Wall clock time and date at job start Wed Apr 1 2020 03:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47358 * 2 1 4 4 C 1.46505 * 120.00067 * 270.00595 * 3 2 1 5 5 C 1.50700 * 109.46765 * 269.99273 * 4 3 2 6 6 H 1.08003 * 120.00392 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00236 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99339 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00155 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47248 * 60.00231 * 9 7 5 11 11 H 1.48505 * 109.46951 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47212 * 300.00081 * 9 7 5 13 13 C 1.34778 * 120.00127 * 89.99930 * 3 2 1 14 14 O 1.21285 * 119.99890 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99899 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.47264 * 180.02562 * 15 13 3 17 17 C 1.34861 * 117.00023 * 180.02562 * 16 15 13 18 18 O 1.21573 * 119.99970 * 359.97438 * 17 16 15 19 19 C 1.46803 * 119.99560 * 180.02562 * 17 16 15 20 20 C 1.35900 * 125.13981 * 179.97438 * 19 17 16 21 21 C 1.46213 * 106.08059 * 179.97438 * 20 19 17 22 22 C 1.39712 * 134.19103 * 179.97438 * 21 20 19 23 23 C 1.36621 * 119.71252 * 180.02562 * 22 21 20 24 24 C 1.50696 * 119.77588 * 179.97438 * 23 22 21 25 25 C 1.38838 * 120.44457 * 0.02562 * 23 22 21 26 26 C 1.37796 * 120.74702 * 359.97438 * 25 23 22 27 27 C 1.39027 * 119.85493 * 359.97438 * 26 25 23 28 28 O 1.34714 * 133.22811 * 179.69060 * 27 26 25 29 29 H 1.09001 * 109.47175 * 59.99627 * 1 2 3 30 30 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47023 * 300.00046 * 1 2 3 32 32 H 1.09000 * 109.47294 * 240.00035 * 2 1 3 33 33 H 1.08997 * 109.47504 * 119.99697 * 2 1 3 34 34 H 1.08992 * 109.46967 * 29.99536 * 4 3 2 35 35 H 1.08997 * 109.47106 * 150.00161 * 4 3 2 36 36 H 0.97004 * 119.99763 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47445 * 59.99919 * 15 13 3 38 38 H 1.09006 * 109.46868 * 299.99617 * 15 13 3 39 39 H 1.08008 * 126.96023 * 0.02968 * 20 19 17 40 40 H 1.08004 * 120.14604 * 0.05768 * 22 21 20 41 41 H 1.09003 * 109.47022 * 90.00282 * 24 23 22 42 42 H 1.09008 * 109.47242 * 210.00293 * 24 23 22 43 43 H 1.09005 * 109.47487 * 330.00490 * 24 23 22 44 44 H 1.08003 * 119.62766 * 179.97438 * 25 23 22 45 45 H 1.08002 * 120.06845 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1491 2.3898 -2.8780 8 7 3.3490 3.1258 -3.6181 9 14 5.9131 2.0957 -3.4176 10 1 6.1402 0.6389 -3.5948 11 1 6.1606 2.7959 -4.7036 12 1 6.8409 2.6190 -2.3830 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1602 1.1671 15 6 1.9923 1.3060 2.4723 16 8 2.3062 2.1958 3.5759 17 6 2.1352 1.7095 4.8221 18 8 1.7343 0.5729 4.9814 19 6 2.4322 2.5531 5.9863 20 6 2.2975 2.1714 7.2836 21 6 2.7035 3.3224 8.0887 22 6 2.7900 3.5691 9.4611 23 6 3.2195 4.7879 9.9044 24 6 3.3128 5.0557 11.3844 25 6 3.5696 5.7818 9.0004 26 6 3.4914 5.5587 7.6428 27 6 3.0582 4.3260 7.1679 28 8 2.8770 3.8260 5.9302 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6878 -2.0283 35 1 2.0955 3.1411 -1.1384 36 1 3.6750 3.5163 -4.4440 37 1 2.6228 0.4187 2.5299 38 1 0.9444 1.0115 2.5302 39 1 1.9598 1.2118 7.6465 40 1 2.5189 2.7994 10.1687 41 1 4.3045 4.7785 11.7420 42 1 3.1415 6.1155 11.5734 43 1 2.5599 4.4668 11.9084 44 1 3.9071 6.7407 9.3653 45 1 3.7662 6.3398 6.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052401546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:19 Heat of formation + Delta-G solvation = -106.142227 kcal Electronic energy + Delta-G solvation = -28802.518998 eV Core-core repulsion = 24558.255179 eV Total energy + Delta-G solvation = -4244.263819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.69865 -41.77673 -40.58710 -39.29207 -37.87287 -37.02942 -34.95557 -34.07210 -33.21701 -31.80344 -31.29913 -30.48091 -28.58842 -27.80890 -25.82559 -24.79025 -24.11739 -23.04801 -22.70313 -22.02421 -20.37462 -19.72680 -18.68246 -18.61014 -18.28762 -18.16822 -17.75880 -17.25872 -17.08597 -16.36539 -16.28160 -16.05993 -15.75851 -15.15080 -14.93240 -14.76434 -14.60002 -14.45193 -14.30925 -14.22686 -13.99123 -13.96096 -13.62886 -13.30047 -13.11246 -13.00462 -12.75590 -12.67606 -12.64297 -12.54007 -12.31711 -12.26251 -12.11522 -11.96792 -11.85721 -11.75991 -11.43857 -10.79172 -10.65847 -9.60954 -9.57504 -9.39080 -8.24713 -6.39208 -0.76768 0.22927 0.52848 0.82750 1.35398 1.40154 1.46527 1.52941 1.54834 1.59417 2.26904 2.40859 2.57981 3.05179 3.18977 3.36520 3.48555 3.68945 3.73761 3.87240 3.91294 3.95914 4.13875 4.18775 4.32096 4.37459 4.38395 4.58734 4.69628 4.73246 4.79924 4.92943 4.93256 4.94256 5.02129 5.03083 5.10103 5.17745 5.18268 5.26333 5.36281 5.51678 5.53205 5.54131 5.77425 5.92394 6.02294 6.26671 6.57692 6.69465 7.18027 7.34108 8.82581 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.002115 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.689998 B =13233.630313 C =14464.006244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.092 3.908 3 N -0.593 5.593 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.498 3.502 14 O -0.580 6.580 15 C 0.060 3.940 16 O -0.343 6.343 17 C 0.553 3.447 18 O -0.488 6.488 19 C -0.044 4.044 20 C -0.069 4.069 21 C -0.162 4.162 22 C -0.058 4.058 23 C -0.106 4.106 24 C -0.109 4.109 25 C -0.065 4.065 26 C -0.128 4.128 27 C 0.043 3.957 28 O -0.200 6.200 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.032 0.968 35 H -0.002 1.002 36 H 0.268 0.732 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.202 0.798 40 H 0.160 0.840 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.170 0.830 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -3.134 30.710 31.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.029 4.029 3 N -0.325 5.325 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.285 3.715 14 O -0.460 6.460 15 C -0.016 4.016 16 O -0.258 6.258 17 C 0.398 3.602 18 O -0.377 6.377 19 C -0.091 4.091 20 C -0.089 4.089 21 C -0.163 4.163 22 C -0.076 4.076 23 C -0.106 4.106 24 C -0.166 4.166 25 C -0.083 4.083 26 C -0.146 4.146 27 C -0.005 4.005 28 O -0.102 6.102 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.219 0.781 40 H 0.177 0.823 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.188 0.812 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.684 -2.658 30.263 30.602 hybrid contribution 0.756 0.133 -1.354 1.556 sum -2.928 -2.525 28.909 29.167 Atomic orbital electron populations 1.22185 0.94258 1.03880 1.01858 1.21907 0.95615 0.80787 1.04616 1.48205 1.63471 1.15342 1.05495 1.18797 0.95657 0.91620 0.79743 1.21679 0.97833 1.32327 1.06644 0.92693 1.25868 1.02458 0.94440 0.96420 1.70043 1.37797 1.33982 1.14784 0.85463 0.78891 0.79126 0.77305 1.18256 1.20268 1.20555 1.20525 0.78457 0.86643 0.85900 1.90700 1.47193 1.20339 1.87745 1.23032 1.05501 0.91866 0.81191 1.86724 1.78733 1.45540 1.14795 1.19449 0.74573 0.84472 0.81731 1.90910 1.43266 1.17295 1.86276 1.20569 1.10699 0.84536 0.93338 1.23134 0.97099 1.00178 0.88463 1.20087 1.07141 0.93308 0.95726 1.20592 0.97274 0.98091 0.91612 1.20007 0.99311 0.93023 0.98290 1.20843 1.03574 1.03771 0.88378 1.21396 0.96069 1.00737 0.90049 1.20387 1.03801 0.93203 0.97201 1.20389 1.01588 0.97217 0.81293 1.84130 1.70318 1.25518 1.30268 0.93767 0.88214 0.92366 0.89883 0.88111 0.95028 0.98406 0.92340 0.85439 0.85048 0.78094 0.82266 0.89979 0.89976 0.90238 0.81243 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.24 71.98 0.74 -3.24 16 2 C 0.09 2.76 5.93 86.38 0.51 3.28 16 3 N -0.59 -25.47 2.46 -826.17 -2.03 -27.50 16 4 C 0.26 14.33 5.16 85.63 0.44 14.77 16 5 C -0.55 -31.85 9.39 25.60 0.24 -31.61 16 6 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 7 C 0.01 0.43 5.46 84.66 0.46 0.89 16 8 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 9 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 C 0.50 22.02 7.75 87.66 0.68 22.70 16 14 O -0.58 -32.55 16.08 15.75 0.25 -32.30 16 15 C 0.06 1.94 4.51 71.23 0.32 2.26 16 16 O -0.34 -12.52 9.77 -50.57 -0.49 -13.01 16 17 C 0.55 17.06 7.94 70.06 0.56 17.61 16 18 O -0.49 -14.32 16.62 19.60 0.33 -14.00 16 19 C -0.04 -1.26 7.10 23.97 0.17 -1.09 16 20 C -0.07 -1.49 10.81 23.80 0.26 -1.23 16 21 C -0.16 -3.35 6.38 -20.24 -0.13 -3.48 16 22 C -0.06 -0.80 9.68 22.25 0.22 -0.58 16 23 C -0.11 -1.19 5.85 -20.10 -0.12 -1.31 16 24 C -0.11 -0.50 10.00 71.23 0.71 0.21 16 25 C -0.06 -0.81 9.66 22.31 0.22 -0.59 16 26 C -0.13 -2.44 10.07 22.35 0.23 -2.22 16 27 C 0.04 1.09 7.41 23.07 0.17 1.26 16 28 O -0.20 -6.38 10.60 -12.31 -0.13 -6.51 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.33 7.22 -2.38 -0.02 1.31 16 32 H 0.08 2.58 8.07 -2.39 -0.02 2.57 16 33 H 0.10 2.30 6.44 -2.39 -0.02 2.29 16 34 H 0.03 1.73 8.07 -2.39 -0.02 1.71 16 35 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.13 3.39 7.40 -2.39 -0.02 3.38 16 38 H 0.13 3.36 7.18 -2.38 -0.02 3.34 16 39 H 0.20 2.97 8.06 -2.91 -0.02 2.94 16 40 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.08 0.21 8.08 -2.38 -0.02 0.19 16 43 H 0.08 0.23 8.08 -2.38 -0.02 0.21 16 44 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 45 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -83.14 393.74 6.92 -76.22 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.01 Total: 8.24 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 5.67 Total: 17.62 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.74 Total: -83.78 kcal Atomic # 8 Polarization: -65.78 SS G_CDS: -0.05 Total: -65.82 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -83.14 6.92 -76.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052401546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.923 kcal (2) G-P(sol) polarization free energy of solvation -83.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds