Wall clock time and date at job start Wed Apr 1 2020 02:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99623 * 2 1 4 4 N 1.46503 * 109.47053 * 124.72681 * 3 2 1 5 5 C 1.37315 * 125.82608 * 265.02725 * 4 3 2 6 6 N 1.29415 * 108.83706 * 180.02562 * 5 4 3 7 7 N 1.40173 * 108.13138 * 359.97438 * 6 5 4 8 8 C 1.46502 * 126.35648 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47357 * 90.02065 * 8 7 6 10 10 C 1.46898 * 110.99740 * 66.05069 * 9 8 7 11 11 C 1.50705 * 109.47352 * 63.91014 * 10 9 8 12 12 H 1.07994 * 119.99556 * 356.93072 * 11 10 9 13 13 C 1.37871 * 120.00053 * 176.91888 * 11 10 9 14 14 N 1.31515 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99936 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46782 * 120.00579 * 15 13 11 18 18 H 1.48500 * 109.47171 * 240.00230 * 15 13 11 19 19 C 1.46899 * 111.00357 * 190.00185 * 9 8 7 20 20 C 1.50693 * 109.47441 * 164.21967 * 19 9 8 21 21 C 1.38679 * 120.41672 * 275.14690 * 20 19 9 22 22 C 1.38632 * 118.41429 * 179.78109 * 21 20 19 23 23 C 1.38225 * 119.16633 * 0.51168 * 22 21 20 24 24 N 1.31861 * 120.76048 * 359.72798 * 23 22 21 25 25 C 1.31889 * 121.72525 * 359.97438 * 24 23 22 26 26 C 1.34812 * 125.82912 * 84.71289 * 4 3 2 27 27 S 1.71198 * 126.30404 * 0.02562 * 26 4 3 28 28 H 1.08003 * 119.99566 * 180.27249 * 1 2 3 29 29 H 1.07999 * 120.00455 * 0.27303 * 1 2 3 30 30 H 1.07999 * 120.00455 * 179.72697 * 2 1 3 31 31 H 1.09003 * 109.47240 * 244.72175 * 3 2 1 32 32 H 1.08991 * 109.47443 * 4.72590 * 3 2 1 33 33 H 1.08003 * 125.58452 * 359.97131 * 5 4 3 34 34 H 1.09001 * 109.47457 * 210.02506 * 8 7 6 35 35 H 1.09008 * 109.46784 * 330.02233 * 8 7 6 36 36 H 1.09002 * 109.47183 * 183.91599 * 10 9 8 37 37 H 1.09009 * 109.47214 * 303.91543 * 10 9 8 38 38 H 0.97008 * 120.00184 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.46969 * 284.22618 * 19 9 8 40 40 H 1.09003 * 109.46760 * 44.21912 * 19 9 8 41 41 H 1.07990 * 120.79037 * 0.02562 * 21 20 19 42 42 H 1.08008 * 120.41626 * 180.21928 * 22 21 20 43 43 H 1.07995 * 119.62153 * 179.74693 * 23 22 21 44 44 H 1.08001 * 119.61172 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9890 1.3347 1.1352 5 6 2.7369 1.8946 2.3634 6 7 3.7772 1.7354 3.1167 7 7 4.7513 1.0514 2.3763 8 6 6.0844 0.6638 2.8441 9 7 6.0219 -0.6740 3.4475 10 6 5.6959 -1.6915 2.4394 11 6 6.8029 -1.7605 1.4191 12 1 7.6387 -1.0795 1.4823 13 6 6.7488 -2.6933 0.4052 14 7 5.7308 -3.5224 0.3281 15 14 8.1213 -2.7793 -0.8590 16 1 9.1427 -1.7461 -0.5519 17 1 8.7497 -4.1241 -0.8165 18 1 7.5627 -2.5366 -2.2134 19 6 7.2773 -0.9997 4.1373 20 6 7.0565 -2.1749 5.0543 21 6 6.5586 -1.9829 6.3343 22 6 6.3672 -3.0937 7.1413 23 6 6.6868 -4.3459 6.6506 24 7 7.1630 -4.4903 5.4296 25 6 7.3524 -3.4570 4.6322 26 6 4.2314 0.8116 1.1543 27 16 5.0085 -0.0019 -0.1360 28 1 -0.5399 -0.9354 0.0044 29 1 -0.5401 0.9352 -0.0045 30 1 1.8501 -0.9352 0.0045 31 1 2.6251 1.4005 -0.9293 32 1 1.3582 2.1318 0.0847 33 1 1.8209 2.3880 2.6531 34 1 6.7756 0.6504 2.0013 35 1 6.4316 1.3817 3.5873 36 1 5.5875 -2.6617 2.9242 37 1 4.7616 -1.4263 1.9443 38 1 5.6925 -4.1784 -0.3855 39 1 8.0413 -1.2513 3.4017 40 1 7.6047 -0.1396 4.7213 41 1 6.3219 -0.9920 6.6925 42 1 5.9778 -2.9818 8.1425 43 1 6.5445 -5.2159 7.2745 44 1 7.7440 -3.6147 3.6381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052569416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:06 Heat of formation + Delta-G solvation = 185.940704 kcal Electronic energy + Delta-G solvation = -28326.637660 eV Core-core repulsion = 24602.377880 eV Total energy + Delta-G solvation = -3724.259780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13329 -39.72560 -37.27485 -35.84008 -33.20301 -32.51408 -32.09471 -31.60073 -30.69764 -27.72338 -26.89848 -25.91570 -24.30595 -23.08539 -22.69872 -22.38596 -21.64382 -20.18116 -19.90961 -17.86802 -16.68965 -16.33466 -16.31683 -15.96323 -15.80399 -15.40958 -15.17179 -14.98969 -14.54284 -14.40236 -14.25134 -13.67834 -13.47490 -13.12448 -12.85614 -12.60950 -12.39422 -12.22983 -11.86417 -11.59555 -11.35601 -11.32088 -11.01522 -10.93158 -10.68535 -10.58740 -10.25730 -10.11767 -10.08443 -9.77442 -9.62952 -9.51431 -9.33993 -8.94630 -8.51029 -8.12219 -7.40104 -6.73700 -6.30654 -5.73956 -3.67420 1.51938 1.67204 1.75998 1.87707 2.07231 2.30284 3.02651 3.20835 3.48474 3.55757 3.57464 4.23953 4.45399 4.67083 4.68971 4.74335 4.88802 4.92456 5.04204 5.17598 5.23897 5.38209 5.40166 5.41712 5.53060 5.59554 5.65255 5.77075 5.81744 5.88556 5.95538 6.09079 6.27652 6.43440 6.46757 6.50449 6.57290 6.64681 6.81174 6.89229 7.15169 7.25351 7.60225 7.68655 7.86135 8.09768 8.12891 8.44852 8.47716 9.18920 9.87896 11.34752 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.004792 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.156909 B = 5841.131106 C = 7443.558759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.165 4.165 3 C 0.153 3.847 4 N -0.510 5.510 5 C 0.231 3.769 6 N -0.280 5.280 7 N -0.368 5.368 8 C 0.318 3.682 9 N -0.554 5.554 10 C 0.185 3.815 11 C -0.505 4.505 12 H 0.050 0.950 13 C 0.093 3.907 14 N -0.882 5.882 15 Si 0.873 3.127 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.287 1.287 19 C 0.105 3.895 20 C -0.108 4.108 21 C -0.063 4.063 22 C -0.187 4.187 23 C 0.085 3.915 24 N -0.489 5.489 25 C 0.127 3.873 26 C 0.436 3.564 27 S -0.480 6.480 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.227 0.773 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.030 0.970 37 H 0.036 0.964 38 H 0.254 0.746 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 11.252 7.912 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.184 4.184 3 C 0.031 3.969 4 N -0.215 5.215 5 C -0.071 4.071 6 N -0.099 5.099 7 N -0.164 5.164 8 C 0.108 3.892 9 N -0.280 5.280 10 C 0.060 3.940 11 C -0.545 4.545 12 H 0.068 0.932 13 C -0.110 4.110 14 N -0.521 5.521 15 Si 0.702 3.298 16 H -0.201 1.201 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.023 4.023 20 C -0.111 4.111 21 C -0.090 4.090 22 C -0.207 4.207 23 C -0.073 4.073 24 N -0.198 5.198 25 C -0.030 4.030 26 C 0.084 3.916 27 S -0.349 6.349 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.144 0.856 31 H 0.132 0.868 32 H 0.115 0.885 33 H 0.243 0.757 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.163 0.837 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.716 9.972 8.039 14.463 hybrid contribution -0.033 0.852 -1.045 1.349 sum -6.749 10.824 6.994 14.547 Atomic orbital electron populations 1.23848 0.95414 1.02080 1.00246 1.23290 0.96071 0.99221 0.99806 1.20861 0.90680 0.96782 0.88578 1.46403 1.13807 1.47993 1.13281 1.26217 0.99836 0.98154 0.82870 1.77003 0.97615 1.15371 1.19921 1.49176 1.13944 1.45849 1.07442 1.22010 0.76097 0.92042 0.99064 1.62516 1.31191 1.02425 1.31832 1.20043 0.97462 0.89007 0.87466 1.21091 1.05857 1.16538 1.11057 0.93169 1.24497 0.94722 0.95463 0.96350 1.69912 1.29492 1.20227 1.32464 0.86840 0.82931 0.76994 0.83043 1.20095 1.21804 1.21302 1.20738 0.92292 0.94048 0.95264 1.20743 0.99140 0.96535 0.94680 1.21396 0.95236 0.98916 0.93432 1.21994 1.03582 0.94075 1.01016 1.22646 0.95581 0.96437 0.92598 1.67744 1.12715 1.34823 1.04498 1.22996 0.93927 0.87328 0.98760 1.24449 0.84857 0.89167 0.93156 1.93892 1.67087 1.45108 1.28792 0.87879 0.88556 0.85590 0.86799 0.88501 0.75680 0.88291 0.89400 0.95207 0.94565 0.93586 0.90998 0.91769 0.85525 0.85708 0.83708 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 14.32 29.01 0.42 -1.29 16 2 C -0.16 -2.06 9.85 -36.02 -0.35 -2.41 16 3 C 0.15 1.71 6.25 -5.19 -0.03 1.68 16 4 N -0.51 -7.29 2.72 -120.52 -0.33 -7.61 16 5 C 0.23 2.74 12.65 -89.15 -1.13 1.62 16 6 N -0.28 -4.31 12.53 29.86 0.37 -3.94 16 7 N -0.37 -6.71 3.59 -64.99 -0.23 -6.95 16 8 C 0.32 5.79 5.82 -63.32 -0.37 5.42 16 9 N -0.55 -10.95 4.80 -241.42 -1.16 -12.11 16 10 C 0.18 4.52 4.38 -4.97 -0.02 4.50 16 11 C -0.51 -12.96 5.01 -34.44 -0.17 -13.13 16 12 H 0.05 1.29 5.95 -52.49 -0.31 0.97 16 13 C 0.09 2.57 4.77 -17.82 -0.09 2.49 16 14 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 15 Si 0.87 22.38 29.54 -169.99 -5.02 17.36 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 18 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 19 C 0.11 1.82 4.96 -4.98 -0.02 1.79 16 20 C -0.11 -1.90 4.92 -104.48 -0.51 -2.41 16 21 C -0.06 -0.96 9.88 -39.27 -0.39 -1.35 16 22 C -0.19 -2.61 10.11 -39.44 -0.40 -3.01 16 23 C 0.08 1.31 11.18 -17.54 -0.20 1.11 16 24 N -0.49 -9.27 10.36 -13.25 -0.14 -9.41 16 25 C 0.13 2.47 9.68 -17.55 -0.17 2.30 16 26 C 0.44 8.30 6.61 -86.73 -0.57 7.72 16 27 S -0.48 -11.25 24.93 -107.50 -2.68 -13.93 16 28 H 0.10 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.10 0.67 7.84 -52.49 -0.41 0.26 16 30 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 31 H 0.11 1.42 7.81 -51.93 -0.41 1.01 16 32 H 0.10 0.66 7.78 -51.93 -0.40 0.26 16 33 H 0.23 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.10 2.00 6.06 -51.93 -0.31 1.68 16 35 H 0.09 1.34 7.86 -51.92 -0.41 0.93 16 36 H 0.03 0.83 6.63 -51.93 -0.34 0.48 16 37 H 0.04 1.00 5.29 -51.92 -0.27 0.73 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 40 H 0.06 0.92 7.80 -51.93 -0.40 0.51 16 41 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.16 3.45 8.06 -52.49 -0.42 3.03 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -34.85 377.37 -12.47 -47.32 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.70 Total: 3.79 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -4.01 Total: 5.03 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.75 Total: -65.25 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: -11.25 SS G_CDS: -2.68 Total: -13.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.85 -12.47 -47.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052569416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.259 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds