Wall clock time and date at job start Wed Apr 1 2020 03:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47358 * 2 1 4 4 C 1.46505 * 120.00067 * 270.00595 * 3 2 1 5 5 C 1.50700 * 109.46765 * 269.99273 * 4 3 2 6 6 H 1.08003 * 120.00392 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00236 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99339 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00155 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47248 * 60.00231 * 9 7 5 11 11 H 1.48505 * 109.46951 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47212 * 300.00081 * 9 7 5 13 13 C 1.34778 * 120.00127 * 89.99930 * 3 2 1 14 14 O 1.21285 * 119.99890 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99899 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47264 * 180.02562 * 15 13 3 17 17 C 1.34861 * 117.00023 * 180.02562 * 16 15 13 18 18 O 1.21573 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.46803 * 119.99560 * 180.02562 * 17 16 15 20 20 C 1.35900 * 125.13981 * 179.97438 * 19 17 16 21 21 C 1.46213 * 106.08059 * 179.97438 * 20 19 17 22 22 C 1.39712 * 134.19103 * 179.97438 * 21 20 19 23 23 C 1.36621 * 119.71252 * 180.02562 * 22 21 20 24 24 C 1.50696 * 119.77588 * 179.97438 * 23 22 21 25 25 C 1.38838 * 120.44457 * 0.02562 * 23 22 21 26 26 C 1.37796 * 120.74702 * 359.97438 * 25 23 22 27 27 C 1.39027 * 119.85493 * 359.97438 * 26 25 23 28 28 O 1.34714 * 133.22811 * 179.69060 * 27 26 25 29 29 H 1.09001 * 109.47175 * 59.99627 * 1 2 3 30 30 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47023 * 300.00046 * 1 2 3 32 32 H 1.09000 * 109.47294 * 240.00035 * 2 1 3 33 33 H 1.08997 * 109.47504 * 119.99697 * 2 1 3 34 34 H 1.08992 * 109.46967 * 29.99536 * 4 3 2 35 35 H 1.08997 * 109.47106 * 150.00161 * 4 3 2 36 36 H 0.97004 * 119.99763 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47445 * 59.99919 * 15 13 3 38 38 H 1.09006 * 109.46868 * 299.99617 * 15 13 3 39 39 H 1.08008 * 126.96023 * 0.02968 * 20 19 17 40 40 H 1.08004 * 120.14604 * 0.05768 * 22 21 20 41 41 H 1.09003 * 109.47022 * 90.00282 * 24 23 22 42 42 H 1.09008 * 109.47242 * 210.00293 * 24 23 22 43 43 H 1.09005 * 109.47487 * 330.00490 * 24 23 22 44 44 H 1.08003 * 119.62766 * 179.97438 * 25 23 22 45 45 H 1.08002 * 120.06845 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3898 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9131 2.0957 -3.4176 10 1 6.1402 0.6389 -3.5948 11 1 6.1606 2.7959 -4.7036 12 1 6.8409 2.6190 -2.3830 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.3062 2.1958 3.5759 17 6 2.1352 1.7095 4.8221 18 8 1.7343 0.5729 4.9814 19 6 2.4322 2.5531 5.9863 20 6 2.2975 2.1714 7.2836 21 6 2.7035 3.3224 8.0887 22 6 2.7900 3.5691 9.4611 23 6 3.2195 4.7879 9.9044 24 6 3.3128 5.0557 11.3844 25 6 3.5696 5.7818 9.0004 26 6 3.4914 5.5587 7.6428 27 6 3.0582 4.3260 7.1679 28 8 2.8770 3.8260 5.9302 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6750 3.5163 -4.4440 37 1 2.6228 0.4187 2.5299 38 1 0.9444 1.0115 2.5302 39 1 1.9598 1.2118 7.6465 40 1 2.5189 2.7994 10.1687 41 1 4.3045 4.7785 11.7420 42 1 3.1415 6.1155 11.5734 43 1 2.5599 4.4668 11.9084 44 1 3.9071 6.7407 9.3653 45 1 3.7662 6.3398 6.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052401546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:20 Heat of formation + Delta-G solvation = -86.038493 kcal Electronic energy + Delta-G solvation = -28801.647235 eV Core-core repulsion = 24558.255179 eV Total energy + Delta-G solvation = -4243.392056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.83326 -40.52945 -38.99304 -38.59360 -36.61103 -35.33234 -33.24105 -32.85412 -32.61083 -30.42210 -30.16937 -29.16252 -27.41196 -26.59176 -24.78162 -23.09604 -22.68022 -22.22172 -21.91544 -21.02624 -18.91412 -18.51679 -17.81021 -17.09883 -17.01387 -16.53481 -16.23481 -16.11188 -15.66374 -15.45430 -15.07794 -14.53389 -14.48434 -14.30509 -14.05157 -13.68240 -13.53174 -13.42603 -13.32632 -12.99254 -12.67798 -12.60702 -12.24403 -12.18726 -12.06715 -12.05035 -11.66651 -11.34143 -11.25238 -11.15424 -10.98154 -10.91974 -10.67123 -10.61921 -10.54664 -10.15555 -9.68796 -9.03281 -8.87234 -8.66208 -8.44826 -7.77447 -6.06186 -4.11122 0.09859 0.93040 1.36446 1.88104 2.53214 2.59247 3.21846 3.25019 3.31789 3.36216 3.40127 3.73995 4.13451 4.23491 4.38042 4.43469 4.58661 4.65244 4.79506 4.80547 4.93610 4.96825 5.07310 5.14309 5.18315 5.23639 5.28379 5.32933 5.42726 5.51295 5.56517 5.67653 5.71024 5.79739 5.90077 5.95293 6.05204 6.10914 6.17661 6.19223 6.43142 6.68054 6.97464 7.37930 7.39168 7.47796 7.89552 8.19492 8.27032 8.82651 8.97470 9.53768 11.01929 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.002115 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.689998 B =13233.630313 C =14464.006244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.591 5.591 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.516 6.516 15 C 0.048 3.952 16 O -0.313 6.313 17 C 0.548 3.452 18 O -0.484 6.484 19 C 0.000 4.000 20 C -0.101 4.101 21 C -0.145 4.145 22 C -0.059 4.059 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.079 4.079 26 C -0.105 4.105 27 C 0.073 3.927 28 O -0.165 6.165 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.264 0.736 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.175 0.825 40 H 0.132 0.868 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.138 0.862 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.124 -1.434 27.389 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.291 3.709 14 O -0.391 6.391 15 C -0.029 4.029 16 O -0.227 6.227 17 C 0.392 3.608 18 O -0.373 6.373 19 C -0.049 4.049 20 C -0.121 4.121 21 C -0.146 4.146 22 C -0.077 4.077 23 C -0.108 4.108 24 C -0.168 4.168 25 C -0.097 4.097 26 C -0.123 4.123 27 C 0.024 3.976 28 O -0.065 6.065 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.193 0.807 40 H 0.149 0.851 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.156 0.844 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.986 -0.891 26.920 27.228 hybrid contribution 0.878 -0.486 -0.504 1.123 sum -3.108 -1.377 26.416 26.634 Atomic orbital electron populations 1.22238 0.96498 1.01721 1.02452 1.21521 0.93780 0.83918 1.03085 1.48210 1.63821 1.13418 1.07049 1.19336 0.96486 0.93729 0.77479 1.21388 0.96854 1.32201 1.06376 0.92424 1.24936 0.97930 0.94859 0.96352 1.69922 1.35748 1.33242 1.14352 0.86539 0.84695 0.78251 0.77831 1.20228 1.21156 1.20147 1.19642 0.79913 0.87188 0.84205 1.90740 1.44293 1.17416 1.86634 1.23125 1.03083 0.92579 0.84082 1.86737 1.77964 1.44404 1.13612 1.19334 0.74927 0.84246 0.82337 1.90941 1.42717 1.17323 1.86357 1.20572 1.07191 0.84156 0.92963 1.22740 1.00295 0.99467 0.89607 1.19840 1.06189 0.93838 0.94703 1.20197 0.98162 0.96879 0.92493 1.19556 1.00954 0.93690 0.96570 1.20766 1.02586 1.02593 0.90806 1.20939 0.98237 0.99380 0.91143 1.20071 1.02749 0.93647 0.95824 1.19831 1.00368 0.95716 0.81675 1.84204 1.69069 1.24765 1.28488 0.91750 0.91857 0.93129 0.89343 0.91729 0.94563 0.93680 0.92609 0.88152 0.88248 0.80740 0.85052 0.91008 0.91277 0.91378 0.84378 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.15 0.38 -1.85 16 2 C 0.10 1.57 5.93 -4.05 -0.02 1.55 16 3 N -0.59 -12.38 2.46 -175.07 -0.43 -12.81 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.82 7.75 -10.99 -0.09 10.74 16 14 O -0.52 -13.55 16.08 -14.11 -0.23 -13.78 16 15 C 0.05 0.79 4.51 36.00 0.16 0.95 16 16 O -0.31 -5.54 9.77 -48.44 -0.47 -6.01 16 17 C 0.55 8.35 7.94 34.19 0.27 8.62 16 18 O -0.48 -7.38 16.62 -19.32 -0.32 -7.70 16 19 C 0.00 -0.01 7.10 -36.96 -0.26 -0.27 16 20 C -0.10 -1.12 10.81 -37.22 -0.40 -1.53 16 21 C -0.14 -1.56 6.38 -105.20 -0.67 -2.23 16 22 C -0.06 -0.48 9.68 -39.62 -0.38 -0.87 16 23 C -0.11 -0.77 5.85 -104.99 -0.61 -1.38 16 24 C -0.11 -0.48 10.00 36.00 0.36 -0.12 16 25 C -0.08 -0.58 9.66 -39.52 -0.38 -0.96 16 26 C -0.10 -1.00 10.07 -39.45 -0.40 -1.40 16 27 C 0.07 0.89 7.41 -38.34 -0.28 0.61 16 28 O -0.16 -2.45 10.60 1.96 0.02 -2.43 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.63 7.22 -51.92 -0.38 0.26 16 32 H 0.09 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.10 1.43 7.40 -51.93 -0.38 1.05 16 38 H 0.10 1.36 7.18 -51.93 -0.37 0.99 16 39 H 0.18 1.49 8.06 -52.48 -0.42 1.06 16 40 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.23 8.08 -51.92 -0.42 -0.19 16 43 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 44 H 0.14 0.63 8.06 -52.48 -0.42 0.20 16 45 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 393.74 15.07 5.93 5.93 Total: -1.00 -35.30 393.74 -8.59 -43.89 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.03 Total: -2.90 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.78 Total: 4.65 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.31 Total: -38.55 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -1.00 Total: -29.92 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.30 -8.59 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052401546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.148 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds