 -0.7615 43 1 3.3729 -3.2111 -1.0643 44 1 3.3330 0.5203 -1.5346 45 1 5.0432 0.0790 -1.1028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772364517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:38 Heat of formation + Delta-G solvation = -81.159676 kcal Electronic energy + Delta-G solvation = -30943.747701 eV Core-core repulsion = 26700.567207 eV Total energy + Delta-G solvation = -4243.180495 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48119 -40.03684 -39.32779 -38.78884 -36.17403 -35.44104 -34.68629 -32.86881 -30.88739 -30.48032 -29.73734 -28.63845 -26.02488 -25.41065 -24.66777 -24.26147 -23.05562 -22.43825 -20.55858 -19.22136 -19.09306 -17.97495 -17.60510 -17.04575 -16.68707 -16.29339 -16.13469 -15.71875 -15.65851 -15.37312 -14.94068 -14.74473 -14.56031 -14.45063 -14.07333 -13.89654 -13.72839 -13.29882 -13.18558 -12.91949 -12.83685 -12.68703 -12.30129 -12.08643 -11.96964 -11.81180 -11.44580 -11.13909 -11.09304 -10.81875 -10.53334 -10.45628 -10.38601 -10.23017 -10.06721 -9.83704 -9.57447 -9.22452 -8.99490 -8.74349 -8.63831 -8.11232 -6.24956 -4.23756 1.03860 1.16033 2.17167 2.47965 2.58382 3.09526 3.16057 3.23965 3.25816 3.65310 4.11969 4.20803 4.39176 4.45255 4.53284 4.66585 4.81888 4.90324 4.92168 4.98900 5.09506 5.12657 5.14508 5.23813 5.37711 5.40187 5.43494 5.51008 5.62274 5.73909 5.81621 5.83013 5.90670 5.96623 5.98641 6.12309 6.17037 6.28593 6.33620 6.36010 6.57751 6.68091 6.88343 6.94940 7.03523 7.09131 7.50186 7.73172 8.17319 8.34361 8.79824 9.34620 10.87362 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.003699 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.362367 B = 7567.906432 C = 8843.998926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.078 3.922 3 Si 0.865 3.135 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.482 4.482 8 H 0.087 0.913 9 C -0.006 4.006 10 C 0.070 3.930 11 O -0.318 6.318 12 C 0.441 3.559 13 O -0.513 6.513 14 C 0.109 3.891 15 N -0.537 5.537 16 C 0.525 3.475 17 O -0.521 6.521 18 C -0.133 4.133 19 C -0.076 4.076 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.142 4.142 23 C -0.086 4.086 24 C -0.151 4.151 25 C 0.167 3.833 26 C 0.040 3.960 27 O -0.369 6.369 28 C 0.024 3.976 29 H 0.267 0.733 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.817 -0.467 19.113 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.184 1.184 7 C -0.519 4.519 8 H 0.105 0.895 9 C -0.007 4.007 10 C -0.004 4.004 11 O -0.232 6.232 12 C 0.282 3.718 13 O -0.403 6.403 14 C -0.014 4.014 15 N -0.260 5.260 16 C 0.315 3.685 17 O -0.395 6.395 18 C -0.172 4.172 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.161 4.161 23 C -0.105 4.105 24 C -0.172 4.172 25 C 0.073 3.927 26 C -0.037 4.037 27 O -0.288 6.288 28 C -0.053 4.053 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.148 0.852 33 H 0.151 0.849 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.151 0.849 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.203 -0.763 18.440 19.812 hybrid contribution 0.445 1.297 0.002 1.371 sum 7.649 0.534 18.442 19.972 Atomic orbital electron populations 1.69853 1.06010 1.27101 1.49300 1.24922 0.94722 0.98563 0.94293 0.87323 0.80735 0.84503 0.77992 1.20127 1.21628 1.18376 1.20295 0.86077 0.95305 1.50224 0.89470 1.21673 0.98647 0.92363 0.88002 1.23849 0.95077 0.92982 0.88500 1.86583 1.61117 1.58923 1.16609 1.23830 0.82161 0.80829 0.84962 1.90616 1.27310 1.38264 1.84088 1.21098 0.99236 1.01631 0.79471 1.45090 1.30560 1.31709 1.18685 1.20782 0.78460 0.81113 0.88152 1.90748 1.60018 1.30016 1.58765 1.21677 1.03312 0.97784 0.94444 1.20420 0.93718 0.93869 1.03330 1.19484 0.96002 0.98240 0.98537 1.20806 0.95438 0.95373 0.98875 1.21107 0.94762 1.01020 0.99182 1.21026 1.00098 0.94702 0.94664 1.20981 0.93609 0.99981 1.02605 1.17644 0.92744 0.89291 0.93057 1.24031 0.98498 0.95219 0.85954 1.89572 1.94346 1.16798 1.28057 1.24247 0.98785 0.91338 0.90943 0.92321 0.91385 0.93246 0.85197 0.84871 0.87246 0.87876 0.89689 0.89129 0.85444 0.85731 0.85213 0.84881 0.92292 0.89311 0.89854 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.96 55.43 0.77 -24.97 16 2 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 3 Si 0.86 20.62 23.79 -169.99 -4.04 16.57 16 4 H -0.27 -6.41 6.78 56.52 0.38 -6.02 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.79 4.72 56.52 0.27 -5.53 16 7 C -0.48 -12.87 8.43 -34.44 -0.29 -13.16 16 8 H 0.09 2.53 8.06 -52.48 -0.42 2.10 16 9 C -0.01 -0.13 0.57 -154.59 -0.09 -0.22 16 10 C 0.07 1.51 4.75 37.16 0.18 1.68 16 11 O -0.32 -6.68 9.63 -39.25 -0.38 -7.06 16 12 C 0.44 8.41 8.01 36.01 0.29 8.70 16 13 O -0.51 -10.93 16.16 -18.75 -0.30 -11.23 16 14 C 0.11 1.61 5.73 -5.19 -0.03 1.58 16 15 N -0.54 -7.56 2.19 -114.91 -0.25 -7.82 16 16 C 0.52 7.36 7.43 -11.17 -0.08 7.28 16 17 O -0.52 -8.97 16.60 5.55 0.09 -8.87 16 18 C -0.13 -1.24 6.07 -28.02 -0.17 -1.41 16 19 C -0.08 -0.67 6.00 -27.95 -0.17 -0.84 16 20 C -0.12 -1.31 5.66 -104.47 -0.59 -1.90 16 21 C -0.09 -0.79 9.69 -39.62 -0.38 -1.18 16 22 C -0.14 -1.32 10.04 -39.54 -0.40 -1.72 16 23 C -0.09 -0.91 10.04 -39.60 -0.40 -1.31 16 24 C -0.15 -1.86 9.33 -39.40 -0.37 -2.22 16 25 C 0.17 2.15 6.32 -83.76 -0.53 1.62 16 26 C 0.04 0.82 8.34 37.60 0.31 1.14 16 27 O -0.37 -8.46 12.40 -35.23 -0.44 -8.90 16 28 C 0.02 0.52 6.53 37.61 0.25 0.77 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 30 H 0.07 1.54 5.62 -51.93 -0.29 1.25 16 31 H 0.05 0.98 7.89 -51.93 -0.41 0.57 16 32 H 0.13 1.62 5.81 -51.93 -0.30 1.32 16 33 H 0.13 1.82 7.39 -51.93 -0.38 1.43 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.52 8.06 -51.93 -0.42 0.10 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.56 6.02 -52.48 -0.32 1.24 16 42 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 43 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 44 H 0.08 1.94 3.82 -51.93 -0.20 1.74 16 45 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -34.30 365.41 -7.43 -41.73 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.82 Total: 4.19 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.57 Total: 0.86 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.52 Total: -32.79 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.03 Total: -36.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.04 Total: 16.57 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.30 -7.43 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772364517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.430 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds