Wall clock time and date at job start Wed Apr 1 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00001 * 2 1 4 4 H 1.48503 * 109.47275 * 275.40803 * 3 2 1 5 5 H 1.48504 * 109.47163 * 35.40401 * 3 2 1 6 6 H 1.48500 * 109.47313 * 155.40280 * 3 2 1 7 7 C 1.37880 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99686 * 353.70139 * 7 2 1 9 9 C 1.50699 * 120.00420 * 173.69527 * 7 2 1 10 10 C 1.52997 * 112.99470 * 85.93070 * 9 7 2 11 11 O 1.45201 * 109.47534 * 46.01454 * 10 9 7 12 12 C 1.34229 * 117.00265 * 184.79058 * 11 10 9 13 13 O 1.20825 * 120.00245 * 354.54763 * 12 11 10 14 14 C 1.50701 * 119.99781 * 174.54709 * 12 11 10 15 15 N 1.46505 * 109.47013 * 185.13929 * 14 12 11 16 16 C 1.34555 * 119.77312 * 269.72737 * 15 14 12 17 17 O 1.21289 * 119.62113 * 0.83745 * 16 15 14 18 18 C 1.50515 * 120.76530 * 180.63751 * 16 15 14 19 19 C 1.52906 * 109.99945 * 325.19570 * 18 16 15 20 20 C 1.50665 * 109.52354 * 48.43217 * 19 18 16 21 21 C 1.38082 * 120.18015 * 146.07160 * 20 19 18 22 22 C 1.38281 * 120.02563 * 179.97438 * 21 20 19 23 23 C 1.38303 * 120.14770 * 359.97438 * 22 21 20 24 24 C 1.38110 * 120.09072 * 359.97438 * 23 22 21 25 25 C 1.38856 * 119.84087 * 326.05420 * 20 19 18 26 26 C 1.54028 * 113.92697 * 217.86509 * 9 7 2 27 27 O 1.44173 * 85.51972 * 91.66342 * 26 9 7 28 28 C 1.44182 * 93.34095 * 24.18976 * 27 26 9 29 29 H 0.96998 * 120.00447 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47755 * 286.01131 * 10 9 7 31 31 H 1.09003 * 109.47128 * 166.01319 * 10 9 7 32 32 H 1.08996 * 109.47437 * 305.14259 * 14 12 11 33 33 H 1.09002 * 109.47191 * 65.14594 * 14 12 11 34 34 H 1.08999 * 109.47495 * 204.95735 * 18 16 15 35 35 H 1.09001 * 109.15789 * 85.23810 * 18 16 15 36 36 H 1.08995 * 109.46127 * 288.41715 * 19 18 16 37 37 H 1.09001 * 109.45408 * 168.44111 * 19 18 16 38 38 H 1.08000 * 119.98893 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.92992 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.95702 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.05176 * 180.02562 * 24 23 22 42 42 H 1.09002 * 113.86297 * 205.80645 * 26 9 7 43 43 H 1.08998 * 113.86806 * 337.51251 * 26 9 7 44 44 H 1.09001 * 113.86653 * 221.66460 * 28 27 26 45 45 H 1.08996 * 113.97790 * 89.96986 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3823 2.1124 -1.3939 5 1 1.5083 2.6170 0.8111 6 1 3.5991 1.4099 0.5828 7 6 2.0046 -1.1940 0.0005 8 1 1.4695 -2.1265 0.1036 9 6 3.5048 -1.1980 -0.1428 10 6 4.2331 -1.0220 1.1912 11 8 3.6367 -1.8943 2.1871 12 6 4.0974 -1.7893 3.4434 13 8 5.0358 -1.0674 3.6845 14 6 3.4442 -2.5719 4.5534 15 7 4.0443 -2.1947 5.8355 16 6 5.1125 -2.8699 6.2976 17 8 5.5790 -3.7763 5.6404 18 6 5.7379 -2.5106 7.6187 19 6 5.6557 -1.0003 7.8427 20 6 4.2529 -0.5258 7.5652 21 6 3.7158 0.5168 8.2941 22 6 2.4282 0.9501 8.0364 23 6 1.6752 0.3417 7.0486 24 6 2.2073 -0.7008 6.3156 25 6 3.4994 -1.1393 6.5732 26 6 4.0474 -2.3573 -0.9996 27 8 3.9364 -1.4410 -2.1071 28 6 4.0251 -0.2763 -1.2619 29 1 -0.4851 0.8400 -0.0004 30 1 4.1476 0.0142 1.5180 31 1 5.2853 -1.2782 1.0672 32 1 2.3767 -2.3524 4.5732 33 1 3.5928 -3.6381 4.3824 34 1 6.7828 -2.8208 7.6224 35 1 5.2049 -3.0248 8.4185 36 1 6.3495 -0.4952 7.1708 37 1 5.9188 -0.7716 8.8755 38 1 4.3019 0.9946 9.0652 39 1 2.0095 1.7654 8.6077 40 1 0.6700 0.6828 6.8496 41 1 1.6189 -1.1752 5.5440 42 1 5.0731 -2.6391 -0.7615 43 1 3.3729 -3.2111 -1.0643 44 1 3.3330 0.5203 -1.5346 45 1 5.0432 0.0790 -1.1028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772364517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:37 Heat of formation + Delta-G solvation = -103.269909 kcal Electronic energy + Delta-G solvation = -30944.706473 eV Core-core repulsion = 26700.567207 eV Total energy + Delta-G solvation = -4244.139266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.52407 -41.66231 -40.89829 -39.74735 -37.66104 -36.58663 -35.50685 -34.90015 -32.65817 -31.40486 -30.58633 -29.79051 -27.73841 -27.23969 -26.16011 -25.36018 -23.95514 -23.46759 -21.87088 -21.02369 -20.01506 -19.12459 -18.89050 -18.50907 -18.12533 -18.01244 -17.58660 -17.26946 -16.92776 -16.47195 -16.24056 -16.09594 -15.80885 -15.61455 -15.39194 -15.07097 -14.93196 -14.75065 -14.57938 -14.24927 -13.91982 -13.77185 -13.61938 -13.42665 -13.19740 -12.91312 -12.56598 -12.40080 -12.31212 -12.22941 -12.20522 -12.05769 -11.89201 -11.78832 -11.47609 -11.31960 -11.07134 -11.05283 -10.70221 -10.46533 -9.77506 -9.02918 -8.36518 -6.39228 0.19423 0.37311 0.97075 1.10559 1.19821 1.25285 1.32432 1.53694 1.93518 2.21078 2.73574 2.81365 3.09971 3.26845 3.38156 3.59343 3.69770 3.74108 3.85696 3.99581 4.02760 4.04324 4.12776 4.20269 4.23391 4.29477 4.33789 4.36102 4.42429 4.47276 4.51137 4.58398 4.72447 4.84543 4.87344 4.91294 5.06797 5.12391 5.16722 5.26174 5.36695 5.42617 5.53391 5.54588 5.58868 5.89240 6.16114 6.20326 6.58387 6.64744 6.74378 7.22284 8.79458 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.003699 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.362367 B = 7567.906432 C = 8843.998926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.026 3.974 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.235 1.235 7 C -0.481 4.481 8 H 0.047 0.953 9 C -0.019 4.019 10 C 0.074 3.926 11 O -0.334 6.334 12 C 0.440 3.560 13 O -0.536 6.536 14 C 0.111 3.889 15 N -0.539 5.539 16 C 0.513 3.487 17 O -0.565 6.565 18 C -0.126 4.126 19 C -0.072 4.072 20 C -0.127 4.127 21 C -0.082 4.082 22 C -0.138 4.138 23 C -0.099 4.099 24 C -0.173 4.173 25 C 0.136 3.864 26 C 0.047 3.953 27 O -0.389 6.389 28 C 0.026 3.974 29 H 0.268 0.732 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.072 0.928 37 H 0.131 0.869 38 H 0.163 0.837 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 1.027 21.468 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.172 4.172 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.159 1.159 7 C -0.519 4.519 8 H 0.065 0.935 9 C -0.021 4.021 10 C 0.000 4.000 11 O -0.248 6.248 12 C 0.282 3.718 13 O -0.427 6.427 14 C -0.013 4.013 15 N -0.262 5.262 16 C 0.305 3.695 17 O -0.443 6.443 18 C -0.165 4.165 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.100 4.100 22 C -0.156 4.156 23 C -0.118 4.118 24 C -0.193 4.193 25 C 0.043 3.957 26 C -0.029 4.029 27 O -0.308 6.308 28 C -0.051 4.051 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.088 0.912 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 9.448 0.738 20.815 22.871 hybrid contribution -0.324 0.780 -0.678 1.083 sum 9.124 1.518 20.137 22.159 Atomic orbital electron populations 1.69989 1.07784 1.28017 1.51467 1.25652 0.95357 1.02063 0.94149 0.86461 0.80580 0.80134 0.78543 1.19033 1.22023 1.15859 1.20389 0.88457 0.93734 1.49290 0.93481 1.21649 0.96298 0.94620 0.89488 1.23673 0.95935 0.92590 0.87787 1.86596 1.61615 1.59007 1.17599 1.24618 0.81755 0.80575 0.84815 1.90583 1.28407 1.39476 1.84228 1.21176 0.99849 1.01289 0.78969 1.45196 1.30733 1.32218 1.18071 1.21774 0.77951 0.80280 0.89457 1.90716 1.61264 1.31925 1.60386 1.21785 1.03868 0.98697 0.92186 1.20503 0.92094 0.92890 1.05402 1.19863 0.96843 0.98374 0.97839 1.21239 0.95530 0.94394 0.98884 1.21508 0.94781 1.01018 0.98330 1.21283 1.00977 0.94472 0.95063 1.21100 0.93915 1.01044 1.03243 1.17949 0.93455 0.89961 0.94349 1.24149 1.00349 0.94199 0.84199 1.89550 1.94700 1.17545 1.28960 1.24362 1.00519 0.90653 0.89549 0.92299 0.92492 0.91057 0.83583 0.84153 0.85952 0.85346 0.90951 0.85048 0.81930 0.82952 0.84142 0.85780 0.88573 0.89819 0.91241 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.96 21.45 0.30 -55.96 16 2 C 0.03 1.48 5.43 84.66 0.46 1.94 16 3 Si 0.92 42.39 23.79 68.60 1.63 44.02 16 4 H -0.26 -11.73 6.78 99.48 0.67 -11.05 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.23 -9.86 4.72 99.48 0.47 -9.39 16 7 C -0.48 -26.40 8.43 25.60 0.22 -26.18 16 8 H 0.05 2.88 8.06 -2.91 -0.02 2.86 16 9 C -0.02 -0.88 0.57 -52.23 -0.03 -0.90 16 10 C 0.07 3.12 4.75 71.98 0.34 3.46 16 11 O -0.33 -14.14 9.63 -51.40 -0.49 -14.63 16 12 C 0.44 16.96 8.01 71.24 0.57 17.53 16 13 O -0.54 -22.81 16.16 21.97 0.35 -22.46 16 14 C 0.11 3.37 5.73 85.63 0.49 3.86 16 15 N -0.54 -15.20 2.19 -635.97 -1.39 -16.59 16 16 C 0.51 14.20 7.43 87.63 0.65 14.85 16 17 O -0.56 -19.70 16.60 -3.06 -0.05 -19.75 16 18 C -0.13 -2.08 6.07 29.76 0.18 -1.90 16 19 C -0.07 -1.04 6.00 29.81 0.18 -0.86 16 20 C -0.13 -2.45 5.66 -19.76 -0.11 -2.56 16 21 C -0.08 -1.21 9.69 22.24 0.22 -1.00 16 22 C -0.14 -2.16 10.04 22.30 0.22 -1.94 16 23 C -0.10 -2.00 10.04 22.25 0.22 -1.77 16 24 C -0.17 -4.25 9.33 22.39 0.21 -4.04 16 25 C 0.14 3.41 6.32 38.16 0.24 3.66 16 26 C 0.05 1.90 8.34 72.27 0.60 2.50 16 27 O -0.39 -17.22 12.40 -148.98 -1.85 -19.07 16 28 C 0.03 1.07 6.53 72.27 0.47 1.54 16 29 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.06 2.49 5.62 -2.39 -0.01 2.48 16 31 H 0.07 2.67 7.89 -2.39 -0.02 2.65 16 32 H 0.15 3.85 5.81 -2.39 -0.01 3.83 16 33 H 0.14 4.00 7.39 -2.39 -0.02 3.98 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.13 0.83 8.06 -2.39 -0.02 0.81 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 41 H 0.12 3.09 6.02 -2.91 -0.02 3.07 16 42 H 0.10 3.16 7.93 -2.39 -0.02 3.14 16 43 H 0.08 3.39 8.09 -2.39 -0.02 3.37 16 44 H 0.07 3.11 3.82 -2.39 -0.01 3.10 16 45 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 Total: -1.00 -77.49 365.41 4.40 -73.09 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.76 Total: 23.17 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.14 Total: 8.18 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -1.09 Total: -72.55 kcal Atomic # 8 Polarization: -73.87 SS G_CDS: -2.04 Total: -75.91 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.63 Total: 44.02 kcal Total: -77.49 4.40 -73.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772364517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.180 kcal (2) G-P(sol) polarization free energy of solvation -77.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds