Wall clock time and date at job start Wed Apr 1 2020 03:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.47346 * 2 1 4 4 C 1.38127 * 125.86814 * 94.65620 * 3 2 1 5 5 C 1.47968 * 125.73395 * 0.05271 * 4 3 2 6 6 C 1.39935 * 120.92139 * 340.66093 * 5 4 3 7 7 C 1.37949 * 119.00001 * 179.72956 * 6 5 4 8 8 N 1.31936 * 120.89369 * 0.55950 * 7 6 5 9 9 C 1.31942 * 122.05221 * 359.71369 * 8 7 6 10 10 C 1.37945 * 120.89584 * 0.02562 * 9 8 7 11 11 N 1.30352 * 108.53409 * 180.02562 * 4 3 2 12 12 N 1.40160 * 108.04013 * 0.02562 * 11 4 3 13 13 C 1.46492 * 126.23725 * 179.97438 * 12 11 4 14 14 N 1.46494 * 109.47571 * 90.02456 * 13 12 11 15 15 C 1.36943 * 120.00223 * 89.99453 * 14 13 12 16 16 H 1.08004 * 120.00055 * 220.94656 * 15 14 13 17 17 C 1.38812 * 119.99598 * 41.21521 * 15 14 13 18 18 N 1.31625 * 120.00076 * 9.76517 * 17 15 14 19 19 Si 1.86804 * 119.99663 * 189.76169 * 17 15 14 20 20 H 1.48493 * 109.46961 * 60.00531 * 19 17 15 21 21 H 1.48508 * 109.46669 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47176 * 300.00135 * 19 17 15 23 23 C 1.46500 * 120.00266 * 270.00181 * 14 13 12 24 24 C 1.52999 * 117.50056 * 193.69392 * 23 14 13 25 25 C 1.52997 * 117.50419 * 125.03121 * 23 14 13 26 26 C 1.34791 * 125.86801 * 275.00208 * 3 2 1 27 27 S 1.71207 * 126.17865 * 359.97355 * 26 3 2 28 28 H 1.08996 * 109.46792 * 60.00601 * 1 2 3 29 29 H 1.08998 * 109.47020 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47136 * 300.00202 * 1 2 3 31 31 H 1.08995 * 109.47136 * 239.99797 * 2 1 3 32 32 H 1.09005 * 109.46670 * 119.99612 * 2 1 3 33 33 H 1.08000 * 120.49752 * 359.97438 * 6 5 4 34 34 H 1.07995 * 119.55120 * 180.29854 * 7 6 5 35 35 H 1.07996 * 119.55296 * 180.02562 * 9 8 7 36 36 H 1.07997 * 120.50382 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47297 * 330.02008 * 13 12 11 38 38 H 1.09003 * 109.47306 * 210.02499 * 13 12 11 39 39 H 0.96998 * 119.99797 * 184.98936 * 18 17 15 40 40 H 1.09003 * 115.54434 * 339.36315 * 23 14 13 41 41 H 1.08999 * 117.50048 * 359.97438 * 24 23 14 42 42 H 1.09000 * 117.50043 * 145.01622 * 24 23 14 43 43 H 1.09003 * 117.50227 * 214.98481 * 25 23 14 44 44 H 1.09006 * 117.49559 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3739 2.1139 1.1156 5 6 2.3267 1.6352 2.5150 6 6 1.5450 0.5306 2.8711 7 6 1.5347 0.1147 4.1864 8 7 2.2394 0.7499 5.1032 9 6 2.9850 1.7986 4.8113 10 6 3.0576 2.2786 3.5201 11 7 2.7585 3.2977 0.7286 12 7 2.6561 3.3523 -0.6682 13 6 2.9870 4.4997 -1.5166 14 7 4.3953 4.4240 -1.9130 15 6 4.7493 3.7651 -3.0601 16 1 5.6292 3.1389 -3.0736 17 6 3.9803 3.9064 -4.2071 18 7 3.0290 4.8149 -4.2538 19 14 4.2958 2.8074 -5.6843 20 1 4.1019 1.3875 -5.2952 21 1 3.3476 3.1568 -6.7726 22 1 5.6887 3.0047 -6.1596 23 6 5.4250 5.0530 -1.0822 24 6 6.8179 5.2235 -1.6919 25 6 6.5817 4.1732 -0.6038 26 6 2.1919 2.1575 -1.0881 27 16 1.8827 1.7071 -2.7107 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.9618 0.0090 2.1267 34 1 0.9384 -0.7398 4.4702 35 1 3.5460 2.2878 5.5937 36 1 3.6696 3.1377 3.2882 37 1 2.8145 5.4227 -0.9630 38 1 2.3579 4.4870 -2.4067 39 1 2.4446 4.8658 -5.0263 40 1 5.0725 5.8323 -0.4065 41 1 6.9682 4.8673 -2.7110 42 1 7.3820 6.1148 -1.4170 43 1 6.9904 4.3738 0.3866 44 1 6.5763 3.1261 -0.9068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050898550.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:51 Heat of formation + Delta-G solvation = 175.613064 kcal Electronic energy + Delta-G solvation = -28512.742685 eV Core-core repulsion = 24788.035065 eV Total energy + Delta-G solvation = -3724.707620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.60022 -41.02160 -39.02152 -37.15898 -35.54001 -34.80284 -33.25316 -32.29116 -31.59048 -31.52900 -28.09129 -26.14040 -25.76714 -24.73364 -24.20637 -23.43206 -23.07131 -22.16880 -21.78570 -19.47791 -18.48278 -17.92452 -17.74015 -17.54945 -17.46111 -17.16031 -16.69279 -16.35736 -16.09805 -15.68714 -15.26009 -15.03248 -14.91561 -14.85210 -14.28399 -14.05757 -13.81771 -13.40573 -13.12603 -13.02559 -12.91296 -12.81971 -12.68325 -12.48296 -12.31917 -12.29508 -12.19511 -12.09616 -12.04385 -11.63086 -11.43342 -11.02344 -10.62167 -10.59613 -10.49855 -10.22181 -8.76553 -8.62185 -8.38347 -7.96525 -5.66926 -0.53024 0.07866 0.23740 0.49530 1.08208 1.38903 1.41604 1.46596 1.56585 1.58040 2.47163 2.75436 2.95777 3.19011 3.21233 3.27655 3.45597 3.51248 3.60535 3.82112 3.90512 3.94176 4.01948 4.15156 4.17958 4.24508 4.33992 4.37435 4.44140 4.48419 4.63598 4.78799 4.81155 4.82433 4.89421 4.93402 5.01877 5.19229 5.22089 5.23116 5.35919 5.45737 5.57433 5.59858 5.65687 6.21570 6.40873 6.89226 6.97248 7.61403 8.06056 9.01894 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.004334 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.311457 B = 6459.243064 C = 8016.701037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.486 5.486 4 C 0.290 3.710 5 C 0.005 3.995 6 C -0.158 4.158 7 C 0.111 3.889 8 N -0.490 5.490 9 C 0.109 3.891 10 C -0.131 4.131 11 N -0.281 5.281 12 N -0.357 5.357 13 C 0.352 3.648 14 N -0.524 5.524 15 C -0.279 4.279 16 H 0.041 0.959 17 C 0.047 3.953 18 N -0.893 5.893 19 Si 0.939 3.061 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.092 3.908 24 C -0.174 4.174 25 C -0.202 4.202 26 C 0.467 3.533 27 S -0.661 6.661 28 H 0.044 0.956 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.166 0.834 34 H 0.199 0.801 35 H 0.191 0.809 36 H 0.147 0.853 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.258 0.742 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -7.572 20.780 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.027 4.027 3 N -0.187 5.187 4 C 0.013 3.987 5 C -0.006 4.006 6 C -0.180 4.180 7 C -0.045 4.045 8 N -0.200 5.200 9 C -0.047 4.047 10 C -0.153 4.153 11 N -0.103 5.103 12 N -0.154 5.154 13 C 0.146 3.854 14 N -0.237 5.237 15 C -0.408 4.408 16 H 0.059 0.941 17 C -0.155 4.155 18 N -0.534 5.534 19 Si 0.768 3.232 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.202 1.202 23 C -0.015 4.015 24 C -0.213 4.213 25 C -0.242 4.242 26 C 0.103 3.897 27 S -0.534 6.534 28 H 0.063 0.937 29 H 0.136 0.864 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.153 0.847 33 H 0.183 0.817 34 H 0.216 0.784 35 H 0.208 0.792 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.126 0.874 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.030 -6.904 20.634 21.968 hybrid contribution 0.155 -0.609 -1.921 2.021 sum -2.875 -7.513 18.713 20.368 Atomic orbital electron populations 1.22190 0.91861 1.05579 1.02673 1.22534 0.97544 0.76041 1.06534 1.46699 1.53494 1.15447 1.03020 1.22832 0.97719 0.87988 0.90179 1.17956 0.99894 0.97415 0.85339 1.22855 0.99186 0.95804 1.00131 1.23286 0.95121 0.98720 0.87359 1.67761 1.06350 1.07899 1.37978 1.23177 0.94770 0.91860 0.94866 1.22372 0.98861 1.00750 0.93358 1.77346 1.21484 1.17454 0.94029 1.53233 1.47067 1.12945 1.02190 1.22417 0.88474 0.82213 0.92300 1.43957 1.01377 1.56913 1.21484 1.18527 1.12124 1.23205 0.86936 0.94136 1.25231 0.97093 0.94980 0.98227 1.69565 1.20277 1.32645 1.30935 0.85796 0.76918 0.80215 0.80227 1.21387 1.21727 1.20237 1.21598 0.84886 0.97542 0.97428 1.23068 0.99681 1.00757 0.97762 1.23201 1.06603 0.95498 0.98862 1.23646 0.87714 0.85216 0.93140 1.93222 1.75797 1.83995 1.00368 0.93686 0.86417 0.90787 0.88806 0.84721 0.81675 0.78441 0.79170 0.83535 0.89952 0.84401 0.93199 0.86803 0.90681 0.86945 0.87354 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 9.55 71.98 0.69 -2.34 16 2 C 0.09 2.11 5.67 86.38 0.49 2.60 16 3 N -0.49 -15.66 2.76 -518.30 -1.43 -17.09 16 4 C 0.29 8.57 7.68 136.33 1.05 9.62 16 5 C 0.01 0.11 5.88 -19.87 -0.12 -0.01 16 6 C -0.16 -2.24 8.59 22.61 0.19 -2.05 16 7 C 0.11 1.32 11.17 84.61 0.95 2.26 16 8 N -0.49 -7.56 10.35 -196.16 -2.03 -9.59 16 9 C 0.11 1.56 11.17 84.61 0.95 2.50 16 10 C -0.13 -2.36 9.79 22.61 0.22 -2.14 16 11 N -0.28 -10.01 12.39 -50.82 -0.63 -10.64 16 12 N -0.36 -15.35 3.86 -360.21 -1.39 -16.74 16 13 C 0.35 16.57 6.41 170.96 1.10 17.67 16 14 N -0.52 -25.35 3.02 -689.70 -2.08 -27.43 16 15 C -0.28 -15.19 7.99 84.03 0.67 -14.51 16 16 H 0.04 2.34 7.32 -2.91 -0.02 2.32 16 17 C 0.05 2.61 4.58 84.86 0.39 3.00 16 18 N -0.89 -50.82 11.03 21.65 0.24 -50.58 16 19 Si 0.94 48.78 29.57 68.60 2.03 50.81 16 20 H -0.29 -15.81 7.11 99.48 0.71 -15.11 16 21 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 23 C 0.09 3.73 6.61 44.99 0.30 4.03 16 24 C -0.17 -6.49 9.83 30.62 0.30 -6.18 16 25 C -0.20 -7.36 10.11 30.62 0.31 -7.05 16 26 C 0.47 20.21 7.85 179.02 1.41 21.61 16 27 S -0.66 -33.92 29.05 -56.49 -1.64 -35.56 16 28 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.13 7.04 -2.39 -0.02 1.12 16 31 H 0.09 2.53 7.80 -2.39 -0.02 2.51 16 32 H 0.14 1.97 5.55 -2.38 -0.01 1.96 16 33 H 0.17 1.76 3.37 -2.91 -0.01 1.75 16 34 H 0.20 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.15 2.66 8.02 -2.91 -0.02 2.64 16 37 H 0.08 3.56 8.04 -2.38 -0.02 3.54 16 38 H 0.14 7.52 4.84 -2.39 -0.01 7.51 16 39 H 0.26 14.68 8.32 -92.71 -0.77 13.91 16 40 H 0.11 4.09 8.10 -2.39 -0.02 4.08 16 41 H 0.07 3.24 7.00 -2.39 -0.02 3.23 16 42 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.05 2.29 8.01 -2.38 -0.02 2.27 16 Total: -1.00 -74.97 378.34 2.99 -71.99 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 1.04 Total: 15.83 kcal Atomic # 6 Polarization: 20.13 SS G_CDS: 8.88 Total: 29.01 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -7.32 Total: -132.08 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Atomic # 16 Polarization: -33.92 SS G_CDS: -1.64 Total: -35.56 kcal Total: -74.97 2.99 -71.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050898550.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.600 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds