Wall clock time and date at job start Wed Apr 1 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47346 * 2 1 4 4 C 1.38127 * 125.86814 * 94.65620 * 3 2 1 5 5 C 1.47968 * 125.73395 * 0.05271 * 4 3 2 6 6 C 1.39935 * 120.92139 * 340.66093 * 5 4 3 7 7 C 1.37949 * 119.00001 * 179.72956 * 6 5 4 8 8 N 1.31936 * 120.89369 * 0.55950 * 7 6 5 9 9 C 1.31942 * 122.05221 * 359.71369 * 8 7 6 10 10 C 1.37945 * 120.89584 * 0.02562 * 9 8 7 11 11 N 1.30352 * 108.53409 * 180.02562 * 4 3 2 12 12 N 1.40160 * 108.04013 * 0.02562 * 11 4 3 13 13 C 1.46492 * 126.23725 * 179.97438 * 12 11 4 14 14 N 1.46494 * 109.47571 * 90.02456 * 13 12 11 15 15 C 1.36943 * 120.00223 * 89.99453 * 14 13 12 16 16 H 1.08004 * 120.00055 * 220.94656 * 15 14 13 17 17 C 1.38812 * 119.99598 * 41.21521 * 15 14 13 18 18 N 1.31625 * 120.00076 * 9.76517 * 17 15 14 19 19 Si 1.86804 * 119.99663 * 189.76169 * 17 15 14 20 20 H 1.48493 * 109.46961 * 60.00531 * 19 17 15 21 21 H 1.48508 * 109.46669 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47176 * 300.00135 * 19 17 15 23 23 C 1.46500 * 120.00266 * 270.00181 * 14 13 12 24 24 C 1.52999 * 117.50056 * 193.69392 * 23 14 13 25 25 C 1.52997 * 117.50419 * 125.03121 * 23 14 13 26 26 C 1.34791 * 125.86801 * 275.00208 * 3 2 1 27 27 S 1.71207 * 126.17865 * 359.97355 * 26 3 2 28 28 H 1.08996 * 109.46792 * 60.00601 * 1 2 3 29 29 H 1.08998 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47136 * 300.00202 * 1 2 3 31 31 H 1.08995 * 109.47136 * 239.99797 * 2 1 3 32 32 H 1.09005 * 109.46670 * 119.99612 * 2 1 3 33 33 H 1.08000 * 120.49752 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.55120 * 180.29854 * 7 6 5 35 35 H 1.07996 * 119.55296 * 180.02562 * 9 8 7 36 36 H 1.07997 * 120.50382 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47297 * 330.02008 * 13 12 11 38 38 H 1.09003 * 109.47306 * 210.02499 * 13 12 11 39 39 H 0.96998 * 119.99797 * 184.98936 * 18 17 15 40 40 H 1.09003 * 115.54434 * 339.36315 * 23 14 13 41 41 H 1.08999 * 117.50048 * 359.97438 * 24 23 14 42 42 H 1.09000 * 117.50043 * 145.01622 * 24 23 14 43 43 H 1.09003 * 117.50227 * 214.98481 * 25 23 14 44 44 H 1.09006 * 117.49559 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3739 2.1139 1.1156 5 6 2.3267 1.6352 2.5150 6 6 1.5450 0.5306 2.8711 7 6 1.5347 0.1147 4.1864 8 7 2.2394 0.7499 5.1032 9 6 2.9850 1.7986 4.8113 10 6 3.0576 2.2786 3.5201 11 7 2.7585 3.2977 0.7286 12 7 2.6561 3.3523 -0.6682 13 6 2.9870 4.4997 -1.5166 14 7 4.3953 4.4240 -1.9130 15 6 4.7493 3.7651 -3.0601 16 1 5.6292 3.1389 -3.0736 17 6 3.9803 3.9064 -4.2071 18 7 3.0290 4.8149 -4.2538 19 14 4.2958 2.8074 -5.6843 20 1 4.1019 1.3875 -5.2952 21 1 3.3476 3.1568 -6.7726 22 1 5.6887 3.0047 -6.1596 23 6 5.4250 5.0530 -1.0822 24 6 6.8179 5.2235 -1.6919 25 6 6.5817 4.1732 -0.6038 26 6 2.1919 2.1575 -1.0881 27 16 1.8827 1.7071 -2.7107 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.9618 0.0090 2.1267 34 1 0.9384 -0.7398 4.4702 35 1 3.5460 2.2878 5.5937 36 1 3.6696 3.1377 3.2882 37 1 2.8145 5.4227 -0.9630 38 1 2.3579 4.4870 -2.4067 39 1 2.4446 4.8658 -5.0263 40 1 5.0725 5.8323 -0.4065 41 1 6.9682 4.8673 -2.7110 42 1 7.3820 6.1148 -1.4170 43 1 6.9904 4.3738 0.3866 44 1 6.5763 3.1261 -0.9068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050898550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:51 Heat of formation + Delta-G solvation = 191.730934 kcal Electronic energy + Delta-G solvation = -28512.043762 eV Core-core repulsion = 24788.035065 eV Total energy + Delta-G solvation = -3724.008697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13632 -40.20718 -37.35666 -35.81407 -34.07124 -33.47670 -31.79394 -31.39115 -30.34212 -29.95570 -26.39593 -24.80253 -24.38666 -23.79766 -22.98354 -21.99173 -21.54135 -20.97215 -20.06422 -18.05338 -17.05229 -16.73491 -16.47479 -16.33669 -16.04970 -15.75209 -15.40320 -14.67604 -14.50474 -14.33206 -14.14713 -14.03410 -13.71644 -13.48637 -13.41683 -12.75149 -12.41846 -12.02571 -11.95264 -11.70432 -11.27657 -11.15547 -11.11197 -10.89693 -10.86940 -10.73638 -10.53813 -10.41257 -10.14221 -10.03465 -9.86714 -9.81788 -9.59138 -9.51960 -9.26995 -8.52346 -6.89353 -6.79710 -6.51124 -5.95909 -3.64142 0.42513 0.78418 1.89420 2.06636 2.27655 2.82958 3.16705 3.46940 3.51579 3.51834 3.62898 4.10784 4.17679 4.34671 4.45236 4.53736 4.61221 4.76560 4.80419 4.90458 5.02296 5.03879 5.16174 5.20725 5.40113 5.43741 5.46241 5.49179 5.59047 5.70313 5.81307 5.88135 5.90941 5.98991 6.09573 6.21753 6.27640 6.31484 6.42606 6.67605 6.78406 7.01237 7.02732 7.35458 7.59994 7.72138 7.79685 8.30829 8.91787 9.55866 10.00911 11.07210 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.004334 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.311457 B = 6459.243064 C = 8016.701037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.104 3.896 3 N -0.497 5.497 4 C 0.263 3.737 5 C 0.034 3.966 6 C -0.170 4.170 7 C 0.105 3.895 8 N -0.480 5.480 9 C 0.105 3.895 10 C -0.130 4.130 11 N -0.262 5.262 12 N -0.347 5.347 13 C 0.340 3.660 14 N -0.506 5.506 15 C -0.287 4.287 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.879 5.879 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.112 3.888 24 C -0.182 4.182 25 C -0.219 4.219 26 C 0.465 3.535 27 S -0.581 6.581 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.069 0.931 38 H 0.170 0.830 39 H 0.266 0.734 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 -6.496 16.401 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.018 4.018 3 N -0.200 5.200 4 C -0.014 4.014 5 C 0.023 3.977 6 C -0.192 4.192 7 C -0.052 4.052 8 N -0.189 5.189 9 C -0.052 4.052 10 C -0.152 4.152 11 N -0.084 5.084 12 N -0.148 5.148 13 C 0.135 3.865 14 N -0.218 5.218 15 C -0.416 4.416 16 H 0.079 0.921 17 C -0.132 4.132 18 N -0.518 5.518 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.214 1.214 23 C 0.004 3.996 24 C -0.220 4.220 25 C -0.259 4.259 26 C 0.105 3.895 27 S -0.452 6.452 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.168 0.832 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.087 0.913 38 H 0.186 0.814 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.066 -5.807 16.200 17.480 hybrid contribution 0.214 -0.787 -0.960 1.260 sum -2.852 -6.594 15.240 16.848 Atomic orbital electron populations 1.22219 0.93807 1.03439 1.03728 1.22052 0.95961 0.78450 1.05386 1.46489 1.55036 1.14421 1.04095 1.22039 1.01128 0.89256 0.88933 1.17846 0.97100 0.95285 0.87509 1.22691 1.00182 0.97110 0.99185 1.22699 0.95858 0.98392 0.88256 1.67657 1.06204 1.07692 1.37363 1.22768 0.95193 0.92265 0.94970 1.22284 0.99077 1.00834 0.93028 1.77320 1.18640 1.15727 0.96744 1.54005 1.47100 1.13255 1.00412 1.22980 0.88931 0.81683 0.92887 1.43987 1.00703 1.55856 1.21236 1.18751 1.13046 1.23791 0.85969 0.92088 1.24985 0.96728 0.94237 0.97237 1.69464 1.19654 1.31577 1.31144 0.86239 0.76675 0.82114 0.81114 1.19134 1.21426 1.21369 1.21354 0.85010 0.96415 0.96829 1.23076 1.00350 0.99529 0.99070 1.23285 1.07841 0.97308 0.97457 1.24220 0.87288 0.84646 0.93297 1.93146 1.72354 1.82909 0.96794 0.90137 0.90163 0.92333 0.87173 0.88716 0.83215 0.82022 0.81887 0.83391 0.91338 0.81352 0.92364 0.88850 0.87864 0.90316 0.90672 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.55 37.16 0.35 -1.43 16 2 C 0.10 1.27 5.67 -4.04 -0.02 1.25 16 3 N -0.50 -8.21 2.76 -115.17 -0.32 -8.53 16 4 C 0.26 4.12 7.68 -153.93 -1.18 2.94 16 5 C 0.03 0.40 5.88 -104.64 -0.61 -0.21 16 6 C -0.17 -1.59 8.59 -39.05 -0.34 -1.92 16 7 C 0.10 0.89 11.17 -17.61 -0.20 0.69 16 8 N -0.48 -4.80 10.35 -13.35 -0.14 -4.93 16 9 C 0.10 0.96 11.17 -17.61 -0.20 0.76 16 10 C -0.13 -1.37 9.79 -39.05 -0.38 -1.76 16 11 N -0.26 -4.77 12.39 32.59 0.40 -4.37 16 12 N -0.35 -7.36 3.86 -65.20 -0.25 -7.61 16 13 C 0.34 7.80 6.41 -63.77 -0.41 7.39 16 14 N -0.51 -11.99 3.02 -169.35 -0.51 -12.50 16 15 C -0.29 -7.52 7.99 -15.06 -0.12 -7.64 16 16 H 0.06 1.68 7.32 -52.48 -0.38 1.29 16 17 C 0.07 1.94 4.58 -17.43 -0.08 1.86 16 18 N -0.88 -23.94 11.03 55.49 0.61 -23.33 16 19 Si 0.91 22.83 29.57 -169.99 -5.03 17.80 16 20 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.11 2.30 6.61 -67.93 -0.45 1.85 16 24 C -0.18 -3.47 9.83 -26.69 -0.26 -3.73 16 25 C -0.22 -4.13 10.11 -26.70 -0.27 -4.40 16 26 C 0.46 9.82 7.85 -86.81 -0.68 9.14 16 27 S -0.58 -14.15 29.05 -107.50 -3.12 -17.27 16 28 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.55 7.04 -51.93 -0.37 0.18 16 31 H 0.11 1.50 7.80 -51.93 -0.41 1.10 16 32 H 0.09 0.88 5.55 -51.93 -0.29 0.59 16 33 H 0.15 1.17 3.37 -52.49 -0.18 1.00 16 34 H 0.16 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.15 1.53 8.02 -52.49 -0.42 1.11 16 37 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 38 H 0.17 4.39 4.84 -51.93 -0.25 4.14 16 39 H 0.27 7.20 8.32 -40.82 -0.34 6.86 16 40 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 41 H 0.10 2.20 7.00 -51.93 -0.36 1.84 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.08 1.74 8.01 -51.93 -0.42 1.32 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -31.87 378.34 -13.08 -44.95 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.58 Total: 5.31 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -4.85 Total: 4.78 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.20 Total: -61.27 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Atomic # 16 Polarization: -14.15 SS G_CDS: -3.12 Total: -17.27 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.87 -13.08 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.684 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 204.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds