Wall clock time and date at job start Wed Apr 1 2020 02:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99623 * 2 1 4 4 N 1.46503 * 109.47053 * 124.72681 * 3 2 1 5 5 C 1.37315 * 125.82608 * 265.02725 * 4 3 2 6 6 N 1.29415 * 108.83706 * 180.02562 * 5 4 3 7 7 N 1.40173 * 108.13138 * 359.97438 * 6 5 4 8 8 C 1.46502 * 126.35648 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47357 * 90.02065 * 8 7 6 10 10 C 1.46898 * 110.99740 * 66.05069 * 9 8 7 11 11 C 1.50705 * 109.47352 * 63.91014 * 10 9 8 12 12 H 1.07994 * 119.99556 * 356.93072 * 11 10 9 13 13 C 1.37871 * 120.00053 * 176.91888 * 11 10 9 14 14 N 1.31515 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99936 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46782 * 120.00579 * 15 13 11 18 18 H 1.48500 * 109.47171 * 240.00230 * 15 13 11 19 19 C 1.46899 * 111.00357 * 190.00185 * 9 8 7 20 20 C 1.50693 * 109.47441 * 164.21967 * 19 9 8 21 21 C 1.38679 * 120.41672 * 275.14690 * 20 19 9 22 22 C 1.38632 * 118.41429 * 179.78109 * 21 20 19 23 23 C 1.38225 * 119.16633 * 0.51168 * 22 21 20 24 24 N 1.31861 * 120.76048 * 359.72798 * 23 22 21 25 25 C 1.31889 * 121.72525 * 359.97438 * 24 23 22 26 26 C 1.34812 * 125.82912 * 84.71289 * 4 3 2 27 27 S 1.71198 * 126.30404 * 0.02562 * 26 4 3 28 28 H 1.08003 * 119.99566 * 180.27249 * 1 2 3 29 29 H 1.07999 * 120.00455 * 0.27303 * 1 2 3 30 30 H 1.07999 * 120.00455 * 179.72697 * 2 1 3 31 31 H 1.09003 * 109.47240 * 244.72175 * 3 2 1 32 32 H 1.08991 * 109.47443 * 4.72590 * 3 2 1 33 33 H 1.08003 * 125.58452 * 359.97131 * 5 4 3 34 34 H 1.09001 * 109.47457 * 210.02506 * 8 7 6 35 35 H 1.09008 * 109.46784 * 330.02233 * 8 7 6 36 36 H 1.09002 * 109.47183 * 183.91599 * 10 9 8 37 37 H 1.09009 * 109.47214 * 303.91543 * 10 9 8 38 38 H 0.97008 * 120.00184 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.46969 * 284.22618 * 19 9 8 40 40 H 1.09003 * 109.46760 * 44.21912 * 19 9 8 41 41 H 1.07990 * 120.79037 * 0.02562 * 21 20 19 42 42 H 1.08008 * 120.41626 * 180.21928 * 22 21 20 43 43 H 1.07995 * 119.62153 * 179.74693 * 23 22 21 44 44 H 1.08001 * 119.61172 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9890 1.3347 1.1352 5 6 2.7369 1.8946 2.3634 6 7 3.7772 1.7354 3.1167 7 7 4.7513 1.0514 2.3763 8 6 6.0844 0.6638 2.8441 9 7 6.0219 -0.6740 3.4475 10 6 5.6959 -1.6915 2.4394 11 6 6.8029 -1.7605 1.4191 12 1 7.6387 -1.0795 1.4823 13 6 6.7488 -2.6933 0.4052 14 7 5.7308 -3.5224 0.3281 15 14 8.1213 -2.7793 -0.8590 16 1 9.1427 -1.7461 -0.5519 17 1 8.7497 -4.1241 -0.8165 18 1 7.5627 -2.5366 -2.2134 19 6 7.2773 -0.9997 4.1373 20 6 7.0565 -2.1749 5.0543 21 6 6.5586 -1.9829 6.3343 22 6 6.3672 -3.0937 7.1413 23 6 6.6868 -4.3459 6.6506 24 7 7.1630 -4.4903 5.4296 25 6 7.3524 -3.4570 4.6322 26 6 4.2314 0.8116 1.1543 27 16 5.0085 -0.0019 -0.1360 28 1 -0.5399 -0.9354 0.0044 29 1 -0.5401 0.9352 -0.0045 30 1 1.8501 -0.9352 0.0045 31 1 2.6251 1.4005 -0.9293 32 1 1.3582 2.1318 0.0847 33 1 1.8209 2.3880 2.6531 34 1 6.7756 0.6504 2.0013 35 1 6.4316 1.3817 3.5873 36 1 5.5875 -2.6617 2.9242 37 1 4.7616 -1.4263 1.9443 38 1 5.6925 -4.1784 -0.3855 39 1 8.0413 -1.2513 3.4017 40 1 7.6047 -0.1396 4.7213 41 1 6.3219 -0.9920 6.6925 42 1 5.9778 -2.9818 8.1425 43 1 6.5445 -5.2159 7.2745 44 1 7.7440 -3.6147 3.6381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052569416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:05 Heat of formation + Delta-G solvation = 163.431586 kcal Electronic energy + Delta-G solvation = -28327.613728 eV Core-core repulsion = 24602.377880 eV Total energy + Delta-G solvation = -3725.235848 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44890 -41.03972 -38.80543 -36.97992 -34.48898 -34.38109 -33.38461 -32.92359 -32.06319 -29.38534 -28.36452 -27.10841 -26.03142 -24.44881 -24.16925 -23.65171 -22.94997 -21.63358 -21.01645 -19.25055 -18.31289 -17.78716 -17.68683 -17.38708 -17.13811 -16.75154 -16.67131 -16.32505 -16.11794 -15.71690 -15.44969 -15.26248 -14.59404 -14.45098 -14.34523 -14.06372 -13.80796 -13.36527 -13.30505 -13.06273 -12.84810 -12.77449 -12.62421 -12.55847 -12.37096 -12.29394 -11.92555 -11.89359 -11.66416 -11.48568 -11.20902 -10.61444 -10.50843 -10.31177 -10.24680 -9.82622 -9.14646 -8.45020 -8.08822 -7.89676 -5.83365 0.15728 0.34418 0.50351 0.57861 0.99171 1.22736 1.33839 1.40533 1.44082 1.60044 2.05206 2.54339 2.90690 3.28122 3.47022 3.50432 3.68650 3.79292 3.86474 3.95373 4.00566 4.08661 4.20633 4.24341 4.26890 4.28007 4.51989 4.58874 4.60915 4.71484 4.73475 5.00324 5.00563 5.01584 5.16019 5.29140 5.40631 5.51471 5.53215 5.55737 5.68843 5.82253 5.90556 5.94858 6.01906 6.31432 6.34278 6.44882 7.09233 7.17564 7.72767 9.18115 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009184 B = 0.004792 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.156909 B = 5841.131106 C = 7443.558759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.203 4.203 3 C 0.153 3.847 4 N -0.499 5.499 5 C 0.261 3.739 6 N -0.300 5.300 7 N -0.371 5.371 8 C 0.317 3.683 9 N -0.548 5.548 10 C 0.216 3.784 11 C -0.474 4.474 12 H 0.047 0.953 13 C 0.051 3.949 14 N -0.918 5.918 15 Si 0.913 3.087 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.304 1.304 19 C 0.107 3.893 20 C -0.120 4.120 21 C -0.060 4.060 22 C -0.170 4.170 23 C 0.075 3.925 24 N -0.524 5.524 25 C 0.098 3.902 26 C 0.451 3.549 27 S -0.605 6.605 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.298 0.702 34 H 0.073 0.927 35 H 0.130 0.870 36 H -0.008 1.008 37 H 0.006 0.994 38 H 0.246 0.754 39 H 0.048 0.952 40 H 0.107 0.893 41 H 0.158 0.842 42 H 0.171 0.829 43 H 0.177 0.823 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.337 14.974 11.729 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.223 4.223 3 C 0.034 3.966 4 N -0.200 5.200 5 C -0.039 4.039 6 N -0.119 5.119 7 N -0.164 5.164 8 C 0.107 3.893 9 N -0.273 5.273 10 C 0.090 3.910 11 C -0.514 4.514 12 H 0.065 0.935 13 C -0.148 4.148 14 N -0.560 5.560 15 Si 0.742 3.258 16 H -0.190 1.190 17 H -0.216 1.216 18 H -0.231 1.231 19 C -0.021 4.021 20 C -0.122 4.122 21 C -0.086 4.086 22 C -0.189 4.189 23 C -0.082 4.082 24 N -0.233 5.233 25 C -0.059 4.059 26 C 0.091 3.909 27 S -0.475 6.475 28 H 0.118 0.882 29 H 0.161 0.839 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.180 0.820 33 H 0.312 0.688 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.010 0.990 37 H 0.024 0.976 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.176 0.824 42 H 0.188 0.812 43 H 0.194 0.806 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.580 13.731 11.881 20.530 hybrid contribution 0.596 -0.136 -2.023 2.113 sum -8.983 13.595 9.859 19.045 Atomic orbital electron populations 1.24142 0.93963 1.04127 0.95015 1.22933 0.97092 0.97554 1.04719 1.21214 0.90553 0.98187 0.86672 1.46645 1.12190 1.46046 1.15165 1.27633 1.00627 0.95177 0.80414 1.77078 0.98026 1.16605 1.20155 1.49243 1.14624 1.45132 1.07374 1.22071 0.76245 0.91925 0.99079 1.62449 1.32795 1.02003 1.30061 1.19414 0.95611 0.88567 0.87436 1.21154 1.05390 1.14614 1.10235 0.93457 1.24958 0.95907 0.96008 0.97901 1.70027 1.31361 1.21517 1.33083 0.86191 0.81597 0.77111 0.80855 1.19023 1.21553 1.23136 1.20802 0.90400 0.95824 0.95047 1.20726 1.00090 0.95337 0.96086 1.21760 0.93882 1.00896 0.92089 1.22458 1.01271 0.92705 1.02507 1.23278 0.94589 0.98740 0.91561 1.67639 1.14186 1.35206 1.06273 1.22583 0.96361 0.88935 0.97991 1.23811 0.86530 0.88482 0.92106 1.94069 1.69700 1.51482 1.32258 0.88159 0.83904 0.91687 0.88883 0.82000 0.68751 0.90933 0.85241 0.98952 0.97564 0.94518 0.93371 0.87490 0.82426 0.81191 0.80578 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 14.32 67.78 0.97 -1.16 16 2 C -0.20 -4.96 9.85 25.65 0.25 -4.71 16 3 C 0.15 3.08 6.25 85.63 0.54 3.62 16 4 N -0.50 -13.16 2.72 -535.20 -1.46 -14.62 16 5 C 0.26 4.87 12.65 179.83 2.27 7.14 16 6 N -0.30 -8.09 12.53 -59.43 -0.74 -8.84 16 7 N -0.37 -13.14 3.59 -359.53 -1.29 -14.43 16 8 C 0.32 11.36 5.82 170.81 0.99 12.35 16 9 N -0.55 -21.79 4.80 -917.73 -4.40 -26.19 16 10 C 0.22 11.19 4.38 85.56 0.37 11.56 16 11 C -0.47 -26.03 5.01 25.60 0.13 -25.90 16 12 H 0.05 2.58 5.95 -2.91 -0.02 2.56 16 13 C 0.05 3.05 4.77 84.65 0.40 3.45 16 14 N -0.92 -58.53 13.29 21.45 0.28 -58.25 16 15 Si 0.91 49.11 29.54 68.60 2.03 51.13 16 16 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 17 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 18 H -0.30 -17.11 7.11 99.48 0.71 -16.40 16 19 C 0.11 3.69 4.96 85.55 0.42 4.12 16 20 C -0.12 -4.18 4.92 -19.78 -0.10 -4.28 16 21 C -0.06 -1.63 9.88 22.47 0.22 -1.41 16 22 C -0.17 -4.13 10.11 22.36 0.23 -3.91 16 23 C 0.08 2.21 11.18 84.69 0.95 3.16 16 24 N -0.52 -20.44 10.36 -195.84 -2.03 -22.47 16 25 C 0.10 4.03 9.68 84.67 0.82 4.84 16 26 C 0.45 17.37 6.61 178.99 1.18 18.55 16 27 S -0.60 -30.53 24.93 -56.49 -1.41 -31.93 16 28 H 0.10 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.14 1.00 7.84 -2.91 -0.02 0.98 16 30 H 0.06 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.09 2.32 7.81 -2.39 -0.02 2.30 16 32 H 0.16 1.16 7.78 -2.39 -0.02 1.14 16 33 H 0.30 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.07 3.02 6.06 -2.39 -0.01 3.01 16 35 H 0.13 3.56 7.86 -2.38 -0.02 3.54 16 36 H -0.01 -0.45 6.63 -2.39 -0.02 -0.47 16 37 H 0.01 0.38 5.29 -2.38 -0.01 0.36 16 38 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 39 H 0.05 1.89 6.15 -2.39 -0.01 1.87 16 40 H 0.11 2.75 7.80 -2.39 -0.02 2.74 16 41 H 0.16 3.32 8.06 -2.92 -0.02 3.30 16 42 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.18 3.87 8.06 -2.91 -0.02 3.84 16 44 H 0.13 5.95 8.06 -2.91 -0.02 5.93 16 Total: -1.00 -90.33 377.37 1.65 -88.68 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.01 Total: 9.49 kcal Atomic # 6 Polarization: 17.77 SS G_CDS: 9.66 Total: 27.43 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -9.64 Total: -144.80 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.13 kcal Atomic # 16 Polarization: -30.53 SS G_CDS: -1.41 Total: -31.93 kcal Total: -90.33 1.65 -88.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052569416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.109 kcal (2) G-P(sol) polarization free energy of solvation -90.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds